Tyler C. Shimko - Publications
Affiliations: | 2015-2020 | Genetics | Stanford University, Palo Alto, CA |
Year | Citation | Score | |||
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2020 | Shimko TC, Fordyce PM, Orenstein Y. DeCoDe: degenerate codon design for complete protein-coding DNA libraries. Bioinformatics (Oxford, England). PMID 32176271 DOI: 10.1093/Bioinformatics/Btaa162 | 0.632 | |||
2019 | Shimko TC, Fordyce PM. Deep Learning Models Explore the Structural Effects of Transcription Factor-DNA Complexes on Binding Specificity Biophysical Journal. 116: 503a. DOI: 10.1016/J.Bpj.2018.11.2714 | 0.68 | |||
2018 | Aditham AK, Shimko TC, Fordyce PM. BET-seq: Binding energy topographies revealed by microfluidics and high-throughput sequencing. Methods in Cell Biology. 148: 229-250. PMID 30473071 DOI: 10.1016/Bs.Mcb.2018.09.011 | 0.698 | |||
2018 | Greenside P, Shimko T, Fordyce P, Kundaje A. Discovering epistatic feature interactions from neural network models of regulatory DNA sequences. Bioinformatics (Oxford, England). 34: i629-i637. PMID 30423062 DOI: 10.1093/Bioinformatics/Bty575 | 0.693 | |||
2018 | Brower K, Puccinelli R, Markin CJ, Shimko TC, Longwell SA, Cruz B, Gomez-Sjoberg R, Fordyce PM. An Open-Source, Programmable Pneumatic Setup for Operation and Automated Control of Single- and Multi-Layer Microfluidic Devices. Hardwarex. 3: 117-134. PMID 30221210 DOI: 10.1016/J.Ohx.2017.10.001 | 0.604 | |||
2018 | Le DD, Shimko TC, Aditham AK, Keys AM, Longwell SA, Orenstein Y, Fordyce PM. Comprehensive, high-resolution binding energy landscapes reveal context dependencies of transcription factor binding. Proceedings of the National Academy of Sciences of the United States of America. PMID 29588420 DOI: 10.1073/Pnas.1715888115 | 0.55 | |||
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