| Year |
Citation |
Score |
| 2021 |
Jones W, Gong B, Novoradovskaya N, Li D, Kusko R, Richmond TA, Johann DJ, Bisgin H, Sahraeian SME, Bushel PR, Pirooznia M, Wilkins K, Chierici M, Bao W, Basehore LS, et al. A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency. Genome Biology. 22: 111. PMID 33863366 DOI: 10.1186/s13059-021-02316-z |
0.383 |
|
| 2021 |
Gong B, Li D, Kusko R, Novoradovskaya N, Zhang Y, Wang S, Pabón-Peña C, Zhang Z, Lai K, Cai W, LoCoco JS, Lader E, Richmond TA, Mittal VK, Liu LC, et al. Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions. Genome Biology. 22: 109. PMID 33863344 DOI: 10.1186/s13059-021-02315-0 |
0.322 |
|
| 2021 |
Rodney AR, Buckley RM, Fulton RS, Fronick C, Richmond T, Helps CR, Pantke P, Trent DJ, Vernau KM, Munday JS, Lewin AC, Middleton R, Lyons LA, Warren WC. A domestic cat whole exome sequencing resource for trait discovery. Scientific Reports. 11: 7159. PMID 33785770 DOI: 10.1038/s41598-021-86200-7 |
0.509 |
|
| 2019 |
Gardiner LJ, Brabbs T, Akhunov A, Jordan K, Budak H, Richmond T, Singh S, Catchpole L, Akhunov E, Hall A. Integrating genomic resources to present full gene and putative promoter capture probe sets for bread wheat. Gigascience. PMID 30715311 DOI: 10.1093/Gigascience/Giz018 |
0.551 |
|
| 2019 |
Hoff SNK, Baalsrud HT, Tooming-Klunderud A, Skage M, Richmond T, Obernosterer G, Shirzadi R, Tørresen OK, Jakobsen KS, Jentoft S. Long-read sequence capture of the haemoglobin gene clusters across codfish species. Molecular Ecology Resources. 19: 245-259. PMID 30329222 DOI: 10.1111/1755-0998.12955 |
0.49 |
|
| 2018 |
Wendt J, Rosenbaum H, Richmond TA, Jeddeloh JA, Burgess DL. Targeted Bisulfite Sequencing Using the SeqCap Epi Enrichment System. Methods in Molecular Biology (Clifton, N.J.). 1708: 383-405. PMID 29224155 DOI: 10.1007/978-1-4939-7481-8_20 |
0.46 |
|
| 2015 |
Zastrow-Hayes GM, Lin H, Sigmund AL, Hoffman JL, Alarcon CM, Hayes KR, Richmond TA, Jeddeloh JA, May GD, Beatty MK. Southern-by-Sequencing: A Robust Screening Approach for Molecular Characterization of Genetically Modified Crops. The Plant Genome. 8: eplantgenome2014.08.. PMID 33228291 DOI: 10.3835/plantgenome2014.08.0037 |
0.454 |
|
| 2015 |
Allum F, Shao X, Guénard F, Simon MM, Busche S, Caron M, Lambourne J, Lessard J, Tandre K, Hedman ÅK, Kwan T, Ge B, Rönnblom L, McCarthy MI, ... ... Richmond T, et al. Erratum: Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants. Nature Communications. 6: 8016. PMID 26219997 DOI: 10.1038/ncomms9016 |
0.33 |
|
| 2015 |
Allum F, Shao X, Guénard F, Simon MM, Busche S, Caron M, Lambourne J, Lessard J, Tandre K, Hedman ÅK, Kwan T, Ge B, Rönnblom L, McCarthy MI, ... ... Richmond T, et al. Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants. Nature Communications. 6: 7211. PMID 26021296 DOI: 10.1038/Ncomms8211 |
0.425 |
|
| 2015 |
Li Q, Suzuki M, Wendt J, Patterson N, Eichten SR, Hermanson PJ, Green D, Jeddeloh J, Richmond T, Rosenbaum H, Burgess D, Springer NM, Greally JM. Post-conversion targeted capture of modified cytosines in mammalian and plant genomes. Nucleic Acids Research. 43: e81. PMID 25813045 DOI: 10.1093/Nar/Gkv244 |
0.447 |
|
| 2014 |
Li Q, Eichten SR, Hermanson PJ, Zaunbrecher VM, Song J, Wendt J, Rosenbaum H, Madzima TF, Sloan AE, Huang J, Burgess DL, Richmond TA, McGinnis KM, Meeley RB, Danilevskaya ON, et al. Genetic perturbation of the maize methylome. The Plant Cell. 26: 4602-16. PMID 25527708 DOI: 10.1105/Tpc.114.133140 |
0.348 |
|
| 2014 |
Evans J, Kim J, Childs KL, Vaillancourt B, Crisovan E, Nandety A, Gerhardt DJ, Richmond TA, Jeddeloh JA, Kaeppler SM, Casler MD, Buell CR. Nucleotide polymorphism and copy number variant detection using exome capture and next-generation sequencing in the polyploid grass Panicum virgatum. The Plant Journal : For Cell and Molecular Biology. 79: 993-1008. PMID 24947485 DOI: 10.1111/Tpj.12601 |
0.371 |
|
| 2013 |
Cao H, Wu J, Wang Y, Jiang H, Zhang T, Liu X, Xu Y, Liang D, Gao P, Sun Y, Gifford B, D'Ascenzo M, Liu X, Tellier LC, Yang F, ... ... Richmond T, et al. An integrated tool to study MHC region: accurate SNV detection and HLA genes typing in human MHC region using targeted high-throughput sequencing. Plos One. 8: e69388. PMID 23894464 DOI: 10.1371/Journal.Pone.0069388 |
0.347 |
|
| 2013 |
de Ligt J, Boone PM, Pfundt R, Vissers LE, Richmond T, Geoghegan J, O'Moore K, de Leeuw N, Shaw C, Brunner HG, Lupski JR, Veltman JA, Hehir-Kwa JY. Detection of clinically relevant copy number variants with whole-exome sequencing. Human Mutation. 34: 1439-48. PMID 23893877 DOI: 10.1002/humu.22387 |
0.415 |
|
| 2013 |
Mascher M, Richmond TA, Gerhardt DJ, Himmelbach A, Clissold L, Sampath D, Ayling S, Steuernagel B, Pfeifer M, D'Ascenzo M, Akhunov ED, Hedley PE, Gonzales AM, Morrell PL, Kilian B, et al. Barley whole exome capture: a tool for genomic research in the genus Hordeum and beyond. The Plant Journal : For Cell and Molecular Biology. 76: 494-505. PMID 23889683 DOI: 10.1111/Tpj.12294 |
0.529 |
|
| 2013 |
Muñoz-Amatriaín M, Eichten SR, Wicker T, Richmond TA, Mascher M, Steuernagel B, Scholz U, Ariyadasa R, Spannagl M, Nussbaumer T, Mayer KF, Taudien S, Platzer M, Jeddeloh JA, Springer NM, et al. Distribution, functional impact, and origin mechanisms of copy number variation in the barley genome. Genome Biology. 14: R58. PMID 23758725 DOI: 10.1186/Gb-2013-14-6-R58 |
0.429 |
|
| 2012 |
Liu S, Ying K, Yeh CT, Yang J, Swanson-Wagner R, Wu W, Richmond T, Gerhardt DJ, Lai J, Springer N, Nettleton D, Jeddeloh JA, Schnable PS. Changes in genome content generated via segregation of non-allelic homologs. The Plant Journal : For Cell and Molecular Biology. 72: 390-9. PMID 22731681 DOI: 10.1111/J.1365-313X.2012.05087.X |
0.524 |
|
| 2012 |
Winfield MO, Wilkinson PA, Allen AM, Barker GL, Coghill JA, Burridge A, Hall A, Brenchley RC, D'Amore R, Hall N, Bevan MW, Richmond T, Gerhardt DJ, Jeddeloh JA, Edwards KJ. Targeted re-sequencing of the allohexaploid wheat exome. Plant Biotechnology Journal. 10: 733-42. PMID 22703335 DOI: 10.1111/J.1467-7652.2012.00713.X |
0.558 |
|
| 2011 |
Haun WJ, Hyten DL, Xu WW, Gerhardt DJ, Albert TJ, Richmond T, Jeddeloh JA, Jia G, Springer NM, Vance CP, Stupar RM. The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiology. 155: 645-55. PMID 21115807 DOI: 10.1104/Pp.110.166736 |
0.517 |
|
| 2010 |
Fu Y, Springer NM, Ying K, Yeh CT, Iniguez AL, Richmond T, Wu W, Barbazuk B, Nettleton D, Jeddeloh J, Schnable PS. High-resolution genotyping via whole genome hybridizations to microarrays containing long oligonucleotide probes. Plos One. 5: e14178. PMID 21152036 DOI: 10.1371/Journal.Pone.0014178 |
0.485 |
|
| 2010 |
Bainbridge MN, Wang M, Burgess DL, Kovar C, Rodesch MJ, D'Ascenzo M, Kitzman J, Wu YQ, Newsham I, Richmond TA, Jeddeloh JA, Muzny D, Albert TJ, Gibbs RA. Whole exome capture in solution with 3 Gbp of data. Genome Biology. 11: R62. PMID 20565776 DOI: 10.1186/Gb-2010-11-6-R62 |
0.429 |
|
| 2010 |
Fu Y, Springer NM, Gerhardt DJ, Ying K, Yeh CT, Wu W, Swanson-Wagner R, D'Ascenzo M, Millard T, Freeberg L, Aoyama N, Kitzman J, Burgess D, Richmond T, Albert TJ, et al. Repeat subtraction-mediated sequence capture from a complex genome. The Plant Journal : For Cell and Molecular Biology. 62: 898-909. PMID 20230488 DOI: 10.1111/J.1365-313X.2010.04196.X |
0.532 |
|
| 2009 |
Springer NM, Ying K, Fu Y, Ji T, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, Iniguez AL, Barbazuk WB, Jeddeloh JA, Nettleton D, Schnable PS. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. Plos Genetics. 5: e1000734. PMID 19956538 DOI: 10.1371/Journal.Pgen.1000734 |
0.513 |
|
| 2009 |
Walter MJ, Payton JE, Ries RE, Shannon WD, Deshmukh H, Zhao Y, Baty J, Heath S, Westervelt P, Watson MA, Tomasson MH, Nagarajan R, O'Gara BP, Bloomfield CD, Mrózek K, ... ... Richmond TA, et al. Acquired copy number alterations in adult acute myeloid leukemia genomes. Proceedings of the National Academy of Sciences of the United States of America. 106: 12950-5. PMID 19651600 DOI: 10.1073/Pnas.0903091106 |
0.464 |
|
| 2009 |
D'Ascenzo M, Meacham C, Kitzman J, Middle C, Knight J, Winer R, Kukricar M, Richmond T, Albert TJ, Czechanski A, Donahue LR, Affourtit J, Jeddeloh JA, Reinholdt L. Mutation discovery in the mouse using genetically guided array capture and resequencing Mammalian Genome. 20: 424-436. PMID 19629596 DOI: 10.1007/S00335-009-9200-Y |
0.386 |
|
| 2009 |
Oda M, Glass JL, Thompson RF, Mo Y, Olivier EN, Figueroa ME, Selzer RR, Richmond TA, Zhang X, Dannenberg L, Green RD, Melnick A, Hatchwell E, Bouhassira EE, Verma A, et al. High-resolution genome-wide cytosine methylation profiling with simultaneous copy number analysis and optimization for limited cell numbers. Nucleic Acids Research. 37: 3829-39. PMID 19386619 DOI: 10.1093/Nar/Gkp260 |
0.468 |
|
| 2008 |
Matejková P, Strouhal M, Smajs D, Norris SJ, Palzkill T, Petrosino JF, Sodergren E, Norton JE, Singh J, Richmond TA, Molla MN, Albert TJ, Weinstock GM. Complete genome sequence of Treponema pallidum ssp. pallidum strain SS14 determined with oligonucleotide arrays. Bmc Microbiology. 8: 76. PMID 18482458 DOI: 10.1186/1471-2180-8-76 |
0.34 |
|
| 2008 |
Thompson RF, Reimers M, Khulan B, Gissot M, Richmond TA, Chen Q, Zheng X, Kim K, Greally JM. An analytical pipeline for genomic representations used for cytosine methylation studies. Bioinformatics (Oxford, England). 24: 1161-7. PMID 18353789 DOI: 10.1093/Bioinformatics/Btn096 |
0.377 |
|
| 2008 |
Cahan P, Godfrey LE, Eis PS, Richmond TA, Selzer RR, Brent M, McLeod HL, Ley TJ, Graubert TA. wuHMM: a robust algorithm to detect DNA copy number variation using long oligonucleotide microarray data. Nucleic Acids Research. 36: e41. PMID 18334530 DOI: 10.1093/Nar/Gkn110 |
0.375 |
|
| 2007 |
McCormick MR, Selzer RR, Richmond TA. Methods in high-resolution, array-based comparative genomic hybridization. Methods in Molecular Biology (Clifton, N.J.). 381: 189-211. PMID 17984520 DOI: 10.1007/978-1-59745-303-5_9 |
0.354 |
|
| 2007 |
Albert TJ, Molla MN, Muzny DM, Nazareth L, Wheeler D, Song X, Richmond TA, Middle CM, Rodesch MJ, Packard CJ, Weinstock GM, Gibbs RA. Direct selection of human genomic loci by microarray hybridization. Nature Methods. 4: 903-5. PMID 17934467 DOI: 10.1038/Nmeth1111 |
0.481 |
|
| 2007 |
Birney E, Stamatoyannopoulos JA, Dutta A, Guigó R, Gingeras TR, Margulies EH, Weng Z, Snyder M, Dermitzakis ET, Thurman RE, Kuehn MS, Taylor CM, Neph S, Koch CM, ... ... Richmond TA, et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447: 799-816. PMID 17571346 DOI: 10.1038/Nature05874 |
0.421 |
|
| 2007 |
Maydan JS, Flibotte S, Edgley ML, Lau J, Selzer RR, Richmond TA, Pofahl NJ, Thomas JH, Moerman DG. Efficient high-resolution deletion discovery in Caenorhabditis elegans by array comparative genomic hybridization. Genome Research. 17: 337-47. PMID 17267812 DOI: 10.1101/Gr.5690307 |
0.329 |
|
| 2007 |
Graubert TA, Cahan P, Edwin D, Selzer RR, Richmond TA, Eis PS, Shannon WD, Li X, McLeod HL, Cheverud JM, Ley TJ. A high-resolution map of segmental DNA copy number variation in the mouse genome. Plos Genetics. 3: e3. PMID 17206864 DOI: 10.1371/Journal.Pgen.0030003 |
0.409 |
|
| 2006 |
Sharp AJ, Hansen S, Selzer RR, Cheng Z, Regan R, Hurst JA, Stewart H, Price SM, Blair E, Hennekam RC, Fitzpatrick CA, Segraves R, Richmond TA, Guiver C, Albertson DG, et al. Discovery of previously unidentified genomic disorders from the duplication architecture of the human genome. Nature Genetics. 38: 1038-42. PMID 16906162 DOI: 10.1038/Ng1862 |
0.366 |
|
| 2006 |
Sabo PJ, Kuehn MS, Thurman R, Johnson BE, Johnson EM, Cao H, Yu M, Rosenzweig E, Goldy J, Haydock A, Weaver M, Shafer A, Lee K, Neri F, Humbert R, ... ... Richmond TA, et al. Genome-scale mapping of DNase I sensitivity in vivo using tiling DNA microarrays. Nature Methods. 3: 511-8. PMID 16791208 DOI: 10.1038/Nmeth890 |
0.367 |
|
| 2006 |
Strefford JC, van Delft FW, Robinson HM, Worley H, Yiannikouris O, Selzer R, Richmond T, Hann I, Bellotti T, Raghavan M, Young BD, Saha V, Harrison CJ. Complex genomic alterations and gene expression in acute lymphoblastic leukemia with intrachromosomal amplification of chromosome 21. Proceedings of the National Academy of Sciences of the United States of America. 103: 8167-72. PMID 16702559 DOI: 10.1073/pnas.0602360103 |
0.323 |
|
| 2006 |
Urban AE, Korbel JO, Selzer R, Richmond T, Hacker A, Popescu GV, Cubells JF, Green R, Emanuel BS, Gerstein MB, Weissman SM, Snyder M. High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays. Proceedings of the National Academy of Sciences of the United States of America. 103: 4534-9. PMID 16537408 DOI: 10.1073/Pnas.0511340103 |
0.335 |
|
| 2005 |
Albert TJ, Dailidiene D, Dailide G, Norton JE, Kalia A, Richmond TA, Molla M, Singh J, Green RD, Berg DE. Mutation discovery in bacterial genomes: metronidazole resistance in Helicobacter pylori. Nature Methods. 2: 951-3. PMID 16299480 DOI: 10.1038/Nmeth805 |
0.393 |
|
| 2005 |
Kim TH, Barrera LO, Zheng M, Qu C, Singer MA, Richmond TA, Wu Y, Green RD, Ren B. A high-resolution map of active promoters in the human genome. Nature. 436: 876-80. PMID 15988478 DOI: 10.1038/Nature03877 |
0.33 |
|
| 2004 |
Wong CW, Albert TJ, Vega VB, Norton JE, Cutler DJ, Richmond TA, Stanton LW, Liu ET, Miller LD. Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays. Genome Research. 14: 398-405. PMID 14993206 DOI: 10.1101/Gr.2141004 |
0.46 |
|
| 2000 |
Richmond T, Somerville S. Chasing the dream: plant EST microarrays. Current Opinion in Plant Biology. 3: 108-16. PMID 10712953 DOI: 10.1016/S1369-5266(99)00049-7 |
0.361 |
|
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