Aditya Manohar Rao, BA - Related publications

Affiliations: 
Stanford University Medical School 
Area:
Computational Immunology, Immunology, Bioinformatics
NOTE: We are testing a new system for identifying relevant work based on semantic analysis that identifies similarities between recently published papers and the current author's publications. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches.
50 most relevant papers in past 60 days:
Year Citation  Score
2021 Gautam P, Sharma A, Bhatnagar A. Global histone modification analysis reveals hypoacetylated H3 and H4 histones in B Cells from systemic lupus erythematosus patients. Immunology Letters. 240: 41-45. PMID 34614442 DOI: 10.1016/j.imlet.2021.09.007   
2021 Galloy M, Lachance C, Cheng X, Distéfano-Gagné F, Côté J, Fradet-Turcotte A. Approaches to Study Native Chromatin-Modifying Complex Activities and Functions. Frontiers in Cell and Developmental Biology. 9: 729338. PMID 34604228 DOI: 10.3389/fcell.2021.729338   
2021 Reddy D, Bhattacharya S, Shah S, Rashid M, Gupta S. DNA methylation mediated downregulation of histone H3 variant H3.3 affects cell proliferation contributing to the development of HCC. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 1868: 166284. PMID 34626773 DOI: 10.1016/j.bbadis.2021.166284   
2021 Zaib S, Rana N, Khan I. Histone modifications and their role in epigenetics of cancer. Current Medicinal Chemistry. PMID 34749606 DOI: 10.2174/0929867328666211108105214   
2021 Leonen CJA, Shimada M, Weller CE, Nakadai T, Hsu PL, Tyson EL, Mishra A, Shelton PMM, Sadilek M, Hawkins RD, Zheng N, Roeder RG, Chatterjee C. Sumoylation of the human histone H4 tail inhibits p300-mediated transcription by RNA polymerase II in cellular extracts. Elife. 10. PMID 34747692 DOI: 10.7554/eLife.67952   
2021 Hogan AK, Sathyan KM, Willis AB, Khurana S, Srivastava S, Zasadzińska E, Lee AS, Bailey AO, Gaynes MN, Huang J, Bodner J, Rosencrance CD, Wong KA, Morgan MA, Eagen KP, et al. UBR7 acts as a histone chaperone for post-nucleosomal histone H3. The Embo Journal. e108307. PMID 34786730 DOI: 10.15252/embj.2021108307   
2021 Roopa, Priya B, Bhalla V, Kumar M, Kumar N. Fluorescent molecular probe-based activity and inhibition monitoring of histone deacetylases. Chemical Communications (Cambridge, England). 57: 11153-11164. PMID 34613324 DOI: 10.1039/d1cc04034k   
2021 Palli SR. Epigenetic regulation of post-embryonic development. Current Opinion in Insect Science. 43: 63-69. PMID 33068783 DOI: 10.1016/j.cois.2020.09.011   
2021 Kumar VC, Pai R. Genes of the month: H3.3 histone genes: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34667098 DOI: 10.1136/jclinpath-2021-207857   
2021 Poulet A, Mishra LN, Téletchéa S, Hayes JJ, Jacob Y, Thiriet C, Duc C. Identification and characterization of histones in evidence a phylogenetic vicinity of Mycetozoans to the animal kingdom. Nar Genomics and Bioinformatics. 3: lqab107. PMID 34805990 DOI: 10.1093/nargab/lqab107   
2021 Choi J, Ryoo ZY, Cho DH, Lee HS, Ryu HY. Trans-tail regulation-mediated suppression of cryptic transcription. Experimental & Molecular Medicine. PMID 34845331 DOI: 10.1038/s12276-021-00711-x   
2021 Matsui H, Iriyama T, Sayama S, Inaoka N, Suzuki K, Yoshikawa M, Ichinose M, Sone K, Kumasawa K, Nagamatsu T, Fujisawa T, Naguro I, Ichijo H, Fujii T, Osuga Y. Elevated placental histone H3K4 methylation via upregulated histone methyltransferases SETD1A and SMYD3 in preeclampsia and its possible involvement in hypoxia-induced pathophysiological process. Placenta. 115: 60-69. PMID 34560329 DOI: 10.1016/j.placenta.2021.09.009   
2021 Bennett SA, Cobos SN, Mirzakandova M, Fallah M, Son E, Angelakakis G, Rana N, Hugais M, Torrente MP. Trichostatin A Relieves Growth Suppression and Restores Histone Acetylation at Specific Sites in a FUS ALS/FTD Yeast Model. Biochemistry. PMID 34788013 DOI: 10.1021/acs.biochem.1c00455   
2021 Huckriede J, de Vries F, Hultström M, Wichapong K, Reutelingsperger C, Lipcsey M, Garcia de Frutos P, Frithiof R, Nicolaes GAF. Histone H3 Cleavage in Severe COVID-19 ICU Patients. Frontiers in Cellular and Infection Microbiology. 11: 694186. PMID 34568088 DOI: 10.3389/fcimb.2021.694186   
2021 Shen CH, Allan J. MNase Digestion Protection Patterns of the Linker DNA in Chromatosomes. Cells. 10. PMID 34571888 DOI: 10.3390/cells10092239   
2021 Chen B, Ali S, Zhang X, Zhang Y, Wang M, Zhang Q, Xie L. Genome-wide identification, classification, and expression analysis of the JmjC domain-containing histone demethylase gene family in birch. Bmc Genomics. 22: 772. PMID 34711171 DOI: 10.1186/s12864-021-08063-6   
2021 He X, Hui Z, Xu L, Bai R, Gao Y, Wang Z, Xie T, Ye XY. Medicinal chemistry updates of novel HDACs inhibitors (2020 to present). European Journal of Medicinal Chemistry. 227: 113946. PMID 34775332 DOI: 10.1016/j.ejmech.2021.113946   
2021 Bhagwat M, Nagar S, Kaur P, Mehta R, Vancurova I, Vancura A. Replication stress inhibits synthesis of histone mRNAs in yeast by removing Spt10p and Spt21p from the histone promoters. The Journal of Biological Chemistry. 101246. PMID 34582893 DOI: 10.1016/j.jbc.2021.101246   
2021 Popova LV, Nagarajan P, Lovejoy CM, Sunkel BD, Gardner ML, Wang M, Freitas MA, Stanton BZ, Parthun MR. Epigenetic regulation of nuclear lamina-associated heterochromatin by HAT1 and the acetylation of newly synthesized histones. Nucleic Acids Research. PMID 34788845 DOI: 10.1093/nar/gkab1044   
2021 Liu CP, Jin W, Hu J, Wang M, Chen J, Li G, Xu RM. Distinct histone H3-H4 binding modes of sNASP reveal the basis for cooperation and competition of histone chaperones. Genes & Development. PMID 34819355 DOI: 10.1101/gad.349100.121   
2021 Usher ET, Namitz KEW, Cosgrove MS, Showalter SA. Probing multiple enzymatic methylation events in real time with NMR spectroscopy. Biophysical Journal. 120: 4710-4721. PMID 34592262 DOI: 10.1016/j.bpj.2021.09.034   
2021 Fletcher A, Zhao R, Enciso G. Non-cooperative mechanism for bounded and ultrasensitive chromatin remodeling. Journal of Theoretical Biology. 110946. PMID 34717936 DOI: 10.1016/j.jtbi.2021.110946   
2021 Wilson KD, Porter EG, Garcia BA. Reprogramming of the epigenome in neurodevelopmental disorders. Critical Reviews in Biochemistry and Molecular Biology. 1-40. PMID 34601997 DOI: 10.1080/10409238.2021.1979457   
2021 Wang S, Xiang T, Yu L, Wen J, Liu F, Yang D, Wu W, Hu L. Novel Molecular Subtypes and Related Score Based on Histone Acetylation Modification in Renal Clear Cell Carcinoma. Frontiers in Cell and Developmental Biology. 9: 668810. PMID 34631694 DOI: 10.3389/fcell.2021.668810   
2021 Zhao F, Zhang H, Zhao T, Li Z, Jiang D. The histone variant H3.3 promotes the active chromatin state to repress flowering in Arabidopsis. Plant Physiology. 186: 2051-2063. PMID 34618105 DOI: 10.1093/plphys/kiab224   
2021 Xiao C, Fan T, Tian H, Zheng Y, Zhou Z, Li S, Li C, He J. H3K36 trimethylation-mediated biological functions in cancer. Clinical Epigenetics. 13: 199. PMID 34715919 DOI: 10.1186/s13148-021-01187-2   
2021 Shirra MK, Kocik RA, Ellison MA, Arndt KM. Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae. G3 (Bethesda, Md.). PMID 34499735 DOI: 10.1093/g3journal/jkab298   
2021 Khilji S, Li Y, Chen J, Li Q. Multi-Omics Approach to Dissect the Mechanisms of Rexinoid Signaling in Myoblast Differentiation. Frontiers in Pharmacology. 12: 746513. PMID 34603059 DOI: 10.3389/fphar.2021.746513   
2021 Rico T, Gilles M, Chauderlier A, Comptdaer T, Magnez R, Chwastyniak M, Drobecq H, Pinet F, Thuru X, Buée L, Galas MC, Lefebvre B. Tau Stabilizes Chromatin Compaction. Frontiers in Cell and Developmental Biology. 9: 740550. PMID 34722523 DOI: 10.3389/fcell.2021.740550   
2021 Chen Q, Zhang J, Li G. Dynamic epigenetic modifications in plant sugar signal transduction. Trends in Plant Science. PMID 34865981 DOI: 10.1016/j.tplants.2021.10.009   
2021 Aldera AP, Govender D. Gene of the month: H3F3A and H3F3B. Journal of Clinical Pathology. PMID 34782425 DOI: 10.1136/jclinpath-2021-207751   
2021 Lewis TS, Sokolova V, Jung H, Ng H, Tan D. Structural basis of chromatin regulation by histone variant H2A.Z. Nucleic Acids Research. PMID 34643712 DOI: 10.1093/nar/gkab907   
2021 Swygert SG, Lin D, Portillo-Ledesma S, Lin PY, Hunt DR, Kao CF, Schlick T, Noble WS, Tsukiyama T. Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells. Elife. 10. PMID 34734806 DOI: 10.7554/eLife.72062   
2021 Lai D, Huang X, Wang C, Ow DW. Arabidopsis OXIDATIVE STRESS 3 enhances stress tolerance in Schizosaccharomyces pombe by promoting histone subunit replacement that upregulates drug-resistant genes. Genetics. 219. PMID 34740252 DOI: 10.1093/genetics/iyab149   
2021 Hoekstra M, Biggar KK. Identification of in vitro JMJD lysine demethylase candidate substrates via systematic determination of substrate preference. Analytical Biochemistry. 633: 114429. PMID 34678252 DOI: 10.1016/j.ab.2021.114429   
2021 Bajbouj K, Al-Ali A, Ramakrishnan RK, Saber-Ayad M, Hamid Q. Histone Modification in NSCLC: Molecular Mechanisms and Therapeutic Targets. International Journal of Molecular Sciences. 22. PMID 34769131 DOI: 10.3390/ijms222111701   
2021 Murawska M, Greenstein RA, Schauer T, Olsen KCF, Ng H, Ladurner AG, Al-Sady B, Braun S. The histone chaperone FACT facilitates heterochromatin spreading by regulating histone turnover and H3K9 methylation states. Cell Reports. 37: 109944. PMID 34731638 DOI: 10.1016/j.celrep.2021.109944   
2021 Singh AK, Schauer T, Pfaller L, Straub T, Mueller-Planitz F. The biogenesis and function of nucleosome arrays. Nature Communications. 12: 7011. PMID 34853297 DOI: 10.1038/s41467-021-27285-6   
2021 Ding Q, Edwards MM, Wang N, Zhu X, Bracci AN, Hulke ML, Hu Y, Tong Y, Hsiao J, Charvet CJ, Ghosh S, Handsaker RE, Eggan K, Merkle FT, Gerhardt J, et al. The genetic architecture of DNA replication timing in human pluripotent stem cells. Nature Communications. 12: 6746. PMID 34799581 DOI: 10.1038/s41467-021-27115-9   
2021 King J, Patel M, Chandrasekaran S. Metabolism, HDACs, and HDAC Inhibitors: A Systems Biology Perspective. Metabolites. 11. PMID 34822450 DOI: 10.3390/metabo11110792   
2021 Gao S, Zeng X, Wang J, Xu Y, Yu C, Huang Y, Wang F, Wu K, Yang S. SUMO E3 Ligase SIZ1 Interacts with HDA6 and Negatively Regulates HDA6 Function during Flowering. Cells. 10. PMID 34831226 DOI: 10.3390/cells10113001   
2021 Marcel SS, Quimby AL, Noel MP, Jaimes OC, Mehrab-Mohseni M, Ashur SA, Velasco B, Tsuruta JK, Kasoji SK, Santos CM, Dayton PA, Parker JS, Davis IJ, Pattenden SG. Genome-wide cancer-specific chromatin accessibility patterns derived from archival processed xenograft tumors. Genome Research. PMID 34815311 DOI: 10.1101/gr.275219.121   
2021 Wu DY, Li X, Sun QR, Dou CL, Xu T, He H, Luo H, Fu H, Bu GW, Luo B, Zhang X, Ma BG, Peng C, Miao YL. Defective chromatin architectures in embryonic stem cells derived from somatic cell nuclear transfer impair their differentiation potentials. Cell Death & Disease. 12: 1085. PMID 34785659 DOI: 10.1038/s41419-021-04384-2   
2021 An HJ, Kim Y, Chang S, Kim H, Song J, Park H, Choi I. High-spatial and colourimetric imaging of histone modifications in single senescent cells using plasmonic nanoprobes. Nature Communications. 12: 5899. PMID 34625566 DOI: 10.1038/s41467-021-26224-9   
2021 Terranova CJ, Stemler KM, Barrodia P, Jeter-Jones SL, Ge Z, de la Cruz Bonilla M, Raman A, Cheng CW, Allton KL, Arslan E, Yilmaz ÖH, Barton MC, Rai K, Piwnica-Worms H. Reprogramming of H3K9bhb at regulatory elements is a key feature of fasting in the small intestine. Cell Reports. 37: 110044. PMID 34818540 DOI: 10.1016/j.celrep.2021.110044   
2021 Morgan MAJ, Popova IK, Vaidya A, Burg JM, Marunde MR, Rendleman EJ, Dumar ZJ, Watson R, Meiners MJ, Howard SA, Khalatyan N, Vaughan RM, Rothbart SB, Keogh MC, Shilatifard A. A trivalent nucleosome interaction by PHIP/BRWD2 is disrupted in neurodevelopmental disorders and cancer. Genes & Development. PMID 34819353 DOI: 10.1101/gad.348766.121   
2021 Min S, Lee HS, Ji JH, Heo Y, Kim Y, Chae S, Choi YW, Kang HC, Nakanishi M, Cho H. The chromatin remodeler RSF1 coordinates epigenetic marks for transcriptional repression and DSB repair. Nucleic Acids Research. PMID 34850117 DOI: 10.1093/nar/gkab1093   
2021 Lynch KL, Dillon MR, Bat-Erdene M, Lewis HC, Kaai RJ, Arnold EA, Avgousti DC. A viral histone-like protein exploits antagonism between linker histones and HMGB proteins to obstruct the cell cycle. Current Biology : Cb. PMID 34666003 DOI: 10.1016/j.cub.2021.09.050   
2021 Wu W, Wang J, Xiao C, Su Z, Su H, Zhong W, Mao J, Liu X, Zhu YZ. SMYD2-mediated TRAF2 methylation promotes the NF-κB signaling pathways in inflammatory diseases. Clinical and Translational Medicine. 11: e591. PMID 34841684 DOI: 10.1002/ctm2.591   
2021 Groh S, Milton AV, Marinelli LK, Sickinger CV, Russo A, Bollig H, de Almeida GP, Schmidt A, Forné I, Imhof A, Schotta G. Morc3 silences endogenous retroviruses by enabling Daxx-mediated histone H3.3 incorporation. Nature Communications. 12: 5996. PMID 34650047 DOI: 10.1038/s41467-021-26288-7