| Year |
Citation |
Score |
| 2020 |
Dutta A, Schütz GM, Chowdhury D. Stochastic thermodynamics and modes of operation of a ribosome: A network theoretic perspective. Physical Review. E. 101: 032402. PMID 32289926 DOI: 10.1103/Physreve.101.032402 |
0.316 |
|
| 2020 |
Chowdhury D, Ghanti D. Soft mechano-chemistry of molecular hubs in mitotic spindle: biomechanics and mechanical proofreading at microtubule ends. Journal of Physics. Condensed Matter : An Institute of Physics Journal. PMID 32133984 DOI: 10.1088/1361-648X/Ab7Cc5 |
0.301 |
|
| 2019 |
Mishra B, Chowdhury D. Biologically motivated three-species exclusion model: Effects of leaky scanning and overlapping genes on initiation of protein synthesis. Physical Review. E. 100: 022106. PMID 31574638 DOI: 10.1103/Physreve.100.022106 |
0.315 |
|
| 2019 |
Ghosh S, Dutta A, Patra S, Sato J, Nishinari K, Chowdhury D. Biologically motivated asymmetric exclusion process: Interplay of congestion in RNA polymerase traffic and slippage of nascent transcript. Physical Review. E. 99: 052122. PMID 31212543 DOI: 10.1103/Physreve.99.052122 |
0.317 |
|
| 2018 |
Ghanti D, Patra S, Chowdhury D. Molecular force spectroscopy of kinetochore-microtubule attachment in silico: Mechanical signatures of an unusual catch bond and collective effects. Physical Review. E. 97: 052414. PMID 29906871 DOI: 10.1103/Physreve.97.052414 |
0.301 |
|
| 2018 |
Patra S, Chowdhury D. Multispecies exclusion process with fusion and fission of rods: A model inspired by intraflagellar transport. Physical Review. E. 97: 012138. PMID 29448410 DOI: 10.1103/Physreve.97.012138 |
0.318 |
|
| 2018 |
Ghosh S, Mishra B, Patra S, Schadschneider A, Chowdhury D. A biologically inspired two-species exclusion model: effects of RNA polymerase motor traffic on simultaneous DNA replication Journal of Statistical Mechanics: Theory and Experiment. 2018: 43203. DOI: 10.1088/1742-5468/Aab021 |
0.331 |
|
| 2017 |
Mishra B, Chowdhury D. Interference of two codirectional exclusion processes in the presence of a static bottleneck: A biologically motivated model. Physical Review. E. 95: 062117. PMID 28709297 DOI: 10.1103/Physreve.95.062117 |
0.304 |
|
| 2016 |
Ghosh S, Bameta T, Ghanti D, Chowdhury D. A multispecies exclusion model inspired by transcriptional interference Journal of Statistical Mechanics: Theory and Experiment. 2016: 123501. DOI: 10.1088/1742-5468/Aa50Dd |
0.367 |
|
| 2015 |
Ghanti D, Chowdhury D. Collective cargo hauling by a bundle of parallel microtubules: Bi-directional motion caused by load-dependent polymerization and depolymerization Journal of Statistical Mechanics: Theory and Experiment. 2015. DOI: 10.1088/1742-5468/2015/01/P01008 |
0.305 |
|
| 2014 |
Sharma AK, Shtylla B, Chowdhury D. Distribution of lifetimes of kinetochore-microtubule attachments: interplay of energy landscape, molecular motors and microtubule (de-)polymerization. Physical Biology. 11: 036004. PMID 24759331 DOI: 10.1088/1478-3975/11/3/036004 |
0.305 |
|
| 2013 |
Chowdhury D. Modeling stochastic kinetics of molecular machines at multiple levels: from molecules to modules. Biophysical Journal. 104: 2331-41. PMID 23746505 DOI: 10.1016/J.Bpj.2013.04.042 |
0.303 |
|
| 2011 |
Sharma AK, Chowdhury D. Distribution of dwell times of a ribosome: effects of infidelity, kinetic proofreading and ribosome crowding. Physical Biology. 8: 026005. PMID 21263169 DOI: 10.1088/1478-3975/8/2/026005 |
0.328 |
|
| 2011 |
Garai A, Chowdhury D. Stochastic kinetics of a single-headed motor protein: dwell time distribution of KIF1A Epl. 93: 58004. DOI: 10.1209/0295-5075/93/58004 |
0.326 |
|
| 2009 |
Garai A, Chowdhury D, Chowdhury D, Ramakrishnan TV. Stochastic kinetics of ribosomes: single motor properties and collective behavior. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 011908. PMID 19658730 DOI: 10.1103/Physreve.80.011908 |
0.357 |
|
| 2009 |
John A, Schadschneider A, Chowdhury D, Nishinari K. Trafficlike collective movement of ants on trails: absence of a jammed phase. Physical Review Letters. 102: 108001. PMID 19392163 DOI: 10.1103/Physrevlett.102.108001 |
0.309 |
|
| 2009 |
Garai A, Chowdhury D, Ramakrishnan TV. Fluctuations in protein synthesis from a single RNA template: stochastic kinetics of ribosomes. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 79: 011916. PMID 19257078 DOI: 10.1103/Physreve.79.011916 |
0.327 |
|
| 2009 |
Tripathi T, Schütz GM, Chowdhury D. RNA polymerase motors: dwell time distribution, velocity and dynamical phases Journal of Statistical Mechanics: Theory and Experiment. 2009: 8018. DOI: 10.1088/1742-5468/2009/08/P08018 |
0.338 |
|
| 2008 |
Garai A, Chowdhury D, Betterton MD. Two-state model for helicase translocation and unwinding of nucleic acids. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 061910. PMID 18643303 DOI: 10.1103/Physreve.77.061910 |
0.359 |
|
| 2008 |
Chowdhury D, Garai A, Wang JS. Traffic of single-headed motor proteins KIF1A: effects of lane changing. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 050902. PMID 18643016 DOI: 10.1103/Physreve.77.050902 |
0.517 |
|
| 2008 |
Tripathi T, Chowdhury D. Transcriptional bursts: A unified model of machines and mechanisms Epl. 84: 68004. DOI: 10.1209/0295-5075/84/68004 |
0.307 |
|
| 2008 |
Govindan BS, Gopalakrishnan M, Chowdhury D. Length control of microtubules by depolymerizing motor proteins Epl. 83. DOI: 10.1209/0295-5075/83/40006 |
0.309 |
|
| 2008 |
Chowdhury D, Basu A, Garai A, Greulich P, Nishinari K, Schadschneider A, Tripathi T. Intra-cellular traffic: bio-molecular motors on filamentary tracks European Physical Journal B. 64: 593-600. DOI: 10.1140/Epjb/E2008-00073-5 |
0.322 |
|
| 2007 |
Greulich P, Garai A, Nishinari K, Schadschneider A, Chowdhury D. Intracellular transport by single-headed kinesin KIF1A: effects of single-motor mechanochemistry and steric interactions. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 041905. PMID 17500919 DOI: 10.1103/Physreve.75.041905 |
0.377 |
|
| 2007 |
Basu A, Chowdhury D. Traffic of interacting ribosomes: effects of single-machine mechanochemistry on protein synthesis. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 75: 021902. PMID 17358362 DOI: 10.1103/Physreve.75.021902 |
0.32 |
|
| 2007 |
Basu A, Chowdhury D. Modeling protein synthesis from a physicist’s perspective: A toy model American Journal of Physics. 75: 931-937. DOI: 10.1119/1.2757628 |
0.31 |
|
| 2006 |
Kunwar A, Chowdhury D, Schadschneider A, Nishinari K. Competition of coarsening and shredding of clusters in a driven diffusive lattice gas Journal of Statistical Mechanics: Theory and Experiment. 2006: 6012. DOI: 10.1088/1742-5468/2006/06/P06012 |
0.302 |
|
| 2006 |
Kunwar A, Schadschneider A, Chowdhury D. From aggressive driving to molecular motor traffic Journal of Physics a: Mathematical and General. 39: 14263-14287. DOI: 10.1088/0305-4470/39/46/003 |
0.333 |
|
| 2006 |
Nishinari K, Sugawara K, Kazama T, Schadschneider A, Chowdhury D. Modelling of self-driven particles: foraging ants and pedestrians Physica a-Statistical Mechanics and Its Applications. 372: 132-141. DOI: 10.1016/J.Physa.2006.05.016 |
0.374 |
|
| 2006 |
Chowdhury D. Collective effects in intra-cellular molecular motor transport: Coordination, cooperation and competition ☆ Physica a-Statistical Mechanics and Its Applications. 372: 84-95. DOI: 10.1016/J.Physa.2006.05.005 |
0.307 |
|
| 2005 |
Nishinari K, Okada Y, Schadschneider A, Chowdhury D. Intracellular transport of single-headed molecular motors KIF1A. Physical Review Letters. 95: 118101. PMID 16197050 DOI: 10.1103/Physrevlett.95.118101 |
0.33 |
|
| 2005 |
Chowdhury D, Stauffer D. Evolutionary ecology in silico: Does mathematical modelling help in understanding 'generic' trends? Journal of Biosciences. 30: 277-87. PMID 15886463 DOI: 10.1007/Bf02703709 |
0.531 |
|
| 2005 |
Chowdhury D, Schadschneider A, Nishinari K. Physics of Transport and Traffic Phenomena in Biology: from molecular motors and cells to organisms Physics of Life Reviews. 2: 318-352. DOI: 10.1016/J.Plrev.2005.09.001 |
0.306 |
|
| 2005 |
Stauffer D, Kunwar A, Chowdhury D. Evolutionary ecology in silico: evolving food webs, migrating population and speciation Physica a: Statistical Mechanics and Its Applications. 352: 202-215. DOI: 10.1016/J.Physa.2004.12.036 |
0.514 |
|
| 2005 |
Chowdhury D, Stauffer D. Evolving eco-system: a network of networks Physica a: Statistical Mechanics and Its Applications. 346: 68-74. DOI: 10.1016/J.Physa.2004.08.051 |
0.497 |
|
| 2004 |
John A, Schadschneider A, Chowdhury D, Nishinari K. Collective effects in traffic on bi-directional ant trails. Journal of Theoretical Biology. 231: 279-85. PMID 15380392 DOI: 10.1016/J.Jtbi.2004.06.022 |
0.337 |
|
| 2004 |
Kunwar A, John A, Nishinari K, Schadschneider A, Chowdhury D. Collective Traffic-like Movement of Ants on a Trail: Dynamical Phases and Phase Transitions Journal of the Physical Society of Japan. 73: 2979-2985. DOI: 10.1143/Jpsj.73.2979 |
0.348 |
|
| 2004 |
Chowdhury D, Stauffer D. Computer simulations of history of life: speciation, emergence of complex species from simpler organisms, and extinctions Physica a: Statistical Mechanics and Its Applications. 340: 685-696. DOI: 10.1016/J.Physa.2004.05.023 |
0.482 |
|
| 2004 |
Stauffer D, Chowdhury D. Unified “micro”- and “macro-” evolution of eco-systems: self-organization of a dynamic network Physica a: Statistical Mechanics and Its Applications. 336: 102-111. DOI: 10.1016/J.Physa.2004.01.015 |
0.489 |
|
| 2003 |
Chowdhury D, Stauffer D. Food-web based unified model of macro- and microevolution. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 041901. PMID 14682967 DOI: 10.1103/Physreve.68.041901 |
0.504 |
|
| 2003 |
Nishinari K, Chowdhury D, Schadschneider A. Cluster formation and anomalous fundamental diagram in an ant-trail model. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 036120. PMID 12689145 DOI: 10.1103/Physreve.67.036120 |
0.322 |
|
| 2003 |
Chowdhury D, Stauffer D, Kunwar A. Unification of small and large time scales for biological evolution: deviations from power law. Physical Review Letters. 90: 068101. PMID 12633332 DOI: 10.1103/Physrevlett.90.068101 |
0.476 |
|
| 2003 |
Chowdhury D. Traffic flow of interacting self-driven particles: Rails and trails, vehicles and vesicles Physica Scripta. 106: 13-18. DOI: 10.1238/Physica.Topical.106A00013 |
0.333 |
|
| 2003 |
Chowdhury D, Stauffer D. Sole–Manrubia model of biological evolutions: some new insights Physica a: Statistical Mechanics and Its Applications. 318: 461-468. DOI: 10.1016/S0378-4371(02)01378-X |
0.518 |
|
| 2002 |
Chowdhury D, Wang JS. Flow properties of driven-diffusive lattice gases: theory and computer simulation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 65: 046126. PMID 12005945 DOI: 10.1103/Physreve.65.046126 |
0.544 |
|
| 2002 |
Chowdhury D, Stauffer D, Strey R. Periodicity-dependent stiffness of periodic hydrophilic-hydrophobic heteropolymers. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 60: R1158-61. PMID 11969942 DOI: 10.1103/Physreve.60.R1158 |
0.477 |
|
| 2002 |
Chowdhury D, Guttal V, Nishinari K, Schadschneider A. A cellular-automata model of flow in ant trails: non-monotonic variation of speed with density Journal of Physics A. 35. DOI: 10.1088/0305-4470/35/41/103 |
0.302 |
|
| 2000 |
Maiti PK, Kremer K, Flimm O, Chowdhury D, Stauffer D. Cross-Linking of Micelles by Gemini Surfactants Langmuir. 16: 3784-3790. DOI: 10.1021/La9914458 |
0.455 |
|
| 2000 |
Chowdhury D, Santen L, Schadschneider A. Statistical physics of vehicular traffic and some related systems Physics Reports. 329: 199-329. DOI: 10.1016/S0370-1573(99)00117-9 |
0.357 |
|
| 2000 |
Chowdhury D, Desai RC. Steady-states and kinetics of ordering in bus-route models: connection with the Nagel-Schreckenberg model European Physical Journal B. 15: 375-384. DOI: 10.1007/S100510051139 |
0.375 |
|
| 1999 |
Chowdhury D, Schadschneider A. Self-organization of traffic jams in cities: effects of stochastic dynamics and signal periods Physical Review E. 59. DOI: 10.1103/Physreve.59.R1311 |
0.351 |
|
| 1999 |
Chowdhury D, Santen L, Schadschneider A, Sinha S, Pasupathy A. Spatio-temporal organization of vehicles in a cellular automata model of traffic with 'slow-to-start' rule Journal of Physics a: Mathematical and General. 32: 3229-3252. DOI: 10.1088/0305-4470/32/18/303 |
0.37 |
|
| 1999 |
Chowdhury D, Stauffer D. A generalized spin model of financial markets The European Physical Journal B. 8: 477-482. DOI: 10.1007/S100510050714 |
0.494 |
|
| 1998 |
Maiti PK, Chowdhury D. Micellar aggregates of gemini surfactants: Monte Carlo simulation of a microscopic model Epl. 41: 183-188. DOI: 10.1209/Epl/I1998-00128-3 |
0.335 |
|
| 1998 |
Maiti PK, Chowdhury D. Discrete Solid-On-Solid Model of Interface with Bending Rigidity: Restricted and Unrestricted Step Sizes International Journal of Modern Physics B. 12: 1531-1538. DOI: 10.1142/S021797929800291X |
0.338 |
|
| 1998 |
Ghosh K, Majumdar A, Chowdhury D. Distribution of time-headways in a particle-hopping model of vehicular traffic Physical Review E. 58: 4012-4015. DOI: 10.1103/Physreve.58.4012 |
0.34 |
|
| 1998 |
Maiti PK, Chowdhury D. A microscopic model of gemini surfactants: self-assemblies in water and at air-water interface Journal of Chemical Physics. 109: 5126-5133. DOI: 10.1063/1.477127 |
0.313 |
|
| 1998 |
Chowdhury D, Pasupathy A, Sinha S. Distributions of time- and distance-headways in the Nagel-Schreckenberg model of vehicular traffic: Effects of hindrances European Physical Journal B. 5: 781-786. DOI: 10.1007/S100510050502 |
0.337 |
|
| 1997 |
Maiti PK, Chowdhury D. Numerical Approach to Statistical Mechanics of Surfactants in Porous Media: A Coarse Grained Description International Journal of Modern Physics C. 8: 1335-1343. DOI: 10.1142/S0129183197001181 |
0.305 |
|
| 1997 |
Chowdhury D, Maiti PK, Sabhapandit S, Taneja P. Out-of-plane phase segregation and in-plane clustering in a binary mixture of amphiphiles at the air-water interface Physical Review E. 56: 667-679. DOI: 10.1103/Physreve.56.667 |
0.307 |
|
| 1997 |
Ktitarev DV, Chowdhury D, Wolf DE. Stochastic traffic model with random deceleration probabilities: queueing and power-law gap distribution Journal of Physics A. 30. DOI: 10.1088/0305-4470/30/8/004 |
0.357 |
|
| 1997 |
Chowdhury D, Ghosh K, Majumdar A, Sinha S, Stinchcombe RB. Particle-hopping models of vehicular traffic: Distributions of distance headways and distance between jams Physica a: Statistical Mechanics and Its Applications. 246: 471-486. DOI: 10.1016/S0378-4371(97)00365-8 |
0.332 |
|
| 1997 |
Chowdhury D, Wolf DE, Schreckenberg M. Particle hopping models for two-lane traffic with two kinds of vehicles: Effects of lane-changing rules Physica a-Statistical Mechanics and Its Applications. 235: 417-439. DOI: 10.1016/S0378-4371(96)00314-7 |
0.345 |
|
| 1996 |
Maiti PK, Chowdhury D, Bhattacharjee JK. Discrete solid-on-solid model of interface with bending rigidity: Roughening versus crumpling. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 54: 2670-2676. PMID 9965380 DOI: 10.1103/Physreve.54.2670 |
0.333 |
|
| 1996 |
CHOWDHURY D, BERNARDES AT, STAUFFER D. CONFORMATION OF AMPHIPHILIC MOLECULES GRAFTED OR ADSORBED ON A SOLID SUBSTRATE: MONTE CARLO SIMULATION International Journal of Modern Physics C. 7: 73-88. DOI: 10.1142/S0129183196000089 |
0.5 |
|
| 1995 |
Chowdhury D. Monte Carlo simulation of spatio-temporal organization of amphiphiles in water and air-water interface Journal De Physique Ii. 5: 1469-1489. DOI: 10.1051/Jp2:1995194 |
0.332 |
|
| 1995 |
Maiti PK, Chowdhury D. Oil-Water Interface in the Widom Model: Is It Smooth, Rough or Crumpled? Journal De Physique I. 5: 671-674. DOI: 10.1051/Jp1:1995108 |
0.338 |
|
| 1994 |
CHOWDHURY D, DESHPANDE V, STAUFFER D. MODELING IMMUNE NETWORK THROUGH CELLULAR AUTOMATA: A UNIFIED MECHANISM OF IMMUNOLOGICAL MEMORY International Journal of Modern Physics C. 5: 1049-1072. DOI: 10.1142/S0129183194001148 |
0.466 |
|
| 1993 |
Chowdhury D. A unified model of immune response. II: Continuum approach. Journal of Theoretical Biology. 165: 135-159. PMID 8289459 DOI: 10.1006/Jtbi.1993.1180 |
0.318 |
|
| 1992 |
Morawietz D, Chowdhury D, Vollmar S, Stauffer D. Simulation of Widom model kinetics for microemulsions Physica a: Statistical Mechanics and Its Applications. 187: 126-132. DOI: 10.1016/0378-4371(92)90413-K |
0.512 |
|
| 1991 |
Chowdhury D, Stauffer D. Lifetime of unstable bilayers: A lattice model for amphiphilic membranes. Physical Review A. 44. PMID 9906269 DOI: 10.1103/Physreva.44.R2247 |
0.495 |
|
| 1991 |
Chowdhury D, Sahimi M, Stauffer D. A discrete model for immune surveillance, tumor immunity and cancer Journal of Theoretical Biology. 152: 263-270. PMID 1753781 DOI: 10.1016/S0022-5193(05)80457-6 |
0.441 |
|
| 1991 |
Puri S, Chowdhury D, Parekh N. Non-algebraic domain growth in random magnets: a cell dynamical approach Journal of Physics a: Mathematical and General. 24: L1087-L1097. DOI: 10.1088/0305-4470/24/18/005 |
0.329 |
|
| 1991 |
Chowdhury D, Stauffer D. Amphiphilic membranes in thin films of a complex fluid: Statics and dynamics in lattice models The Journal of Chemical Physics. 95: 7664-7677. DOI: 10.1063/1.461340 |
0.506 |
|
| 1989 |
Wang J, Chowdhury D. The critical behaviour of the three-dimensional dilute Ising model : universality and the Harris criterion Journal De Physique. 50: 2905-2910. DOI: 10.1051/Jphys:0198900500190290500 |
0.479 |
|
| 1988 |
Chowdhury D. Morphology of growing interfacial patterns Journal of Statistical Physics. 50: 1111-1130. DOI: 10.1007/Bf01019156 |
0.331 |
|
| 1986 |
Chakrabarti BK, Chowdhury D, Stauffer D. Molecular dynamic study of fracture in 2D disordered elastic Lennard-Jones solids Zeitschrift F�R Physik B Condensed Matter. 62: 343-347. DOI: 10.1007/Bf01313457 |
0.437 |
|
| 1984 |
Chowdhury D, Mookerjee A. Percolation model, Sherrington-Kirkpatrick model and localization-delocalization model of spin glass transition: A comparative study Physics Letters A. 100: 513-515. DOI: 10.1016/0375-9601(84)90839-9 |
0.33 |
|
| 1984 |
Bhattacharjee JK, Banerjee K, Chowdhury D, Saravanan R, Manna S. Limit cycles in a forced Lorenz system Physics Letters A. 104: 33-35. DOI: 10.1016/0375-9601(84)90582-6 |
0.541 |
|
| 1984 |
Chowdhury D, Mookerjee A. Mean-field theories of spin glasses Physics Reports. 114: 1-98. DOI: 10.1016/0370-1573(84)90017-6 |
0.333 |
|
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