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Drew Endy - Publications

Affiliations: 
1997 Dartmouth College, Hanover, NH, United States 
 2008 Massachusetts Institute of Technology, Cambridge, MA, United States 
 2008- Bioengineering Stanford University, Palo Alto, CA 
Area:
Bioengineering
Website:
https://engineering.stanford.edu/people/drew-endy
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Dhillon N, Shelansky R, Townshend B, Jain M, Boeger H, Endy D, Kamakaka R. Permutational analysis of regulatory elements. Synthetic Biology (Oxford, England). 5: ysaa007. PMID 32775697 DOI: 10.1093/Synbio/Ysaa007  0.33
2019 Jaschke PR, Dotson GA, Hung KS, Liu D, Endy D. Definitive demonstration by synthesis of genome annotation completeness. Proceedings of the National Academy of Sciences of the United States of America. PMID 31719208 DOI: 10.1073/Pnas.1905990116  0.381
2019 Calles J, Justice I, Brinkley D, Garcia A, Endy D. Fail-safe genetic codes designed to intrinsically contain engineered organisms. Nucleic Acids Research. 47: 10439-10451. PMID 31511890 DOI: 10.1093/Nar/Gkz745  0.343
2017 Hecht A, Glasgow J, Jaschke PR, Bawazer LA, Munson MS, Cochran JR, Endy D, Salit M. Measurements of translation initiation from all 64 codons in E. coli. Nucleic Acids Research. PMID 28334756 DOI: 10.1093/Nar/Gkx070  0.318
2016 Nuñez IN, Matute TF, Del Valle I, Kan A, Choksi A, Endy D, Haseloff J, Rudge T, Federici F. Artificial symmetry-breaking for morphogenetic engineering bacterial colonies. Acs Synthetic Biology. PMID 27794593 DOI: 10.1021/Acssynbio.6B00149  0.376
2014 Galdzicki M, Clancy KP, Oberortner E, Pocock M, Quinn JY, Rodriguez CA, Roehner N, Wilson ML, Adam L, Anderson JC, Bartley BA, Beal J, Chandran D, Chen J, Densmore D, ... Endy D, et al. The Synthetic Biology Open Language (SBOL) provides a community standard for communicating designs in synthetic biology. Nature Biotechnology. 32: 545-50. PMID 24911500 DOI: 10.1038/Nbt.2891  0.302
2013 Kosuri S, Goodman DB, Cambray G, Mutalik VK, Gao Y, Arkin AP, Endy D, Church GM. Composability of regulatory sequences controlling transcription and translation in Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America. 110: 14024-9. PMID 23924614 DOI: 10.1073/Pnas.1301301110  0.686
2013 Bonnet J, Yin P, Ortiz ME, Subsoontorn P, Endy D. Amplifying genetic logic gates. Science (New York, N.Y.). 340: 599-603. PMID 23539178 DOI: 10.1126/Science.1232758  0.337
2013 Cambray G, Guimaraes JC, Mutalik VK, Lam C, Mai QA, Thimmaiah T, Carothers JM, Arkin AP, Endy D. Measurement and modeling of intrinsic transcription terminators. Nucleic Acids Research. 41: 5139-48. PMID 23511967 DOI: 10.1093/Nar/Gkt163  0.337
2013 Mutalik VK, Guimaraes JC, Cambray G, Mai QA, Christoffersen MJ, Martin L, Yu A, Lam C, Rodriguez C, Bennett G, Keasling JD, Endy D, Arkin AP. Quantitative estimation of activity and quality for collections of functional genetic elements. Nature Methods. 10: 347-53. PMID 23474467 DOI: 10.1038/Nmeth.2403  0.315
2013 Mutalik VK, Guimaraes JC, Cambray G, Lam C, Christoffersen MJ, Mai QA, Tran AB, Paull M, Keasling JD, Arkin AP, Endy D. Precise and reliable gene expression via standard transcription and translation initiation elements. Nature Methods. 10: 354-60. PMID 23474465 DOI: 10.1038/Nmeth.2404  0.392
2012 Ghosh D, Kohli AG, Moser F, Endy D, Belcher AM. Refactored M13 bacteriophage as a platform for tumor cell imaging and drug delivery. Acs Synthetic Biology. 1: 576-82. PMID 23656279 DOI: 10.1021/Sb300052U  0.366
2012 Jaschke PR, Lieberman EK, Rodriguez J, Sierra A, Endy D. A fully decompressed synthetic bacteriophage øX174 genome assembled and archived in yeast. Virology. 434: 278-84. PMID 23079106 DOI: 10.1016/J.Virol.2012.09.020  0.35
2012 Ortiz ME, Endy D. Engineered cell-cell communication via DNA messaging. Journal of Biological Engineering. 6: 16. PMID 22958599 DOI: 10.1186/1754-1611-6-16  0.341
2012 Bonnet J, Subsoontorn P, Endy D. Rewritable digital data storage in live cells via engineered control of recombination directionality. Proceedings of the National Academy of Sciences of the United States of America. 109: 8884-9. PMID 22615351 DOI: 10.1073/Pnas.1202344109  0.387
2012 Subsoontorn P, Endy D. Design and analysis of genetically encoded counters Procedia Computer Science. 11: 43-54. DOI: 10.1016/J.Procs.2012.09.006  0.323
2010 Collins JJ, Endy D, Hutchison CA, Roberts RJ. Editorial-synthetic biology. Nucleic Acids Research. 38: 2513. PMID 20423911 DOI: 10.1093/Nar/Gkq221  0.435
2009 Martin L, Che A, Endy D. Gemini, a bifunctional enzymatic and fluorescent reporter of gene expression. Plos One. 4: e7569. PMID 19888458 DOI: 10.1371/Journal.Pone.0007569  0.315
2009 Kelly JR, Rubin AJ, Davis JH, Ajo-Franklin CM, Cumbers J, Czar MJ, de Mora K, Glieberman AL, Monie DD, Endy D. Measuring the activity of BioBrick promoters using an in vivo reference standard. Journal of Biological Engineering. 3: 4. PMID 19298678 DOI: 10.1186/1754-1611-3-4  0.321
2008 Canton B, Labno A, Endy D. Refinement and standardization of synthetic biological parts and devices. Nature Biotechnology. 26: 787-93. PMID 18612302 DOI: 10.1038/Nbt1413  0.343
2008 Shetty RP, Endy D, Knight TF. Engineering BioBrick vectors from BioBrick parts. Journal of Biological Engineering. 2: 5. PMID 18410688 DOI: 10.1186/1754-1611-2-5  0.344
2008 Endy D. Genomics. Reconstruction of the genomes. Science (New York, N.Y.). 319: 1196-7. PMID 18309068 DOI: 10.1126/Science.1155749  0.315
2008 Endy D. Synthetic biology: Can we make biology easy to engineer? Industrial Biotechnology. 4: 340-351. DOI: 10.1089/Ind.2008.4.340  0.338
2007 Kosuri S, Kelly JR, Endy D. TABASCO: A single molecule, base-pair resolved gene expression simulator. Bmc Bioinformatics. 8: 480. PMID 18093293 DOI: 10.1186/1471-2105-8-480  0.676
2007 Bügl H, Danner JP, Molinari RJ, Mulligan JT, Park HO, Reichert B, Roth DA, Wagner R, Budowle B, Scripp RM, Smith JA, Steele SJ, Church G, Endy D. DNA synthesis and biological security. Nature Biotechnology. 25: 627-9. PMID 17557094 DOI: 10.1038/Nbt0607-627  0.409
2006 Baker D, Church G, Collins J, Endy D, Jacobson J, Keasling J, Modrich P, Smolke C, Weiss R. Engineering life: Building a FAB for biology Scientific American. 294: 44-51. PMID 16711359 DOI: 10.1038/Scientificamerican0606-44  0.448
2005 Chan LY, Kosuri S, Endy D. Refactoring bacteriophage T7. Molecular Systems Biology. 1: 2005.0018. PMID 16729053 DOI: 10.1038/Msb4100025  0.69
2005 Endy D. Foundations for engineering biology. Nature. 438: 449-53. PMID 16306983 DOI: 10.1038/Nature04342  0.338
2001 Endy D, Brent R. Modelling cellular behaviour. Nature. 409: 391-395. PMID 11201753 DOI: 10.1038/35053181  0.307
2000 Endy D, You L, Yin J, Molineux IJ. Computation, prediction, and experimental tests of fitness for bacteriophage T7 mutants with permuted genomes Proceedings of the National Academy of Sciences of the United States of America. 97: 5375-5380. PMID 10792041 DOI: 10.1073/Pnas.090101397  0.684
2000 Endy D, Yin J. Toward Antiviral Strategies That Resist Viral Escape Antimicrobial Agents and Chemotherapy. 44: 1097-1099. PMID 10722522 DOI: 10.1128/Aac.44.4.1097-1099.2000  0.595
1997 Endy D, Kong D, Yin J. Intracellular kinetics of a growing virus: a genetically structured simulation for bacteriophage T7. Biotechnology and Bioengineering. 55: 375-389. PMID 18636496 DOI: 10.1002/(Sici)1097-0290(19970720)55:2<375::Aid-Bit15>3.0.Co;2-G  0.66
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