Meera J Patel - Related publications

2015-2019 Neurobiology University of Chicago, Chicago, IL 
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50 most relevant papers in past 60 days:
Year Citation  Score
2021 Bednar RM, Jana S, Kuppa S, Franklin R, Beckman J, Antony E, Cooley RB, Mehl RA. Genetic Incorporation of Two Mutually Orthogonal Bioorthogonal Amino Acids That Enable Efficient Protein Dual-Labeling in Cells. Acs Chemical Biology. PMID 34590824 DOI: 10.1021/acschembio.1c00649   
2021 Aissaoui N, Lai-Kee-Him J, Mills A, Declerck N, Morichaud Z, Brodolin K, Baconnais S, Le Cam E, Charbonnier JB, Sounier R, Granier S, Ropars V, Bron P, Bellot G. Modular Imaging Scaffold for Single-Particle Electron Microscopy. Acs Nano. 15: 4186-4196. PMID 33586425 DOI: 10.1021/acsnano.0c05113   
2021 Liao J, Madahar V, Dang R, Jiang L. Quantitative FRET (qFRET) Technology for the Determination of Protein-Protein Interaction Affinity in Solution. Molecules (Basel, Switzerland). 26. PMID 34770748 DOI: 10.3390/molecules26216339   
2021 Johnson CN, Libich DS. Paramagnetic Relaxation Enhancement for Detecting and Characterizing Self-Associations of Intrinsically Disordered Proteins. Journal of Visualized Experiments : Jove. PMID 34633390 DOI: 10.3791/63057   
2021 Sharma A, Kumar G, Sharma S, Walia K, Chouhan P, Mandal B, Tuli A. Methods for binding analysis of small GTP-binding proteins with their effectors. Methods in Cell Biology. 166: 235-250. PMID 34752335 DOI: 10.1016/bs.mcb.2021.06.003   
2021 Ryan A, Hammond GRV, Deiters A. Optical Control of Phosphoinositide Binding: Rapid Activation of Subcellular Protein Translocation and Cell Signaling. Acs Synthetic Biology. 10: 2886-2895. PMID 34748306 DOI: 10.1021/acssynbio.1c00328   
2021 Kamimura R, Uchida D, Kanno SI, Shiraishi R, Hyodo T, Sawatani Y, Shimura M, Hasegawa T, Tsubura-Okubo M, Yaguchi E, Komiyama Y, Fukumoto C, Izumi S, Fujita A, Wakui T, et al. Identification of Binding Proteins for TSC22D1 Family Proteins Using Mass Spectrometry. International Journal of Molecular Sciences. 22. PMID 34681573 DOI: 10.3390/ijms222010913   
2021 Khan YA, White KI, Brunger AT. The AAA+ superfamily: a review of the structural and mechanistic principles of these molecular machines. Critical Reviews in Biochemistry and Molecular Biology. 1-32. PMID 34632886 DOI: 10.1080/10409238.2021.1979460   
2021 Liu Y, Tian F, Shi S, Deng Y, Zheng P. Enzymatic Protein-Protein Conjugation through Internal Site Verified at the Single-Molecule Level. The Journal of Physical Chemistry Letters. 10914-10919. PMID 34734720 DOI: 10.1021/acs.jpclett.1c02767   
2021 Shams A, Higgins SA, Fellmann C, Laughlin TG, Oakes BL, Lew R, Kim S, Lukarska M, Arnold M, Staahl BT, Doudna JA, Savage DF. Comprehensive deletion landscape of CRISPR-Cas9 identifies minimal RNA-guided DNA-binding modules. Nature Communications. 12: 5664. PMID 34580310 DOI: 10.1038/s41467-021-25992-8   
2021 Liu FJ, Shen SK, Chen YW, Dong XP, Han JR, Xie HJ, Ding ZW. Quantitative proteomics reveals the relationship between protein changes and off-flavor in Russian sturgeon (Acipenser gueldenstaedti) fillets treated with low temperature vacuum heating. Food Chemistry. 370: 131371. PMID 34656021 DOI: 10.1016/j.foodchem.2021.131371   
2021 Dudley QM, Cai YM, Kallam K, Debreyne H, Carrasco Lopez JA, Patron NJ. Biofoundry-assisted expression and characterization of plant proteins. Synthetic Biology (Oxford, England). 6: ysab029. PMID 34693026 DOI: 10.1093/synbio/ysab029   
2021 Nan K, He M, Chen B, Hu B. Analysis of arsenic binding proteins in HepG2 cells based on a biotinylated phenylarsenite probe. Analytica Chimica Acta. 1183: 339007. PMID 34627505 DOI: 10.1016/j.aca.2021.339007   
2021 Parada C, Neri-Badillo IC, Vallecillo AJ, Segura E, Silva-Miranda M, Guzmán-Gutiérrez SL, Ortega PA, Coronado-Aceves EW, Cancino-Villeda L, Torres-Larios A, Aceves Sánchez MJ, Flores Valdez MA, Espitia C. New Insights into the Methylation of Heparin Binding Hemagglutinin Adhesin Expressed in . Pathogens (Basel, Switzerland). 10. PMID 34578171 DOI: 10.3390/pathogens10091139   
2021 He F, Li J, Wang R, Zhao X, Han Y. An Ensemble Deep Learning based Predictor for Simultaneously Identifying Protein Ubiquitylation and SUMOylation Sites. Bmc Bioinformatics. 22: 519. PMID 34689734 DOI: 10.1186/s12859-021-04445-5   
2021 Wu WH, Bai X, Shao Y, Yang C, Wei J, Wei W, Zhang WB. Higher Order Protein Catenation Leads to an Artificial Antibody with Enhanced Affinity and In Vivo Stability. Journal of the American Chemical Society. PMID 34664942 DOI: 10.1021/jacs.1c06169   
2021 Varasteh Moradi S, Johnston WA, Parker J, Alexandrov K. Leishmania tarentolae cell-free based approach for rapid anitbody-antigen interaction analysis. Methods in Enzymology. 659: 391-409. PMID 34752297 DOI: 10.1016/bs.mie.2021.06.017   
2021 García-García A, Hicks T, El Qaidi S, Zhu C, Hardwidge PR, Angulo J, Hurtado-Guerrero R. NleB/SseK-catalyzed arginine-glycosylation and enteropathogen virulence are finely tuned by a single variable position contiguous to the catalytic machinery. Chemical Science. 12: 12181-12191. PMID 34667584 DOI: 10.1039/d1sc04065k   
2021 Miao Y, Shi W, Wang H, Xue Z, You H, Zhang F, Du G, Tang D, Li Y, Shen Y, Cheng Z. Replication protein A large subunit (RPA1a) limits chiasma formation during rice meiosis. Plant Physiology. PMID 34618076 DOI: 10.1093/plphys/kiab365   
2021 Mehta YR, Lewis SA, Leo KT, Chen L, Park E, Raghuram V, Chou CL, Yang CR, Kikuchi H, Khundmiri S, Poll B, Knepper MA. "ADPKD-omics":Determinants of Cyclic AMP Levels in Renal Epithelial Cells. Kidney International. PMID 34757121 DOI: 10.1016/j.kint.2021.10.014   
2021 Sarıkaya S, Dickinson DJ. Rapid extraction and kinetic analysis of protein complexes from single cells. Biophysical Journal. 120: 5018-5031. PMID 34653388 DOI: 10.1016/j.bpj.2021.10.011   
2021 Xing E, Surendranathan N, Kong X, Cyberski N, Garcia JD, Cheng X, Sharma A, Li PK, Larue RC. Development of Murine Leukemia Virus Integrase-Derived Peptides That Bind Brd4 Extra-Terminal Domain as Candidates for Suppression of Acute Myeloid Leukemia. Acs Pharmacology & Translational Science. 4: 1628-1638. PMID 34661079 DOI: 10.1021/acsptsci.1c00159   
2021 Shi XX, Wang ZZ, Wang YL, Huang GY, Yang JF, Wang F, Hao GF, Yang GF. PTMdyna: exploring the influence of post-translation modifications on protein conformational dynamics. Briefings in Bioinformatics. PMID 34643234 DOI: 10.1093/bib/bbab424   
2021 Pathanraj D, Choowongkomon K, Roytrakul S, Yokthongwattana C. Structural Distinctive 26SK, a Ribosome-Inactivating Protein from Jatropha curcas and Its Biological Activities. Applied Biochemistry and Biotechnology. PMID 34669111 DOI: 10.1007/s12010-021-03714-6   
2021 Aneskievich BJ, Shamilov R, Vinogradova O. Intrinsic disorder in integral membrane proteins. Progress in Molecular Biology and Translational Science. 183: 101-134. PMID 34656327 DOI: 10.1016/bs.pmbts.2021.06.002   
2021 Wang L, Huang X, Li K, Song S, Jing Y, Lu S. Screening and Identification of Candidate GUN1-Interacting Proteins in . International Journal of Molecular Sciences. 22. PMID 34768794 DOI: 10.3390/ijms222111364   
2021 Courtney TM, Darrah KE, Horst TJ, Tsang M, Deiters A. Blue Light Activated Rapamycin for Optical Control of Protein Dimerization in Cells and Zebrafish Embryos. Acs Chemical Biology. PMID 34609839 DOI: 10.1021/acschembio.1c00547   
2021 Gomes LR, Durans AM, Napoleão-Pêgo P, Waterman JA, Freitas MS, De Sá NBR, Pereira LV, Furtado JS, Aquino RG, Machado MCR, Fintelman-Rodrigues N, Souza TML, Morel CM, Provance DW, De-Simone SG. Multiepitope Proteins for the Differential Detection of IgG Antibodies against RBD of the Spike Protein and Non-RBD Regions of SARS-CoV-2. Vaccines. 9. PMID 34579223 DOI: 10.3390/vaccines9090986   
2021 Li J, Cai Z, Vaites LP, Shen N, Mitchell DC, Huttlin EL, Paulo JA, Harry BL, Gygi SP. Proteome-wide mapping of short-lived proteins in human cells. Molecular Cell. PMID 34626566 DOI: 10.1016/j.molcel.2021.09.015   
2021 Chatterjee O, Gopalakrishnan L, Mol P, Advani J, Nair B, Shankar SK, Mahadevan A, Prasad TSK. The Normal Human Adult Hypothalamus Proteomic Landscape: Rise of Neuroproteomics in Biological Psychiatry and Systems Biology. Omics : a Journal of Integrative Biology. 25: 693-710. PMID 34714154 DOI: 10.1089/omi.2021.0158   
2021 Duysak T, Afzal AR, Jung CH. Determination of glutathione-binding to proteins by fluorescence spectroscopy. Biochemical and Biophysical Research Communications. 557: 329-333. PMID 33895474 DOI: 10.1016/j.bbrc.2021.04.016   
2021 Teraz-Orosz A, Gierula M, Petri A, Jones DA, Keniyopoullos R, Badia Folgado P, Santamaria S, Crawley JTB, Lane DA, Ahnstrom J. Laminin G1 residues of protein S mediate its TFPI cofactor function and are competitively regulated by C4BP. Blood Advances. PMID 34731882 DOI: 10.1182/bloodadvances.2021005382   
2021 Yang J, Kim N, Park W, Chun J, Kim S, Shin J, Park YC, Han K, Kim SK, Kweon DH. Optimization of protein trans-splicing in an inducible plasmid display system for high-throughput screening and selection of soluble proteins. Enzyme and Microbial Technology. 153: 109914. PMID 34670187 DOI: 10.1016/j.enzmictec.2021.109914   
2021 Kastano K, Mier P, Andrade-Navarro MA. The Role of Low Complexity Regions in Protein Interaction Modes: An Illustration in Huntingtin. International Journal of Molecular Sciences. 22. PMID 33572172 DOI: 10.3390/ijms22041727   
2021 Scott KA, Williams SA, Santangelo TJ. Thermococcus kodakarensis provides a versatile hyperthermophilic archaeal platform for protein expression. Methods in Enzymology. 659: 243-273. PMID 34752288 DOI: 10.1016/bs.mie.2021.06.014   
2021 Leissing F, Misch NV, Wang X, Werner L, Huang L, Conrath U, Beckers GJM. Purification of MAP-kinase protein complexes and identification of candidate components by XL-TAP-MS. Plant Physiology. PMID 34609515 DOI: 10.1093/plphys/kiab446   
2021 Bhandari BK, Lim CS, Remus DM, Chen A, van Dolleweerd C, Gardner PP. Analysis of 11,430 recombinant protein production experiments reveals that protein yield is tunable by synonymous codon changes of translation initiation sites. Plos Computational Biology. 17: e1009461. PMID 34610008 DOI: 10.1371/journal.pcbi.1009461   
2021 Hu X, Feng C, Zhou Y, Harrison A, Chen M. DeepTrio: a ternary prediction system for protein-protein interaction using mask multiple parallel convolutional neural networks. Bioinformatics (Oxford, England). PMID 34694333 DOI: 10.1093/bioinformatics/btab737   
2021 Duncan ED, Lencer E, Linklater E, Prekeris R. Methods to Study the Unique SOCS Box Domain of the Rab40 Small GTPase Subfamily. Methods in Molecular Biology (Clifton, N.J.). 2293: 163-179. PMID 34453716 DOI: 10.1007/978-1-0716-1346-7_11   
2021 Zhu X, Feng C, Zhou L, Li Z, Zhang Y, Pan J. Impacts of Ser/Thr Protein Kinase Stk1 on the Proteome, Twitching Motility, and Competitive Advantage in . Frontiers in Microbiology. 12: 738690. PMID 34733256 DOI: 10.3389/fmicb.2021.738690   
2021 Zhang W, Tan X, Lin S, Gou Y, Han C, Zhang C, Ning W, Wang C, Xue Y. CPLM 4.0: an updated database with rich annotations for protein lysine modifications. Nucleic Acids Research. PMID 34581824 DOI: 10.1093/nar/gkab849   
2021 Gupta R, Sahu M, Srivastava D, Tiwari S, Ambasta RK, Kumar P.. Post-translational modifications: Regulators of neurodegenerative proteinopathies. Ageing Res Rev.. 68: 101336. PMID 33775891 DOI: doi: 10.1016/j.arr.2021.101336   
2021 Cao L, Wang L. New covalent bonding ability for proteins. Protein Science : a Publication of the Protein Society. PMID 34761448 DOI: 10.1002/pro.4228   
2021 Wang X, Li F, Qiu W, Xu B, Li Y, Lian X, Yu H, Zhang Z, Wang J, Li Z, Xue W, Zhu F. SYNBIP: synthetic binding proteins for research, diagnosis and therapy. Nucleic Acids Research. PMID 34664670 DOI: 10.1093/nar/gkab926   
2021 Biagioni F, Mastroiacovo F, Lenzi P, Puglisi-Allegra S, Busceti CL, Ryskalin L, Ferese R, Bucci D, Frati A, Nicoletti F, Fornai F. The Autophagy-Related Organelle Autophagoproteasome Is Suppressed within Ischemic Penumbra. International Journal of Molecular Sciences. 22. PMID 34638703 DOI: 10.3390/ijms221910364   
2021 Mak WS, Tsang TM, Chan TY, Lukov GL. Novel Binding Partners for CCT and PhLP1 Suggest a Common Folding Mechanism for WD40 Proteins with a 7-Bladed Beta-Propeller Structure. Proteomes. 9. PMID 34698247 DOI: 10.3390/proteomes9040040   
2021 Azizi M, Tasharofi S, Koolivand A, Oloumi A, Rion H, Khaledi MG. Improving identification of low abundance and hydrophobic proteins using fluoroalcohol mediated supramolecular biphasic systems with quaternary ammonium salts. Journal of Chromatography. A. 1655: 462483. PMID 34492580 DOI: 10.1016/j.chroma.2021.462483   
2021 Anghel N, Müller J, Serricchio M, Jelk J, Bütikofer P, Boubaker G, Imhof D, Ramseier J, Desiatkina O, Păunescu E, Braga-Lagache S, Heller M, Furrer J, Hemphill A. Cellular and Molecular Targets of Nucleotide-Tagged Trithiolato-Bridged Arene Ruthenium Complexes in the Protozoan Parasites and . International Journal of Molecular Sciences. 22. PMID 34639127 DOI: 10.3390/ijms221910787   
2021 Li Y, Zhou Y, Wang T, Long K, Zhang Y, Wang W. Photoenhanced cytosolic protein delivery based on a photocleavable group-modified dendrimer. Nanoscale. PMID 34668505 DOI: 10.1039/d1nr04430c   
2021 Liu B, Stone OJ, Pablo M, Herron JC, Nogueira AT, Dagliyan O, Grimm JB, Lavis LD, Elston TC, Hahn KM. Biosensors based on peptide exposure show single molecule conformations in live cells. Cell. PMID 34637702 DOI: 10.1016/j.cell.2021.09.026