| Year |
Citation |
Score |
| 2022 |
Kazamia E, Mach J, McQuaid JB, Gao X, Coale TH, Malych R, Camadro JM, Lesuisse E, Allen AE, Bowler C, Sutak R. In vivo localization of iron starvation induced proteins under variable iron supplementation regimes in . Plant Direct. 6: e472. PMID 36582220 DOI: 10.1002/pld3.472 |
0.468 |
|
| 2021 |
Oliver A, Podell S, Pinowska A, Traller JC, Smith SR, McClure R, Beliaev A, Bohutskyi P, Hill EA, Rabines A, Zheng H, Allen LZ, Kuo A, Grigoriev IV, Allen AE, et al. Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom. Scientific Reports. 11: 15592. PMID 34341414 DOI: 10.1038/s41598-021-95106-3 |
0.597 |
|
| 2020 |
Tan MH, Smith SR, Hixson KK, Tan J, McCarthy JK, Kustka AB, Allen AE. The Importance of Protein Phosphorylation for Signaling and Metabolism in Response to Diel Light Cycling and Nutrient Availability in a Marine Diatom. Biology. 9. PMID 32640597 DOI: 10.3390/Biology9070155 |
0.562 |
|
| 2020 |
Schulhof MA, Allen AE, Allen EE, Mladenov N, McCrow JP, Jones NT, Blanton J, Cavalheri HB, Kaul D, Symons CC, Shurin JB. Sierra Nevada mountain lake microbial communities are structured by temperature, resources and geographic location. Molecular Ecology. PMID 32578266 DOI: 10.1111/Mec.15469 |
0.313 |
|
| 2020 |
Jallet D, Xing D, Hughes A, Moosburner M, Simmons MP, Allen AE, Peers G. Mitochondrial fatty acid β-oxidation is required for storage lipid catabolism in a marine diatom. The New Phytologist. PMID 32535932 DOI: 10.1111/Nph.16744 |
0.327 |
|
| 2020 |
Wang H, Guo R, Lim WA, Allen AE, Ki JS. Comparative transcriptomics of toxin synthesis genes between the non-toxin producing dinoflagellate Cochlodinium polykrikoides and toxigenic Alexandrium pacificum. Harmful Algae. 93: 101777. PMID 32307068 DOI: 10.1016/J.Hal.2020.101777 |
0.354 |
|
| 2020 |
Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, et al. Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32296171 DOI: 10.1038/S41592-020-0828-6 |
0.511 |
|
| 2020 |
Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, et al. Genetic tool development in marine protists: emerging model organisms for experimental cell biology. Nature Methods. PMID 32251396 DOI: 10.1038/S41592-020-0796-X |
0.555 |
|
| 2020 |
Moosburner MA, Gholami P, McCarthy JK, Tan M, Bielinski VA, Allen AE. Multiplexed Knockouts in the Model Diatom by Episomal Delivery of a Selectable Cas9. Frontiers in Microbiology. 11: 5. PMID 32047486 DOI: 10.3389/Fmicb.2020.00005 |
0.333 |
|
| 2019 |
Coale TH, Moosburner M, Horák A, Oborník M, Barbeau KA, Allen AE. Reduction-dependent siderophore assimilation in a model pennate diatom. Proceedings of the National Academy of Sciences of the United States of America. PMID 31685631 DOI: 10.1073/Pnas.1907234116 |
0.349 |
|
| 2019 |
Smith SR, Dupont CL, McCarthy JK, Broddrick JT, Oborník M, Horák A, Füssy Z, Cihlář J, Kleessen S, Zheng H, McCrow JP, Hixson KK, Araújo WL, Nunes-Nesi A, Fernie A, ... ... Allen AE, et al. Evolution and regulation of nitrogen flux through compartmentalized metabolic networks in a marine diatom. Nature Communications. 10: 4552. PMID 31591397 DOI: 10.1038/S41467-019-12407-Y |
0.626 |
|
| 2019 |
Wu M, McCain JSP, Rowland E, Middag R, Sandgren M, Allen AE, Bertrand EM. Manganese and iron deficiency in Southern Ocean Phaeocystis antarctica populations revealed through taxon-specific protein indicators. Nature Communications. 10: 3582. PMID 31395884 DOI: 10.1038/S41467-019-11426-Z |
0.34 |
|
| 2019 |
Kolody BC, McCrow JP, Allen LZ, Aylward FO, Fontanez KM, Moustafa A, Moniruzzaman M, Chavez FP, Scholin CA, Allen EE, Worden AZ, Delong EF, Allen AE. Diel transcriptional response of a California Current plankton microbiome to light, low iron, and enduring viral infection. The Isme Journal. PMID 31320727 DOI: 10.1038/S41396-019-0472-2 |
0.371 |
|
| 2019 |
Broddrick JT, Du N, Smith SR, Tsuji Y, Jallet D, Ware MA, Peers G, Matsuda Y, Dupont CL, Mitchell BG, Palsson BO, Allen AE. Cross-compartment metabolic coupling enables flexible photoprotective mechanisms in the diatom Phaeodactylum tricornutum. The New Phytologist. PMID 30636322 DOI: 10.1111/Nph.15685 |
0.587 |
|
| 2018 |
Hogle SL, Dupont CL, Hopkinson BM, King AL, Buck KN, Roe KL, Stuart RK, Allen AE, Mann EL, Johnson ZI, Barbeau KA. Pervasive iron limitation at subsurface chlorophyll maxima of the California Current. Proceedings of the National Academy of Sciences of the United States of America. PMID 30530699 DOI: 10.1073/Pnas.1813192115 |
0.33 |
|
| 2018 |
Brunson JK, McKinnie SMK, Chekan JR, McCrow JP, Miles ZD, Bertrand EM, Bielinski VA, Luhavaya H, Oborník M, Smith GJ, Hutchins DA, Allen AE, Moore BS. Biosynthesis of the neurotoxin domoic acid in a bloom-forming diatom. Science (New York, N.Y.). 361: 1356-1358. PMID 30262498 DOI: 10.1126/Science.Aau0382 |
0.356 |
|
| 2018 |
Murik O, Tirichine L, Prihoda J, Thomas Y, Araújo WL, Allen AE, Fernie AR, Bowler C. Downregulation of mitochondrial alternative oxidase affects chloroplast function, redox status and stress response in a marine diatom. The New Phytologist. PMID 30216452 DOI: 10.1111/Nph.15479 |
0.564 |
|
| 2018 |
Rastogi A, Maheswari U, Dorrell RG, Vieira FRJ, Maumus F, Kustka A, McCarthy J, Allen AE, Kersey P, Bowler C, Tirichine L. Integrative analysis of large scale transcriptome data draws a comprehensive landscape of Phaeodactylum tricornutum genome and evolutionary origin of diatoms. Scientific Reports. 8: 4834. PMID 29556065 DOI: 10.1038/S41598-018-23106-X |
0.639 |
|
| 2018 |
McQuaid JB, Kustka AB, Oborník M, Horák A, McCrow JP, Karas BJ, Zheng H, Kindeberg T, Andersson AJ, Barbeau KA, Allen AE. Carbonate-sensitive phytotransferrin controls high-affinity iron uptake in diatoms. Nature. PMID 29539640 DOI: 10.1038/Nature25982 |
0.348 |
|
| 2018 |
Bender SJ, Moran DM, McIlvin MR, Zheng H, McCrow JP, Badger J, DiTullio GR, Allen AE, Saito MA. Iron triggers colony formation in Phaeocystis antarctica : connecting molecular mechanisms with iron biogeochemistry Biogeosciences Discussions. 1-52. DOI: 10.5194/Bg-2017-558 |
0.353 |
|
| 2018 |
Bender SJ, Moran DM, McIlvin MR, Zheng H, McCrow JP, Badger J, DiTullio GR, Allen AE, Saito MA. Colony formation in <i>Phaeocystis antarctica</i>: connecting molecular mechanisms with iron biogeochemistry Biogeosciences. 15: 4923-4942. DOI: 10.5194/Bg-15-4923-2018 |
0.356 |
|
| 2018 |
Berg C, Dupont CL, Asplund-Samuelsson J, Celepli NA, Eiler A, Allen AE, Ekman M, Bergman B, Ininbergs K. Dissection of Microbial Community Functions during a Cyanobacterial Bloom in the Baltic Sea via Metatranscriptomics Frontiers in Marine Science. 5. DOI: 10.3389/Fmars.2018.00055 |
0.383 |
|
| 2018 |
Spackeen J, Sipler R, Bertrand E, Xu K, McQuaid J, Walworth N, Hutchins D, Allen A, Bronk D. Impact of temperature, CO2, and iron on nutrient uptake by a late-season microbial community from the Ross Sea, Antarctica Aquatic Microbial Ecology. 82: 145-159. DOI: 10.3354/Ame01886 |
0.31 |
|
| 2018 |
Spackeen JL, Bronk DA, Sipler RE, Bertrand EM, Hutchins DA, Allen AE. Stoichiometric N:P Ratios, Temperature, and Iron Impact Carbon and Nitrogen Uptake by Ross Sea Microbial Communities Journal of Geophysical Research: Biogeosciences. 123: 2955-2975. DOI: 10.1029/2017Jg004316 |
0.315 |
|
| 2017 |
Hippmann AA, Schuback N, Moon KM, McCrow JP, Allen AE, Foster LJ, Green BR, Maldonado MT. Contrasting effects of copper limitation on the photosynthetic apparatus in two strains of the open ocean diatom Thalassiosira oceanica. Plos One. 12: e0181753. PMID 28837661 DOI: 10.1371/Journal.Pone.0181753 |
0.301 |
|
| 2017 |
McCarthy JK, Smith SR, McCrow JP, Tan M, Zheng H, Beeri K, Roth RA, Lichtle C, Goodenough U, Bowler C, Dupont CL, Allen AE. Nitrate Reductase Knockout Uncouples Nitrate Transport from Nitrate Assimilation and Drives Repartitioning of Carbon Flux in a Model Pennate Diatom. The Plant Cell. PMID 28765511 DOI: 10.1105/Tpc.16.00910 |
0.682 |
|
| 2017 |
Diner RE, Noddings CM, Lian NC, Kang AK, McQuaid JB, Jablanovic J, Espinoza JL, Nguyen NA, Anzelmatti MA, Jansson J, Bielinski VA, Karas BJ, Dupont CL, Allen AE, Weyman PD. Diatom centromeres suggest a mechanism for nuclear DNA acquisition. Proceedings of the National Academy of Sciences of the United States of America. PMID 28673987 DOI: 10.1073/Pnas.1700764114 |
0.355 |
|
| 2017 |
Lee ZM, Poret-Peterson AT, Siefert JL, Kaul D, Moustafa A, Allen AE, Dupont CL, Eguiarte LE, Souza V, Elser JJ. Nutrient Stoichiometry Shapes Microbial Community Structure in an Evaporitic Shallow Pond. Frontiers in Microbiology. 8: 949. PMID 28611750 DOI: 10.3389/Fmicb.2017.00949 |
0.337 |
|
| 2017 |
Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. Correction: Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. Plos Genetics. 13: e1006688. PMID 28355217 DOI: 10.1371/journal.pgen.1006688 |
0.497 |
|
| 2017 |
Mock T, Otillar RP, Strauss J, McMullan M, Paajanen P, Schmutz J, Salamov A, Sanges R, Toseland A, Ward BJ, Allen AE, Dupont CL, Frickenhaus S, Maumus F, Veluchamy A, et al. Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus. Nature. 1-5. PMID 28092920 DOI: 10.1038/Nature20803 |
0.61 |
|
| 2016 |
Smith SR, Gillard JT, Kustka AB, McCrow JP, Badger JH, Zheng H, New AM, Dupont CL, Obata T, Fernie AR, Allen AE. Transcriptional Orchestration of the Global Cellular Response of a Model Pennate Diatom to Diel Light Cycling under Iron Limitation. Plos Genetics. 12: e1006490. PMID 27973599 DOI: 10.1371/Journal.Pgen.1006490 |
0.588 |
|
| 2016 |
Traller JC, Cokus SJ, Lopez DA, Gaidarenko O, Smith SR, McCrow JP, Gallaher SD, Podell S, Thompson M, Cook O, Morselli M, Jaroszewicz A, Allen EE, Allen AE, Merchant SS, et al. Genome and methylome of the oleaginous diatom Cyclotella cryptica reveal genetic flexibility toward a high lipid phenotype. Biotechnology For Biofuels. 9: 258. PMID 27933100 DOI: 10.1186/S13068-016-0670-3 |
0.691 |
|
| 2016 |
Caron DA, Alexander H, Allen AE, Archibald JM, Armbrust EV, Bachy C, Bell CJ, Bharti A, Dyhrman ST, Guida SM, Heidelberg KB, Kaye JZ, Metzner J, Smith SR, Worden AZ. Probing the evolution, ecology and physiology of marine protists using transcriptomics. Nature Reviews. Microbiology. PMID 27867198 DOI: 10.1038/Nrmicro.2016.160 |
0.637 |
|
| 2016 |
Zielinski BL, Allen AE, Carpenter EJ, Coles VJ, Crump BC, Doherty M, Foster RA, Goes JI, Gomes HR, Hood RR, McCrow JP, Montoya JP, Moustafa A, Satinsky BM, Sharma S, et al. Patterns of Transcript Abundance of Eukaryotic Biogeochemically-Relevant Genes in the Amazon River Plume. Plos One. 11: e0160929. PMID 27598790 DOI: 10.1371/Journal.Pone.0160929 |
0.437 |
|
| 2016 |
Diner RE, Bielinski VA, Dupont CL, Allen AE, Weyman PD. Refinement of the Diatom Episome Maintenance Sequence and Improvement of Conjugation-Based DNA Delivery Methods. Frontiers in Bioengineering and Biotechnology. 4: 65. PMID 27551676 DOI: 10.3389/Fbioe.2016.00065 |
0.354 |
|
| 2016 |
Asplund-Samuelsson J, Sundh J, Dupont CL, Allen AE, McCrow JP, Celepli NA, Bergman B, Ininbergs K, Ekman M. Diversity and Expression of Bacterial Metacaspases in an Aquatic Ecosystem. Frontiers in Microbiology. 7: 1043. PMID 27458440 DOI: 10.3389/Fmicb.2016.01043 |
0.444 |
|
| 2016 |
Diner RE, Schwenck SM, McCrow JP, Zheng H, Allen AE. Genetic Manipulation of Competition for Nitrate between Heterotrophic Bacteria and Diatoms. Frontiers in Microbiology. 7: 880. PMID 27375600 DOI: 10.3389/Fmicb.2016.00880 |
0.359 |
|
| 2016 |
Díez B, Nylander JA, Ininbergs K, Dupont CL, Allen AE, Yooseph S, Rusch DB, Bergman B. Metagenomic Analysis of the Indian Ocean Picocyanobacterial Community: Structure, Potential Function and Evolution. Plos One. 11: e0155757. PMID 27196065 DOI: 10.1371/Journal.Pone.0155757 |
0.404 |
|
| 2016 |
Levering J, Broddrick J, Dupont CL, Peers G, Beeri K, Mayers J, Gallina AA, Allen AE, Palsson BO, Zengler K. Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom. Plos One. 11: e0155038. PMID 27152931 DOI: 10.1371/Journal.Pone.0155038 |
0.441 |
|
| 2016 |
Smith SR, Glé C, Abbriano RM, Traller JC, Davis A, Trentacoste E, Vernet M, Allen AE, Hildebrand M. Transcript level coordination of carbon pathways during silicon starvation-induced lipid accumulation in the diatom Thalassiosira pseudonana. The New Phytologist. PMID 26844818 DOI: 10.1111/Nph.13843 |
0.712 |
|
| 2016 |
Kharbush JJ, Allen AE, Moustafa A, Dorrestein PC, Aluwihare LI. Intact polar diacylglycerol biomarker lipids isolated from suspended particulate organic matter accumulating in an ultraoligotrophic water column Organic Geochemistry. 100: 29-41. DOI: 10.1016/J.Orggeochem.2016.07.008 |
0.332 |
|
| 2015 |
Bertrand EM, McCrow JP, Moustafa A, Zheng H, McQuaid JB, Delmont TO, Post AF, Sipler RE, Spackeen JL, Xu K, Bronk DA, Hutchins DA, Allen AE. Phytoplankton-bacterial interactions mediate micronutrient colimitation at the coastal Antarctic sea ice edge. Proceedings of the National Academy of Sciences of the United States of America. PMID 26221022 DOI: 10.1073/Pnas.1501615112 |
0.405 |
|
| 2015 |
Veluchamy A, Rastogi A, Lin X, Lombard B, Murik O, Thomas Y, Dingli F, Rivarola M, Ott S, Liu X, Sun Y, Rabinowicz PD, McCarthy J, Allen AE, Loew D, et al. An integrative analysis of post-translational histone modifications in the marine diatom Phaeodactylum tricornutum. Genome Biology. 16: 102. PMID 25990474 DOI: 10.1186/S13059-015-0671-8 |
0.568 |
|
| 2015 |
Karas BJ, Diner RE, Lefebvre SC, McQuaid J, Phillips AP, Noddings CM, Brunson JK, Valas RE, Deerinck TJ, Jablanovic J, Gillard JT, Beeri K, Ellisman MH, Glass JI, Hutchison CA, ... ... Allen AE, et al. Designer diatom episomes delivered by bacterial conjugation. Nature Communications. 6: 6925. PMID 25897682 DOI: 10.1038/Ncomms7925 |
0.39 |
|
| 2015 |
Morrissey J, Sutak R, Paz-Yepes J, Tanaka A, Moustafa A, Veluchamy A, Thomas Y, Botebol H, Bouget FY, McQuaid JB, Tirichine L, Allen AE, Lesuisse E, Bowler C. A novel protein, ubiquitous in marine phytoplankton, concentrates iron at the cell surface and facilitates uptake. Current Biology : Cb. 25: 364-71. PMID 25557662 DOI: 10.1016/J.Cub.2014.12.004 |
0.544 |
|
| 2015 |
Dupont CL, McCrow JP, Valas R, Moustafa A, Walworth N, Goodenough U, Roth R, Hogle SL, Bai J, Johnson ZI, Mann E, Palenik B, Barbeau KA, Venter JC, Allen AE. Genomes and gene expression across light and productivity gradients in eastern subtropical Pacific microbial communities. The Isme Journal. 9: 1076-92. PMID 25333462 DOI: 10.1038/Ismej.2014.198 |
0.407 |
|
| 2015 |
Weyman PD, Beeri K, Lefebvre SC, Rivera J, McCarthy JK, Heuberger AL, Peers G, Allen AE, Dupont CL. Inactivation of Phaeodactylum tricornutum urease gene using transcription activator-like effector nuclease-based targeted mutagenesis. Plant Biotechnology Journal. 13: 460-70. PMID 25302562 DOI: 10.1111/Pbi.12254 |
0.446 |
|
| 2015 |
Zheng H, Lefebvre SC, Smith SR, Hanly TJ, Suzuki Y, Allen AE. Successful diatom transcription factor synthesis and downstream cloning using the bioxpTM 3200 system Biotechniques. 59: 46-47. DOI: 10.2144/000114311 |
0.505 |
|
| 2014 |
Dupont CL, Larsson J, Yooseph S, Ininbergs K, Goll J, Asplund-Samuelsson J, McCrow JP, Celepli N, Allen LZ, Ekman M, Lucas AJ, Hagström Å, Thiagarajan M, Brindefalk B, Richter AR, ... ... Allen AE, et al. Functional tradeoffs underpin salinity-driven divergence in microbial community composition. Plos One. 9: e89549. PMID 24586863 DOI: 10.1371/Journal.Pone.0089549 |
0.382 |
|
| 2014 |
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, ... ... Allen AE, et al. Corrigendum: Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum Nature Communications. 5. DOI: 10.1038/Ncomms4028 |
0.541 |
|
| 2013 |
Allen AE, Allen LZ, McCrow JP. Lineage specific gene family enrichment at the microscale in marine systems. Current Opinion in Microbiology. 16: 605-17. PMID 24377115 DOI: 10.1016/J.Mib.2013.10.001 |
0.418 |
|
| 2013 |
Karas BJ, Molparia B, Jablanovic J, Hermann WJ, Lin YC, Dupont CL, Tagwerker C, Yonemoto IT, Noskov VN, Chuang RY, Allen AE, Glass JI, Hutchison CA, Smith HO, Venter JC, et al. Assembly of eukaryotic algal chromosomes in yeast. Journal of Biological Engineering. 7: 30. PMID 24325901 DOI: 10.1186/1754-1611-7-30 |
0.315 |
|
| 2013 |
Veluchamy A, Lin X, Maumus F, Rivarola M, Bhavsar J, Creasy T, O'Brien K, Sengamalay NA, Tallon LJ, Smith AD, Rayko E, Ahmed I, Le Crom S, Farrant GK, Sgro JY, ... ... Allen AE, ... ... Allen A, et al. Insights into the role of DNA methylation in diatoms by genome-wide profiling in Phaeodactylum tricornutum. Nature Communications. 4: 2091. PMID 23820484 DOI: 10.1038/Ncomms3091 |
0.558 |
|
| 2013 |
McLean JS, Lombardo MJ, Badger JH, Edlund A, Novotny M, Yee-Greenbaum J, Vyahhi N, Hall AP, Yang Y, Dupont CL, Ziegler MG, Chitsaz H, Allen AE, Yooseph S, Tesler G, et al. Candidate phylum TM6 genome recovered from a hospital sink biofilm provides genomic insights into this uncultivated phylum. Proceedings of the National Academy of Sciences of the United States of America. 110: E2390-9. PMID 23754396 DOI: 10.1073/Pnas.1219809110 |
0.439 |
|
| 2013 |
Smith MW, Zeigler Allen L, Allen AE, Herfort L, Simon HM. Contrasting genomic properties of free-living and particle-attached microbial assemblages within a coastal ecosystem. Frontiers in Microbiology. 4: 120. PMID 23750156 DOI: 10.3389/Fmicb.2013.00120 |
0.367 |
|
| 2013 |
Konotchick T, Dupont CL, Valas RE, Badger JH, Allen AE. Transcriptomic analysis of metabolic function in the giant kelp, Macrocystis pyrifera, across depth and season. The New Phytologist. 198: 398-407. PMID 23488966 DOI: 10.1111/Nph.12160 |
0.368 |
|
| 2012 |
Shrestha RP, Tesson B, Norden-Krichmar T, Federowicz S, Hildebrand M, Allen AE. Whole transcriptome analysis of the silicon response of the diatom Thalassiosira pseudonana. Bmc Genomics. 13: 499. PMID 22994549 DOI: 10.1186/1471-2164-13-499 |
0.588 |
|
| 2012 |
Brown MV, Lauro FM, DeMaere MZ, Muir L, Wilkins D, Thomas T, Riddle MJ, Fuhrman JA, Andrews-Pfannkoch C, Hoffman JM, McQuaid JB, Allen A, Rintoul SR, Cavicchioli R. Global biogeography of SAR11 marine bacteria. Molecular Systems Biology. 8: 595. PMID 22806143 DOI: 10.1038/Msb.2012.28 |
0.401 |
|
| 2012 |
Loper JE, Hassan KA, Mavrodi DV, Davis EW, Lim CK, Shaffer BT, Elbourne LD, Stockwell VO, Hartney SL, Breakwell K, Henkels MD, Tetu SG, Rangel LI, Kidarsa TA, Wilson NL, ... ... Allen AE, et al. Comparative genomics of plant-associated Pseudomonas spp.: insights into diversity and inheritance of traits involved in multitrophic interactions. Plos Genetics. 8: e1002784. PMID 22792073 DOI: 10.1371/Journal.Pgen.1002784 |
0.408 |
|
| 2012 |
Bertrand EM, Allen AE, Dupont CL, Norden-Krichmar TM, Bai J, Valas RE, Saito MA. Influence of cobalamin scarcity on diatom molecular physiology and identification of a cobalamin acquisition protein. Proceedings of the National Academy of Sciences of the United States of America. 109: E1762-71. PMID 22652568 DOI: 10.1073/Pnas.1201731109 |
0.404 |
|
| 2012 |
Fernie AR, Obata T, Allen AE, Araújo WL, Bowler C. Leveraging metabolomics for functional investigations in sequenced marine diatoms. Trends in Plant Science. 17: 395-403. PMID 22465020 DOI: 10.1016/J.Tplants.2012.02.005 |
0.623 |
|
| 2012 |
Marchetti A, Schruth DM, Durkin CA, Parker MS, Kodner RB, Berthiaume CT, Morales R, Allen AE, Armbrust EV. Comparative metatranscriptomics identifies molecular bases for the physiological responses of phytoplankton to varying iron availability. Proceedings of the National Academy of Sciences of the United States of America. 109: E317-25. PMID 22308424 DOI: 10.1073/Pnas.1118408109 |
0.362 |
|
| 2012 |
Zeigler Allen L, Allen EE, Badger JH, McCrow JP, Paulsen IT, Elbourne LD, Thiagarajan M, Rusch DB, Nealson KH, Williamson SJ, Venter JC, Allen AE. Influence of nutrients and currents on the genomic composition of microbes across an upwelling mosaic. The Isme Journal. 6: 1403-14. PMID 22278668 DOI: 10.1038/Ismej.2011.201 |
0.442 |
|
| 2012 |
Allen AE, Moustafa A, Montsant A, Eckert A, Kroth PG, Bowler C. Evolution and functional diversification of fructose bisphosphate aldolase genes in photosynthetic marine diatoms. Molecular Biology and Evolution. 29: 367-79. PMID 21903677 DOI: 10.1093/Molbev/Msr223 |
0.595 |
|
| 2012 |
Cock JM, Sterck L, Ahmed S, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Arun A, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, et al. The Ectocarpus Genome and Brown Algal Genomics. The Ectocarpus Genome Consortium. Advances in Botanical Research. 64: 141-184. DOI: 10.1016/B978-0-12-391499-6.00005-0 |
0.618 |
|
| 2011 |
Norden-Krichmar TM, Allen AE, Gaasterland T, Hildebrand M. Characterization of the small RNA transcriptome of the diatom, Thalassiosira pseudonana. Plos One. 6: e22870. PMID 21857960 DOI: 10.1371/Journal.Pone.0022870 |
0.576 |
|
| 2011 |
Worden AZ, Dupont C, Allen AE. Genomes of uncultured eukaryotes: sorting FACS from fiction. Genome Biology. 12: 117. PMID 21722350 DOI: 10.1186/Gb-2011-12-6-117 |
0.415 |
|
| 2011 |
Allen AE, Dupont CL, Oborník M, Horák A, Nunes-Nesi A, McCrow JP, Zheng H, Johnson DA, Hu H, Fernie AR, Bowler C. Evolution and metabolic significance of the urea cycle in photosynthetic diatoms. Nature. 473: 203-7. PMID 21562560 DOI: 10.1038/Nature10074 |
0.617 |
|
| 2011 |
Tachibana M, Allen AE, Kikutani S, Endo Y, Bowler C, Matsuda Y. Localization of putative carbonic anhydrases in two marine diatoms, Phaeodactylum tricornutum and Thalassiosira pseudonana. Photosynthesis Research. 109: 205-21. PMID 21365259 DOI: 10.1007/S11120-011-9634-4 |
0.487 |
|
| 2011 |
Hopkinson BM, Dupont CL, Allen AE, Morel FM. Efficiency of the CO2-concentrating mechanism of diatoms. Proceedings of the National Academy of Sciences of the United States of America. 108: 3830-7. PMID 21321195 DOI: 10.1073/Pnas.1018062108 |
0.308 |
|
| 2010 |
Bowler C, Vardi A, Allen AE. Oceanographic and biogeochemical insights from diatom genomes. Annual Review of Marine Science. 2: 333-65. PMID 21141668 DOI: 10.1146/Annurev-Marine-120308-081051 |
0.65 |
|
| 2010 |
Yooseph S, Nealson KH, Rusch DB, McCrow JP, Dupont CL, Kim M, Johnson J, Montgomery R, Ferriera S, Beeson K, Williamson SJ, Tovchigrechko A, Allen AE, Zeigler LA, Sutton G, et al. Genomic and functional adaptation in surface ocean planktonic prokaryotes. Nature. 468: 60-6. PMID 21048761 DOI: 10.1038/Nature09530 |
0.442 |
|
| 2010 |
Worden AZ, Allen AE. The voyage of the microbial eukaryote. Current Opinion in Microbiology. 13: 652-60. PMID 20832353 DOI: 10.1016/J.Mib.2010.08.001 |
0.482 |
|
| 2010 |
Maheswari U, Jabbari K, Petit JL, Porcel BM, Allen AE, Cadoret JP, De Martino A, Heijde M, Kaas R, La Roche J, Lopez PJ, Martin-Jézéquel V, Meichenin A, Mock T, Schnitzler Parker M, et al. Digital expression profiling of novel diatom transcripts provides insight into their biological functions. Genome Biology. 11: R85. PMID 20738856 DOI: 10.1186/Gb-2010-11-8-R85 |
0.612 |
|
| 2010 |
Cuvelier ML, Allen AE, Monier A, McCrow JP, Messié M, Tringe SG, Woyke T, Welsh RM, Ishoey T, Lee JH, Binder BJ, DuPont CL, Latasa M, Guigand C, Buck KR, et al. Targeted metagenomics and ecology of globally important uncultured eukaryotic phytoplankton. Proceedings of the National Academy of Sciences of the United States of America. 107: 14679-84. PMID 20668244 DOI: 10.1073/Pnas.1001665107 |
0.469 |
|
| 2010 |
Cock JM, Sterck L, Rouzé P, Scornet D, Allen AE, Amoutzias G, Anthouard V, Artiguenave F, Aury JM, Badger JH, Beszteri B, Billiau K, Bonnet E, Bothwell JH, Bowler C, et al. The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature. 465: 617-21. PMID 20520714 DOI: 10.1038/Nature09016 |
0.631 |
|
| 2009 |
Maumus F, Allen AE, Mhiri C, Hu H, Jabbari K, Vardi A, Grandbastien MA, Bowler C. Potential impact of stress activated retrotransposons on genome evolution in a marine diatom. Bmc Genomics. 10: 624. PMID 20028555 DOI: 10.1186/1471-2164-10-624 |
0.609 |
|
| 2009 |
Worden AZ, Lee JH, Mock T, Rouzé P, Simmons MP, Aerts AL, Allen AE, Cuvelier ML, Derelle E, Everett MV, Foulon E, Grimwood J, Gundlach H, Henrissat B, Napoli C, et al. Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryotes Micromonas. Science (New York, N.Y.). 324: 268-72. PMID 19359590 DOI: 10.1126/Science.1167222 |
0.457 |
|
| 2009 |
Poretsky RS, Hewson I, Sun S, Allen AE, Zehr JP, Moran MA. Comparative day/night metatranscriptomic analysis of microbial communities in the North Pacific subtropical gyre. Environmental Microbiology. 11: 1358-75. PMID 19207571 DOI: 10.1111/J.1462-2920.2008.01863.X |
0.4 |
|
| 2008 |
Bowler C, Allen AE, Badger JH, Grimwood J, Jabbari K, Kuo A, Maheswari U, Martens C, Maumus F, Otillar RP, Rayko E, Salamov A, Vandepoele K, Beszteri B, Gruber A, et al. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Nature. 456: 239-44. PMID 18923393 DOI: 10.1038/Nature07410 |
0.639 |
|
| 2008 |
Allen AE, Laroche J, Maheswari U, Lommer M, Schauer N, Lopez PJ, Finazzi G, Fernie AR, Bowler C. Whole-cell response of the pennate diatom Phaeodactylum tricornutum to iron starvation. Proceedings of the National Academy of Sciences of the United States of America. 105: 10438-43. PMID 18653757 DOI: 10.1073/Pnas.0711370105 |
0.566 |
|
| 2007 |
Siaut M, Heijde M, Mangogna M, Montsant A, Coesel S, Allen A, Manfredonia A, Falciatore A, Bowler C. Molecular toolbox for studying diatom biology in Phaeodactylum tricornutum Gene. 406: 23-35. PMID 17658702 DOI: 10.1016/J.Gene.2007.05.022 |
0.595 |
|
| 2007 |
Kustka AB, Allen AE, Morel FMM. Sequence analysis and transcriptional regulation of iron acquisition genes in two marine diatoms Journal of Phycology. 43: 715-729. DOI: 10.1111/J.1529-8817.2007.00359.X |
0.385 |
|
| 2007 |
Montsant A, Allen AE, Coesel S, Martino AD, Falciatore A, Mangogna M, Siaut M, Heijde M, Jabbari K, Maheswari U, Rayko E, Vardi A, Apt KE, Berges JA, Chiovitti A, et al. Identification and comparative genomic analysis of signaling and regulatory components in the diatom Thalassiosira pseudonana Journal of Phycology. 43: 585-604. DOI: 10.1111/J.1529-8817.2007.00342.X |
0.65 |
|
| 2006 |
Allen AE, Vardi A, Bowler C. An ecological and evolutionary context for integrated nitrogen metabolism and related signaling pathways in marine diatoms. Current Opinion in Plant Biology. 9: 264-73. PMID 16603409 DOI: 10.1016/J.Pbi.2006.03.013 |
0.629 |
|
| 2005 |
Lopez PJ, Desclés J, Allen AE, Bowler C. Prospects in diatom research. Current Opinion in Biotechnology. 16: 180-6. PMID 15831384 DOI: 10.1016/J.Copbio.2005.02.002 |
0.622 |
|
| 2005 |
Allen AE, Booth MG, Verity PG, Frischer ME. Influence of nitrate availability on the distribution and abundance of heterotrophic bacterial nitrate assimilation genes in the Barents Sea during summer Aquatic Microbial Ecology. 39: 247-255. DOI: 10.3354/Ame039247 |
0.357 |
|
| 2005 |
Allen AE, Ward BB, Song B. Characterization of diatom (Bacillariophyceae) nitrate reductase genes and their detection in marine phytoplankton communities Journal of Phycology. 41: 95-104. DOI: 10.1111/J.1529-8817.2005.04090.X |
0.37 |
|
| 2004 |
Armbrust EV, Berges JA, Bowler C, Green BR, Martinez D, Putnam NH, Zhou S, Allen AE, Apt KE, Bechner M, Brzezinski MA, Chaal BK, Chiovitti A, Davis AK, Demarest MS, et al. The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science (New York, N.Y.). 306: 79-86. PMID 15459382 DOI: 10.1126/Science.1101156 |
0.723 |
|
| 2002 |
Allen AE, Howard-Jones MH, Booth MG, Frischer ME, Verity PG, Bronk DA, Sanderson MP. Importance of heterotrophic bacterial assimilation of ammonium and nitrate in the Barents Sea during summer Journal of Marine Systems. 38: 93-108. DOI: 10.1016/S0924-7963(02)00171-9 |
0.315 |
|
| 2002 |
Howard-Jones MH, Ballard VD, Allen AE, Frischer ME, Verity PG. Distribution of bacterial biomass and activity in the marginal ice zone of the central Barents Sea during summer Journal of Marine Systems. 38: 77-91. DOI: 10.1016/S0924-7963(02)00170-7 |
0.316 |
|
| 2001 |
Allen AE, Booth MG, Frischer ME, Verity PG, Zehr JP, Zani S. Diversity and detection of nitrate assimilation genes in marine bacteria. Applied and Environmental Microbiology. 67: 5343-8. PMID 11679368 DOI: 10.1128/Aem.67.11.5343-5348.2001 |
0.38 |
|
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