| Year |
Citation |
Score |
| 2023 |
Abyadeh M, Gupta V, Liu X, Rossio V, Mirzaei M, Cornish J, Paulo JA, Haynes PA. Proteome-Wide Profiling Using Sample Multiplexing of a Human Cell Line Treated with Cannabidiol (CBD) and Tetrahydrocannabinol (THC). Proteomes. 11. PMID 37987316 DOI: 10.3390/proteomes11040036 |
0.609 |
|
| 2023 |
Abyadeh M, Gupta V, Paulo JA, Mahmoudabad AG, Shadfar S, Mirshahvaladi S, Gupta V, Nguyen CTO, Finkelstein DI, You Y, Haynes PA, Salekdeh GH, Graham SL, Mirzaei M. Amyloid-beta and tau protein beyond Alzheimer's disease. Neural Regeneration Research. 19: 1262-1276. PMID 37905874 DOI: 10.4103/1673-5374.386406 |
0.523 |
|
| 2023 |
Habibpourmehraban F, Masoomi-Aladizgeh F, Haynes PA. Effect of ABA Pre-Treatment on Rice Plant Transcriptome Response to Multiple Abiotic Stress. Biomolecules. 13. PMID 37892236 DOI: 10.3390/biom13101554 |
0.79 |
|
| 2023 |
Habibpourmehraban F, Wu Y, Masoomi-Aladizgeh F, Amirkhani A, Atwell BJ, Haynes PA. Pre-Treatment of Rice Plants with ABA Makes Them More Tolerant to Multiple Abiotic Stress. International Journal of Molecular Sciences. 24. PMID 37298579 DOI: 10.3390/ijms24119628 |
0.808 |
|
| 2023 |
Abyadeh M, Gupta V, Paulo JA, Sheriff S, Shadfar S, Fitzhenry M, Amirkhani A, Gupta V, Salekdeh GH, Haynes PA, Graham SL, Mirzaei M. Apolipoprotein ε in Brain and Retinal Neurodegenerative Diseases. Aging and Disease. 14: 1311-1330. PMID 37199411 DOI: 10.14336/AD.2023.0312-1 |
0.458 |
|
| 2023 |
Abyadeh M, Gupta V, Paulo JA, Sheriff S, Shadfar S, Fitzhenry M, Amirkhani A, Gupta V, Salekdeh GH, Haynes PA, Graham SL, Mirzaei M. Apolipoprotein ε in Brain and Retinal Neurodegenerative Diseases. Aging and Disease. PMID 37163427 DOI: 10.14336/AD.2023.0312 |
0.458 |
|
| 2023 |
Deng L, Gupta V, Abyadeh M, Chitranshi N, Pushpitha K, Wu Y, Gupta V, You Y, Paulo JA, Graham SL, Mirzaei M, Haynes PA. Oxidative Stress Induced Dysfunction of Protein Synthesis in 661W Mice Photoreceptor Cells. Proteomes. 11. PMID 37092453 DOI: 10.3390/proteomes11020012 |
0.759 |
|
| 2022 |
Habibpourmehraban F, Atwell BJ, Haynes PA. Unique and Shared Proteome Responses of Rice Plants () to Individual Abiotic Stresses. International Journal of Molecular Sciences. 23. PMID 36555193 DOI: 10.3390/ijms232415552 |
0.808 |
|
| 2022 |
Multari DH, Ravishankar P, Sullivan GJ, Power RK, Lord C, Fraser JA, Haynes PA. Proteomics dataset from 26th Dynasty Egyptian mummified remains sampled using minimally invasive skin sampling tape strips. Data in Brief. 45: 108562. PMID 36118295 DOI: 10.1016/j.dib.2022.108562 |
0.787 |
|
| 2022 |
Abdirad S, Wu Y, Ghorbanzadeh Z, Tazangi SE, Amirkhani A, Fitzhenry MJ, Kazemi M, Ghaffari MR, Koobaz P, Zeinalabedini M, Habibpourmehraban F, Masoomi-Aladizgeh F, Atwell BJ, Mirzaei M, Salekdeh GH, ... Haynes PA, et al. Proteomic analysis of the meristematic root zone in contrasting genotypes reveals new insights in drought tolerance in rice. Proteomics. e2200100. PMID 35920597 DOI: 10.1002/pmic.202200100 |
0.82 |
|
| 2022 |
Mirzaei M, Abyadeh M, Turner AJ, Wall RV, Chick JM, Paulo JA, Gupta VK, Basavarajappa D, Chitranshi N, Mirshahvaladi SSO, You Y, Fitzhenry MJ, Amirkhani A, Haynes PA, Klistorner A, et al. Fingolimod effects on the brain are mediated through biochemical modulation of bioenergetics, autophagy and neuroinflammatory networks. Proteomics. e2100247. PMID 35866514 DOI: 10.1002/pmic.202100247 |
0.534 |
|
| 2022 |
Abyadeh M, Tofigh N, Hosseinian S, Hasan M, Amirkhani A, Fitzhenry MJ, Gupta V, Chitranshi N, Salekdeh GH, Haynes PA, Gupta V, Shahpasand K, Mirzaei M. Key Genes and Biochemical Networks in Various Brain Regions Affected in Alzheimer's Disease. Cells. 11. PMID 35326437 DOI: 10.3390/cells11060987 |
0.473 |
|
| 2022 |
Abdirad S, Ghaffari MR, Majd A, Irian S, Soleymaniniya A, Daryani P, Koobaz P, Shobbar ZS, Farsad LK, Yazdanpanah P, Sadri A, Mirzaei M, Ghorbanzadeh Z, Kazemi M, Hadidi N, ... Haynes PA, et al. Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation. Frontiers in Plant Science. 13: 792079. PMID 35265092 DOI: 10.3389/fpls.2022.792079 |
0.548 |
|
| 2022 |
Habibpourmehraban F, Wu Y, Wu JX, Hamzelou S, Masoomi-Aladizgeh F, Kamath KS, Amirkhani A, Atwell BJ, Haynes PA. Multiple Abiotic Stresses Applied Simultaneously Elicit Distinct Responses in Two Contrasting Rice Cultivars. International Journal of Molecular Sciences. 23. PMID 35163659 DOI: 10.3390/ijms23031739 |
0.808 |
|
| 2021 |
Hezavehei M, Mirzaei M, Sharafi M, Wu Y, Gupta V, Fitzhenry M, Kouchesfahani HM, Eftekhari-Yazdi P, Baharvand H, Dalman A, Haynes PA, Shahverdi A, Salekdeh GH. Proteomics study reveals the molecular mechanisms underlying cryotolerance induced by mild sublethal stress in human sperm. Cell and Tissue Research. PMID 34729646 DOI: 10.1007/s00441-021-03537-1 |
0.593 |
|
| 2021 |
Abyadeh M, Gupta V, Paulo JA, Gupta V, Chitranshi N, Godinez A, Saks D, Hasan M, Amirkhani A, McKay M, Salekdeh GH, Haynes PA, Graham SL, Mirzaei M. A Proteomic View of Cellular and Molecular Effects of Cannabis. Biomolecules. 11. PMID 34680044 DOI: 10.3390/biom11101411 |
0.52 |
|
| 2021 |
Hamzelou S, Melino VJ, Plett DC, Kamath KS, Nawrocki A, Larsen MR, Atwell BJ, Haynes PA. The phosphoproteome of rice leaves responds to water and nitrogen supply. Molecular Omics. PMID 34291261 DOI: 10.1039/d1mo00137j |
0.802 |
|
| 2021 |
Abyadeh M, Gupta V, Chitranshi N, Gupta V, Wu Y, Saks D, Wander Wall R, Fitzhenry MJ, Basavarajappa D, You Y, Salekdeh GH, Haynes PA, Graham SL, Mirzaei M. Mitochondrial Dysfunction in Alzheimer's Disease - a Proteomics Perspective. Expert Review of Proteomics. PMID 33874826 DOI: 10.1080/14789450.2021.1918550 |
0.501 |
|
| 2021 |
Ghazizadeh Z, Fattahi F, Mirzaei M, Bayersaikhan D, Lee J, Chae S, Hwang D, Byun K, Tabar MS, Taleahmad S, Mirshahvaladi S, Shabani P, Fonoudi H, Haynes PA, Baharvand H, et al. Prospective Isolation of ISL1 Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy. Stem Cell Reports. 16: 666-668. PMID 33691147 DOI: 10.1016/j.stemcr.2021.01.012 |
0.422 |
|
| 2021 |
Deng L, Gupta VK, Wu Y, Pushpitha K, Chitranshi N, Gupta VB, Fitzhenry MJ, Moghaddam MZ, Karl T, Salekdeh GH, Graham SL, Haynes PA, Mirzaei M. Mouse model of Alzheimer's disease demonstrates differential effects of early disease pathology on various brain regions. Proteomics. e2000213. PMID 33559908 DOI: 10.1002/pmic.202000213 |
0.719 |
|
| 2021 |
Handler DC, Haynes PA. PeptideMind — Applying machine learning algorithms to assess replicate quality in shotgun proteomic data Softwarex. 13: 100644. DOI: 10.1016/j.softx.2020.100644 |
0.65 |
|
| 2020 |
Deng L, Handler DCL, Multari DH, Haynes PA. Comparison of protein and peptide fractionation approaches in protein identification and quantification from Saccharomyces cerevisiae. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1162: 122453. PMID 33279813 DOI: 10.1016/j.jchromb.2020.122453 |
0.809 |
|
| 2020 |
Masoomi-Aladizgeh F, Najeeb U, Hamzelou S, Pascovici D, Amirkhani A, Tan DKY, Mirzaei M, Haynes PA, Atwell BJ. Pollen development in cotton (Gossypium hirsutum) is highly sensitive to heat exposure during the tetrad stage. Plant, Cell & Environment. PMID 33047317 DOI: 10.1111/pce.13908 |
0.774 |
|
| 2020 |
Handler DCL, Cheng F, Shathili AM, Haynes PA. PeptideWitch-A Software Package to Produce High-Stringency Proteomics Data Visualizations from Label-Free Shotgun Proteomics Data. Proteomes. 8. PMID 32825686 DOI: 10.3390/Proteomes8030021 |
0.732 |
|
| 2020 |
Hamzelou S, Kamath KS, Masoomi-Aladizgeh F, Johnsen MM, Atwell BJ, Haynes PA. Wild and Cultivated Species of Rice Have Distinctive Proteomic Responses to Drought. International Journal of Molecular Sciences. 21. PMID 32825202 DOI: 10.3390/Ijms21175980 |
0.828 |
|
| 2020 |
Muralidharan S, Poon YY, Wright GC, Haynes PA, Lee NA. Quantitative proteomics analysis of high and low polyphenol expressing recombinant inbred lines (RILs) of peanut (Arachis hypogaea L.). Food Chemistry. 334: 127517. PMID 32711266 DOI: 10.1016/J.Foodchem.2020.127517 |
0.816 |
|
| 2020 |
Handler DCL, Haynes PA. Correction to "Statistics in Proteomics: A Meta-analysis of 100 Proteomics Papers Published in 2019". Journal of the American Society For Mass Spectrometry. PMID 32697095 DOI: 10.1021/Jasms.0C00253 |
0.724 |
|
| 2020 |
Mirzaei M, Gupta VK, Chitranshi N, Deng L, Pushpitha K, Abbasi M, Chick JM, Rajput R, Wu Y, McKay MJ, Salekdeh GH, Gupta VB, Haynes PA, Graham SL. Retinal proteomics of experimental glaucoma model reveal intraocular pressure-induced mediators of neurodegenerative changes. Journal of Cellular Biochemistry. PMID 32692886 DOI: 10.1002/Jcb.29822 |
0.784 |
|
| 2020 |
Deng L, Haynes PA, Wu Y, Amirkhani A, Kamath KS, Wu JX, Pushpitha K, Gupta V, Graham S, Gupta VK, Mirzaei M. Amyloid-beta peptide neurotoxicity in human neuronal cells is associated with modulation of insulin-like growth factor transport, lysosomal machinery and extracellular matrix receptor interactions. Neural Regeneration Research. 15: 2131-2142. PMID 32394972 DOI: 10.4103/1673-5374.282261 |
0.75 |
|
| 2020 |
Handler DCL, Haynes PA. Statistics in Proteomics: A Meta-analysis of 100 Proteomics Papers Published in 2019. Journal of the American Society For Mass Spectrometry. 31: 1337-1343. PMID 32324388 DOI: 10.1021/Jasms.9B00142 |
0.705 |
|
| 2020 |
Hamzelou S, Pascovici D, Kamath KS, Amirkhani A, McKay M, Mirzaei M, Atwell BJ, Haynes PA. Proteomic Responses to Drought Vary Widely Among Eight Diverse Genotypes of Rice (). International Journal of Molecular Sciences. 21. PMID 31935846 DOI: 10.3390/Ijms21010363 |
0.828 |
|
| 2020 |
Maryan KE, Lahiji HS, Farrokhi N, Haynes PA, Hamzelou S, Komeleh HH. Comparative Leaf Proteomics of Brassica napus Genotypes with Distinctive Levels of Early Cold Acclimation Plant Molecular Biology Reporter. 39: 317-334. DOI: 10.1007/s11105-020-01249-4 |
0.778 |
|
| 2019 |
Khatabi B, Gharechahi J, Ghaffari MR, Liu D, Haynes PA, McKay MJ, Mirzaei M, Salekdeh GH. Plant-microbe symbiosis: What has proteomics taught us? Proteomics. e1800105. PMID 31218790 DOI: 10.1002/Pmic.201800105 |
0.602 |
|
| 2019 |
Wu Y, Mirzaei M, Pascovici D, Haynes PA, Atwell BJ. Proteomes of leaf growing zones in rice genotypes with contrasting drought tolerance. Proteomics. e1800310. PMID 30891909 DOI: 10.1002/Pmic.201800310 |
0.667 |
|
| 2019 |
Deng L, Pushpitha K, Joseph C, Gupta V, Rajput R, Chitranshi N, Dheer Y, Amirkhani A, Kamath K, Pascovici D, Wu JX, Salekdeh GH, Haynes PA, Graham SL, Gupta VK, et al. Amyloid β Induces Early Changes in the Ribosomal Machinery, Cytoskeletal Organization and Oxidative Phosphorylation in Retinal Photoreceptor Cells. Frontiers in Molecular Neuroscience. 12: 24. PMID 30853886 DOI: 10.3389/Fnmol.2019.00024 |
0.746 |
|
| 2019 |
Mirzaei M, Pushpitha K, Deng L, Chitranshi N, Gupta V, Rajput R, Mangani AB, Dheer Y, Godinez A, McKay MJ, Kamath K, Pascovici D, Wu JX, Salekdeh GH, Karl T, ... Haynes PA, et al. Upregulation of Proteolytic Pathways and Altered Protein Biosynthesis Underlie Retinal Pathology in a Mouse Model of Alzheimer's Disease. Molecular Neurobiology. PMID 30707393 DOI: 10.1007/S12035-019-1479-4 |
0.773 |
|
| 2019 |
Wu Y, Mirzaei M, Atwell BJ, Haynes PA. Label-free and isobaric tandem mass tag (TMT) multiplexed quantitative proteomic data of two contrasting rice cultivars exposed to drought stress and recovery. Data in Brief. 22: 697-702. PMID 30656201 DOI: 10.1016/J.Dib.2018.12.041 |
0.648 |
|
| 2019 |
Rahiminejad M, Ledari MT, Mirzaei M, Ghorbanzadeh Z, Kavousi K, Ghaffari MR, Haynes PA, Komatsu S, Salekdeh GH. The Quest for Missing Proteins in Rice. Molecular Plant. 12: 4-6. PMID 30543994 DOI: 10.1016/J.Molp.2018.11.009 |
0.645 |
|
| 2019 |
Maher T, Mirzaei M, Pascovici D, Wright IJ, Haynes PA, Gallagher RV. Evidence from the proteome for local adaptation to extreme heat in a widespread tree species Functional Ecology. 33: 436-446. DOI: 10.1111/1365-2435.13260 |
0.526 |
|
| 2019 |
Ghaffari MR, Mirzaei M, Ghabooli M, Khatabi B, Wu Y, Zabet-Moghaddam M, Mohammadi-Nejad G, Haynes PA, Hajirezaei MR, Sepehri M, Salekdeh GH. Root endophytic fungus Piriformospora indica improves drought stress adaptation in barley by metabolic and proteomic reprogramming Environmental and Experimental Botany. 157: 197-210. DOI: 10.1016/J.Envexpbot.2018.10.002 |
0.631 |
|
| 2019 |
Khatabi B, Gharechahi J, Ghaffari MR, Liu D, Haynes PA, McKay MJ, Mirzaei M, Salekdeh GH. Front Cover: Plant–Microbe Symbiosis: What Has Proteomics Taught Us? Proteomics. 19: 1970141. DOI: 10.1002/Pmic.201970141 |
0.613 |
|
| 2019 |
Wu Y, Mirzaei M, Pascovici D, Haynes PA, Atwell BJ. Front Cover: Proteomes of Leaf‐Growing Zones in Rice Genotypes with Contrasting Drought Tolerance Proteomics. 19: 1970071. DOI: 10.1002/Pmic.201970071 |
0.584 |
|
| 2018 |
Shekari F, Han CL, Lee J, Mirzaei M, Gupta V, Haynes PA, Lee B, Baharvand H, Chen YJ, Hosseini Salekdeh G. Surface markers of human embryonic stem cells: a meta analysis of membrane proteomics reports. Expert Review of Proteomics. PMID 30358457 DOI: 10.1080/14789450.2018.1539669 |
0.604 |
|
| 2018 |
Handler D, Pascovici D, Mirzaei M, Gupta V, Salekdeh GH, Haynes PA. The Art of validating quantitative proteomics data. Proteomics. e1800222. PMID 30352137 DOI: 10.1002/Pmic.201800222 |
0.766 |
|
| 2018 |
George IS, Fennell AY, Haynes PA. Shotgun proteomic analysis of photoperiod regulated dormancy induction in grapevine. Journal of Proteomics. PMID 29857064 DOI: 10.1016/J.Jprot.2018.05.014 |
0.666 |
|
| 2018 |
Fathi A, Mirzaei M, Dolatyar B, Sharifitabar M, Bayat M, Shahbazi E, Lee J, Javan M, Zhang SC, Gupta V, Lee B, Haynes PA, Baharvand H, Salekdeh GH. Discovery of Novel Cell Surface Markers for Purification of Embryonic Dopamine progenitors for Transplantation in Parkinson's Disease Animal Models. Molecular & Cellular Proteomics : McP. PMID 29848781 DOI: 10.1074/Mcp.Ra118.000809 |
0.552 |
|
| 2018 |
Emery SJ, Baker L, Ansell BRE, Mirzaei M, Haynes PA, McConville MJ, Svärd SG, Jex AR. Differential protein expression and post-translational modifications in metronidazole-resistant Giardia duodenalis. Gigascience. 7. PMID 29688452 DOI: 10.1093/Gigascience/Giy024 |
0.769 |
|
| 2018 |
Ghazizadeh Z, Fattahi F, Mirzaei M, Bayersaikhan D, Lee J, Chae S, Hwang D, Byun K, Tabar MS, Taleahmad S, Mirshahvaladi S, Shabani P, Fonoudi H, Haynes PA, Baharvand H, et al. Prospective Isolation of ISL1Cardiac Progenitors from Human ESCs for Myocardial Infarction Therapy. Stem Cell Reports. PMID 29503094 DOI: 10.1016/J.Stemcr.2018.01.037 |
0.52 |
|
| 2018 |
Vaibhav V, Thompson EL, Raftos DA, Haynes PA. Potential protein biomarkers of QX disease resistance in selectively bred Sydney Rock Oysters Aquaculture. 495: 144-152. DOI: 10.1016/J.Aquaculture.2018.05.035 |
0.816 |
|
| 2017 |
Mirzaei M, Gupta VB, Chick JM, Greco TM, Wu Y, Chitranshi N, Wall RV, Hone E, Deng L, Dheer Y, Abbasi M, Rezaeian M, Braidy N, You Y, Salekdeh GH, ... Haynes PA, et al. Age-related neurodegenerative disease associated pathways identified in retinal and vitreous proteome from human glaucoma eyes. Scientific Reports. 7: 12685. PMID 28978942 DOI: 10.1038/S41598-017-12858-7 |
0.795 |
|
| 2017 |
Taleahmad S, Mirzaei M, Samadian A, Hassani SN, Haynes PA, Salekdeh GH, Baharvand H. Low Focal Adhesion Signaling Promotes Ground State Pluripotency of Mouse Embryonic Stem Cells. Journal of Proteome Research. 16: 3585-3595. PMID 28850235 DOI: 10.1021/Acs.Jproteome.7B00322 |
0.553 |
|
| 2017 |
Alikhani M, Mirzaei M, Sabbaghian M, Parsamatin P, Karamzadeh R, Adib S, Sodeifi N, Gilani MA, Zabet-Moghaddam M, Parker L, Wo Y, Gupta V, Haynes PA, Gourabi H, Baharvand H, et al. Quantitative proteomic analysis of human testis reveals system-wide molecular and cellular pathways associated with non-obstructive azoospermia. Journal of Proteomics. PMID 28213128 DOI: 10.1016/J.Jprot.2017.02.007 |
0.631 |
|
| 2017 |
Mirzaei M, Pascovici D, Wu JX, Chick J, Wu Y, Cooke B, Haynes P, Molloy MP. TMT One-Stop Shop: From Reliable Sample Preparation to Computational Analysis Platform. Methods in Molecular Biology (Clifton, N.J.). 1549: 45-66. PMID 27975283 DOI: 10.1007/978-1-4939-6740-7_5 |
0.578 |
|
| 2016 |
Jones J, Mirzaei M, Ravishankar P, Xavier D, Lim DS, Shin DH, Bianucci R, Haynes PA. Identification of proteins from 4200-year-old skin and muscle tissue biopsies from ancient Egyptian mummies of the first intermediate period shows evidence of acute inflammation and severe immune response. Philosophical Transactions. Series a, Mathematical, Physical, and Engineering Sciences. 374. PMID 27644972 DOI: 10.1098/Rsta.2015.0373 |
0.794 |
|
| 2016 |
Franklin JL, Mirzaei M, Wearne TA, Homewood J, Goodchild AK, Haynes PA, Cornish JL. Extended exposure to sugar and/or caffeine produces distinct behavioral and neurochemical profiles in the orbitofrontal cortex of rats: Implications for neural function. Proteomics. PMID 27588558 DOI: 10.1002/Pmic.201600032 |
0.577 |
|
| 2016 |
Haynes PA, Stein SE, Washburn MP. Data quality issues in proteomics. Proteomics. PMID 27550836 DOI: 10.1002/Pmic.201600277 |
0.373 |
|
| 2016 |
Raftos DA, Melwani AR, Haynes PA, Muralidharan S, Birch GF, Amaral V, Thompson EL, Taylor DA. The biology of environmental stress: molecular biomarkers in Sydney rock oysters (Saccostrea glomerata). Environmental Science. Processes & Impacts. PMID 27548823 DOI: 10.1039/C6Em00322B |
0.794 |
|
| 2016 |
Pascovici D, Handler D, Wu JX, Haynes PA. Multiple testing corrections in quantitative proteomics: A useful but blunt tool. Proteomics. PMID 27461997 DOI: 10.1002/Pmic.201600044 |
0.698 |
|
| 2016 |
Emery SJ, Lacey E, Haynes PA. Quantitative proteomics in Giardia duodenalis-Achievements and challenges. Molecular and Biochemical Parasitology. PMID 27449313 DOI: 10.1016/J.Molbiopara.2016.07.002 |
0.803 |
|
| 2016 |
Rattanakan S, George I, Haynes PA, Cramer GR. Relative quantification of phosphoproteomic changes in grapevine (Vitis vinifera L.) leaves in response to abscisic acid. Horticulture Research. 3: 16029. PMID 27366326 DOI: 10.1038/Hortres.2016.29 |
0.709 |
|
| 2016 |
Wu Y, Mirzaei M, Pascovici D, Chick JM, Atwell BJ, Haynes PA. Quantitative proteomic analysis of two different rice varieties reveals that drought tolerance is correlated with reduced abundance of photosynthetic machinery and increased abundance of ClpD1 protease. Journal of Proteomics. PMID 27195813 DOI: 10.1016/J.Jprot.2016.05.014 |
0.659 |
|
| 2016 |
Mousavi SA, Pouya FM, Ghaffari MR, Mirzaei M, Ghaffari A, Alikhani M, Ghareyazie M, Komatsu S, Haynes PA, Salekdeh GH. PlantPReS: A database for plant proteome response to stress. Journal of Proteomics. PMID 26947550 DOI: 10.1016/J.Jprot.2016.03.009 |
0.652 |
|
| 2016 |
Franklin JL, Mirzaei M, Wearne TA, Homewood J, Goodchild AK, Haynes PA, Cornish JL. Quantitative proteomic analysis of the orbital frontal cortex in rats following extended exposure to caffeine reveals extensive changes to protein expression: implications for neurological disease. Journal of Proteome Research. PMID 26941107 DOI: 10.1021/Acs.Jproteome.5B01043 |
0.6 |
|
| 2016 |
Emery SJ, Mirzaei M, Vuong D, Pascovici D, Chick JM, Lacey E, Haynes PA. Induction of virulence factors in Giardia duodenalis independent of host attachment. Scientific Reports. 6: 20765. PMID 26867958 DOI: 10.1038/Srep20765 |
0.778 |
|
| 2016 |
Tacchi JL, Raymond BB, Haynes PA, Berry IJ, Widjaja M, Bogema DR, Woolley LK, Jenkins C, Minion FC, Padula MP, Djordjevic SP. Post-translational processing targets functionally diverse proteins in Mycoplasma hyopneumoniae. Open Biology. 6. PMID 26865024 DOI: 10.1098/Rsob.150210 |
0.416 |
|
| 2016 |
Emery SJ, Mirzaei M, Vuong D, Pascovici D, Chick JM, Lacey E, Haynes PA. Induction of virulence factors in giardia duodenalis independent of host attachment Scientific Reports. 6. DOI: 10.1038/srep20765 |
0.753 |
|
| 2016 |
Vaibhav V, Lepretre M, Thompson E, Raftos D, Haynes PA. Biomarkers of Winter Mortality resistance in selectively bred Sydney rock oysters (Saccostrea glomerata) Aquaculture. 465: 323-329. DOI: 10.1016/J.Aquaculture.2016.09.006 |
0.798 |
|
| 2015 |
Taleahmad S, Mirzaei M, Parker LM, Hassani SN, Mollamohammadi S, Sharifi-Zarchi A, Haynes PA, Baharvand H, Salekdeh GH. Proteome Analysis of Ground State Pluripotency. Scientific Reports. 5: 17985. PMID 26671762 DOI: 10.1038/Srep17985 |
0.622 |
|
| 2015 |
Franklin JL, Mirzaei M, Wearne TA, Sauer MK, Homewood J, Goodchild AK, Haynes PA, Cornish JL. Quantitative shotgun proteomics reveals extensive changes to the proteome of the orbitofrontal cortex in rats that are hyperactive following withdrawal from a high sugar diet. Proteomics. PMID 26621205 DOI: 10.1002/Pmic.201500126 |
0.606 |
|
| 2015 |
Ghan R, Van Sluyter SC, Hochberg U, Degu A, Hopper DW, Tillet RL, Schlauch KA, Haynes PA, Fait A, Cramer GR. Five omic technologies are concordant in differentiating the biochemical characteristics of the berries of five grapevine (Vitis vinifera L.) cultivars. Bmc Genomics. 16: 946. PMID 26573226 DOI: 10.1186/S12864-015-2115-Y |
0.34 |
|
| 2015 |
Kaufman K, Jenkins Y, Alomari M, Mirzaei M, Best O, Pascovici D, Mactier S, Mulligan S, Haynes P, Christopherson RI. The Hsp90 inhibitor SNX-7081 is synergistic with fludarabine nucleoside via DNA damage and repair mechanisms in human, p53-negative chronic lymphocytic leukemia. Oncotarget. PMID 26556860 DOI: 10.18632/Oncotarget.5715 |
0.484 |
|
| 2015 |
Emery SJ, Lacey E, Haynes PA. Data from a proteomic baseline study of Assemblage A in Giardia duodenalis. Data in Brief. 5: 23-7. PMID 26380841 DOI: 10.1016/J.Dib.2015.08.003 |
0.79 |
|
| 2015 |
Jangravi Z, Tabar MS, Mirzaei M, Parsamatin P, Vakilian H, Alikhani M, Shabani M, Haynes PA, Goodchild AK, Gourabi H, Baharvand H, Salekdeh GH. Two Splice Variants of Y Chromosome-Located Lysine-Specific Demethylase 5D Have Distinct Function in Prostate Cancer Cell Line (DU-145). Journal of Proteome Research. 14: 3492-502. PMID 26215926 DOI: 10.1021/Acs.Jproteome.5B00333 |
0.603 |
|
| 2015 |
Vakilian H, Mirzaei M, Sharifi Tabar M, Pooyan P, Habibi Rezaee L, Parker L, Haynes PA, Gourabi H, Baharvand H, Salekdeh GH. DDX3Y, a Male-Specific Region of Y Chromosome Gene, May Modulate Neuronal Differentiation. Journal of Proteome Research. 14: 3474-83. PMID 26144214 DOI: 10.1021/Acs.Jproteome.5B00512 |
0.574 |
|
| 2015 |
Emery SJ, Pascovi D, Lacey E, Haynes PA. The generation gap: Proteome changes and strain variation during encystation in Giardia duodenalis. Molecular and Biochemical Parasitology. 201: 47-56. PMID 26045354 DOI: 10.1016/J.Molbiopara.2015.05.007 |
0.783 |
|
| 2015 |
Chakraborty S, Salekdeh GH, Yang P, Woo SH, Chin CF, Gehring C, Haynes PA, Mirzaei M, Komatsu S. Proteomics of Important Food Crops in the Asia Oceania Region: Current Status and Future Perspectives. Journal of Proteome Research. 14: 2723-44. PMID 26035454 DOI: 10.1021/Acs.Jproteome.5B00211 |
0.541 |
|
| 2015 |
George IS, Pascovici D, Mirzaei M, Haynes PA. Quantitative proteomic analysis of cabernet sauvignon grape cells exposed to thermal stresses reveals alterations in sugar and phenylpropanoid metabolism. Proteomics. 15: 3048-60. PMID 25959233 DOI: 10.1002/Pmic.201400541 |
0.752 |
|
| 2015 |
George IS, Fennell AY, Haynes PA. Protein identification and quantification from riverbank grape, Vitis riparia: Comparing SDS-PAGE and FASP-GPF techniques for shotgun proteomic analysis. Proteomics. 15: 3061-5. PMID 25929842 DOI: 10.1002/Pmic.201500085 |
0.694 |
|
| 2015 |
Emery SJ, Lacey E, Haynes PA. Quantitative proteomic analysis of Giardia duodenalis assemblage A: A baseline for host, assemblage, and isolate variation. Proteomics. PMID 25728068 DOI: 10.1002/Pmic.201400434 |
0.786 |
|
| 2015 |
Wearne TA, Mirzaei M, Franklin JL, Goodchild AK, Haynes PA, Cornish JL. Methamphetamine-induced sensitization is associated with alterations to the proteome of the prefrontal cortex: implications for the maintenance of psychotic disorders. Journal of Proteome Research. 14: 397-410. PMID 25245100 DOI: 10.1021/Pr500719F |
0.585 |
|
| 2015 |
Varkey D, Mazard S, Ostrowski M, Tetu SG, Haynes P, Paulsen IT. Effects of low temperature on tropical and temperate isolates of marine Synechococcus Isme Journal. DOI: 10.1038/Ismej.2015.179 |
0.318 |
|
| 2015 |
Percy AJ, Tamura-Wells J, Albar JP, Aloria K, Amirkhani A, Araujo GDT, Arizmendi JM, Blanco FJ, Canals F, Cho JY, Colomé-Calls N, Corrales FJ, Domont G, Espadas G, Fernandez-Puente P, ... ... Haynes PA, et al. Inter-laboratory evaluation of instrument platforms and experimental workflows for quantitative accuracy and reproducibility assessment Eupa Open Proteomics. 8: 6-15. DOI: 10.1016/J.Euprot.2015.06.001 |
0.566 |
|
| 2015 |
Goodchild AK, Bokiniec P, Hassan SF, Haynes P, Parker LM, Wall RV, Moghaddam M, Mirzaei M. Molecular changes in the adrenal medulla and brain following glucoprivation Autonomic Neuroscience: Basic and Clinical. 192: 45-46. DOI: 10.1016/J.Autneu.2015.07.394 |
0.507 |
|
| 2014 |
George IS, Haynes PA. Current perspectives in proteomic analysis of abiotic stress in Grapevines. Frontiers in Plant Science. 5: 686. PMID 25538720 DOI: 10.3389/Fpls.2014.00686 |
0.647 |
|
| 2014 |
Emery SJ, van Sluyter S, Haynes PA. Proteomic analysis in Giardia duodenalis yields insights into strain virulence and antigenic variation. Proteomics. 14: 2523-34. PMID 25266764 DOI: 10.1002/Pmic.201400144 |
0.785 |
|
| 2014 |
Mirzaei M, Soltani N, Sarhadi E, George IS, Neilson KA, Pascovici D, Shahbazian S, Haynes PA, Atwell BJ, Salekdeh GH. Manipulating root water supply elicits major shifts in the shoot proteome. Journal of Proteome Research. 13: 517-26. PMID 24266738 DOI: 10.1021/Pr400696U |
0.812 |
|
| 2014 |
Neilson KA, George IS, Emery SJ, Muralidharan S, Mirzaei M, Haynes PA. Analysis of rice proteins using SDS-PAGE shotgun proteomics. Methods in Molecular Biology (Clifton, N.J.). 1072: 289-302. PMID 24136530 DOI: 10.1007/978-1-62703-631-3_21 |
0.807 |
|
| 2013 |
Komatsu S, Haynes PA. Realizing the potential of agricultural and environmental proteomics. Journal of Proteome Research. 12: 4651. PMID 24175652 DOI: 10.1021/Pr4010426 |
0.304 |
|
| 2013 |
Kottapalli KR, Zabet-Moghaddam M, Rowland D, Faircloth W, Mirzaei M, Haynes PA, Payton P. Shotgun label-free quantitative proteomics of water-deficit-stressed midmature peanut (Arachis hypogaea L.) seed. Journal of Proteome Research. 12: 5048-57. PMID 24094305 DOI: 10.1021/Pr400936D |
0.649 |
|
| 2013 |
Francis HM, Mirzaei M, Pardey MC, Haynes PA, Cornish JL. Proteomic analysis of the dorsal and ventral hippocampus of rats maintained on a high fat and refined sugar diet. Proteomics. 13: 3076-91. PMID 23963966 DOI: 10.1002/Pmic.201300124 |
0.612 |
|
| 2013 |
Chapman B, Castellana N, Apffel A, Ghan R, Cramer GR, Bellgard M, Haynes PA, Van Sluyter SC. Plant proteogenomics: from protein extraction to improved gene predictions. Methods in Molecular Biology (Clifton, N.J.). 1002: 267-94. PMID 23625410 DOI: 10.1007/978-1-62703-360-2_21 |
0.405 |
|
| 2013 |
Neilson KA, Keighley T, Pascovici D, Cooke B, Haynes PA. Label-free quantitative shotgun proteomics using normalized spectral abundance factors. Methods in Molecular Biology (Clifton, N.J.). 1002: 205-22. PMID 23625406 DOI: 10.1007/978-1-62703-360-2_17 |
0.79 |
|
| 2013 |
Neilson KA, Scafaro AP, Chick JM, George IS, Van Sluyter SC, Gygi SP, Atwell BJ, Haynes PA. The influence of signals from chilled roots on the proteome of shoot tissues in rice seedlings. Proteomics. 13: 1922-33. PMID 23580440 DOI: 10.1002/Pmic.201200475 |
0.819 |
|
| 2013 |
Cramer GR, Van Sluyter SC, Hopper DW, Pascovici D, Keighley T, Haynes PA. Proteomic analysis indicates massive changes in metabolism prior to the inhibition of growth and photosynthesis of grapevine (Vitis vinifera L.) in response to water deficit. Bmc Plant Biology. 13: 49. PMID 23514573 DOI: 10.1186/1471-2229-13-49 |
0.342 |
|
| 2013 |
Dheilly NM, Raftos DA, Haynes PA, Smith LC, Nair SV. Shotgun proteomics of coelomic fluid from the purple sea urchin, Strongylocentrotus purpuratus. Developmental and Comparative Immunology. 40: 35-50. PMID 23353016 DOI: 10.1016/J.Dci.2013.01.007 |
0.388 |
|
| 2013 |
Jangravi Z, Alikhani M, Arefnezhad B, Sharifi Tabar M, Taleahmad S, Karamzadeh R, Jadaliha M, Mousavi SA, Ahmadi Rastegar D, Parsamatin P, Vakilian H, Mirshahvaladi S, Sabbaghian M, Mohseni Meybodi A, Mirzaei M, ... ... Haynes PA, et al. A fresh look at the male-specific region of the human Y chromosome. Journal of Proteome Research. 12: 6-22. PMID 23253012 DOI: 10.1021/Pr300864K |
0.584 |
|
| 2013 |
Monavarfeshani A, Mirzaei M, Sarhadi E, Amirkhani A, Khayam Nekouei M, Haynes PA, Mardi M, Salekdeh GH. Shotgun proteomic analysis of the Mexican lime tree infected with "CandidatusPhytoplasma aurantifolia". Journal of Proteome Research. 12: 785-95. PMID 23244174 DOI: 10.1021/Pr300865T |
0.626 |
|
| 2013 |
Franklin JL, Mirzaei M, Sauer MK, Wearne TA, Goodchild AK, Haynes PA, Cornish JL. P.6.c.005 Exposure to caffeine and sucrose changes locomotor behaviour, neurobiology and response to acute methamphetamine challenge European Neuropsychopharmacology. 23. DOI: 10.1016/S0924-977X(13)70903-9 |
0.508 |
|
| 2012 |
Marangon M, Van Sluyter SC, Robinson EM, Muhlack RA, Holt HE, Haynes PA, Godden PW, Smith PA, Waters EJ. Degradation of white wine haze proteins by Aspergillopepsin I and II during juice flash pasteurization. Food Chemistry. 135: 1157-65. PMID 22953838 DOI: 10.1016/J.Foodchem.2012.05.042 |
0.37 |
|
| 2012 |
Muralidharan S, Thompson E, Raftos D, Birch G, Haynes PA. Quantitative proteomics of heavy metal stress responses in Sydney rock oysters Proteomics. 12: 906-921. PMID 22539440 DOI: 10.1002/Pmic.201100417 |
0.807 |
|
| 2012 |
Mirzaei M, Pascovici D, Atwell BJ, Haynes PA. Differential regulation of aquaporins, small GTPases and V-ATPases proteins in rice leaves subjected to drought stress and recovery. Proteomics. 12: 864-77. PMID 22539437 DOI: 10.1002/Pmic.201100389 |
0.64 |
|
| 2012 |
Dheilly NM, Haynes PA, Raftos DA, Nair SV. Time course proteomic profiling of cellular responses to immunological challenge in the sea urchin, Heliocidaris erythrogramma. Developmental and Comparative Immunology. 37: 243-56. PMID 22446733 DOI: 10.1016/J.Dci.2012.03.006 |
0.445 |
|
| 2012 |
Pascovici D, Keighley T, Mirzaei M, Haynes PA, Cooke B. PloGO: plotting gene ontology annotation and abundance in multi-condition proteomics experiments. Proteomics. 12: 406-10. PMID 22213732 DOI: 10.1002/Pmic.201100445 |
0.615 |
|
| 2012 |
Mirzaei M, Soltani N, Sarhadi E, Pascovici D, Keighley T, Salekdeh GH, Haynes PA, Atwell BJ. Shotgun proteomic analysis of long-distance drought signaling in rice roots. Journal of Proteome Research. 11: 348-58. PMID 22047206 DOI: 10.1021/Pr2008779 |
0.631 |
|
| 2012 |
Thompson EL, Taylor DA, Nair SV, Birch G, Haynes PA, Raftos DA. Proteomic discovery of biomarkers of metal contamination in Sydney Rock oysters (Saccostrea glomerata). Aquatic Toxicology (Amsterdam, Netherlands). 109: 202-12. PMID 22030410 DOI: 10.1016/J.Aquatox.2011.09.018 |
0.438 |
|
| 2012 |
Che Y, Mirzaei M, Best G, Zhong L, Raftery M, Mulligan SP, Haynes PA, Christopherson RI. Proteomic analysis of drug synergy between the Hsp90 inhibitor SNX7081 and fludarabine F1000research. 3. DOI: 10.7490/F1000Research.1089917.1 |
0.53 |
|
| 2011 |
Gammulla CG, Pascovici D, Atwell BJ, Haynes PA. Differential proteomic response of rice (Oryza sativa) leaves exposed to high- and low-temperature stress. Proteomics. 11: 2839-50. PMID 21695689 DOI: 10.1002/Pmic.201100068 |
0.344 |
|
| 2011 |
Alexova R, Haynes PA, Ferrari BC, Neilan BA. Comparative protein expression in different strains of the bloom-forming cyanobacterium Microcystis aeruginosa. Molecular & Cellular Proteomics : McP. 10: M110.003749. PMID 21610102 DOI: 10.1074/Mcp.M110.003749 |
0.397 |
|
| 2011 |
Thompson EL, Taylor DA, Nair SV, Birch G, Haynes PA, Raftos DA. A proteomic analysis of the effects of metal contamination on Sydney Rock Oyster (Saccostrea glomerata) haemolymph. Aquatic Toxicology (Amsterdam, Netherlands). 103: 241-9. PMID 21530475 DOI: 10.1016/J.Aquatox.2011.03.004 |
0.421 |
|
| 2011 |
Agrawal GK, Job D, Zivy M, Agrawal VP, Bradshaw RA, Dunn MJ, Haynes PA, van Wijk KJ, Kikuchi S, Renaut J, Weckwerth W, Rakwal R. Time to articulate a vision for the future of plant proteomics - A global perspective: An initiative for establishing the International Plant Proteomics Organization (INPPO). Proteomics. 11: 1559-68. PMID 21433283 DOI: 10.1002/Pmic.201000608 |
0.312 |
|
| 2011 |
Neilson KA, Mariani M, Haynes PA. Quantitative proteomic analysis of cold-responsive proteins in rice. Proteomics. 11: 1696-706. PMID 21433000 DOI: 10.1002/Pmic.201000727 |
0.829 |
|
| 2011 |
Neilson KA, Ali NA, Muralidharan S, Mirzaei M, Mariani M, Assadourian G, Lee A, Van Sluyter SC, Haynes PA. Less label, more free: Approaches in label-free quantitative mass spectrometry Proteomics. 11: 535-553. PMID 21243637 DOI: 10.1002/Pmic.201000553 |
0.762 |
|
| 2011 |
Marangon M, Van Sluyter SC, Neilson KA, Chan C, Haynes PA, Waters EJ, Falconer RJ. Roles of grape thaumatin-like protein and chitinase in white wine haze formation. Journal of Agricultural and Food Chemistry. 59: 733-40. PMID 21189017 DOI: 10.1021/Jf1038234 |
0.781 |
|
| 2011 |
Mirzaei M, Pascovici D, Keighley T, George I, Voelckel C, Heenan PB, Haynes PA. Shotgun proteomic profiling of five species of New Zealand Pachycladon. Proteomics. 11: 166-71. PMID 21182204 DOI: 10.1002/Pmic.200900816 |
0.726 |
|
| 2011 |
Dheilly NM, Haynes PA, Bove U, Nair SV, Raftos DA. Comparative proteomic analysis of a sea urchin (Heliocidaris erythrogramma) antibacterial response revealed the involvement of apextrin and calreticulin. Journal of Invertebrate Pathology. 106: 223-9. PMID 20875422 DOI: 10.1016/J.Jip.2010.09.008 |
0.412 |
|
| 2011 |
Lee A, Chick JM, Kolarich D, Haynes PA, Robertson GR, Tsoli M, Jankova L, Clarke SJ, Packer NH, Baker MS. Liver membrane proteome glycosylation changes in mice bearing an extra-hepatic tumor. Molecular & Cellular Proteomics : McP. 10: M900538MCP200. PMID 20167946 DOI: 10.1074/Mcp.M900538-Mcp200 |
0.526 |
|
| 2011 |
Che Y, Best G, Mirzaei M, Pascovici D, Haynes PA, Mulligan S, Christopherson RI. 5.26 Hsp90 Inhibitor Restores P53-Mutated MEC1 Chronic Lymphocytic Leukemia Cell Sensitivity to Fludarabine by Downregulating DNA Repair and Endoplasmic Reticulum Chaperone Proteins Clinical Lymphoma Myeloma and Leukemia. 11: S260-S261. DOI: 10.1016/J.Clml.2011.09.180 |
0.541 |
|
| 2010 |
Gammulla CG, Pascovici D, Atwell BJ, Haynes PA. Differential metabolic response of cultured rice (Oryza sativa) cells exposed to high- and low-temperature stress. Proteomics. 10: 3001-19. PMID 20645384 DOI: 10.1002/Pmic.201000054 |
0.366 |
|
| 2010 |
Voelckel C, Mirzaei M, Reichelt M, Luo Z, Pascovici D, Heenan PB, Schmidt S, Janssen B, Haynes PA, Lockhart PJ. Transcript and protein profiling identify candidate gene sets of potential adaptive significance in New Zealand Pachycladon. Bmc Evolutionary Biology. 10: 151. PMID 20482888 DOI: 10.1186/1471-2148-10-151 |
0.574 |
|
| 2010 |
Sobti M, Cubeddu L, Haynes PA, Mabbutt BC. Engineered rings of mixed yeast Lsm proteins show differential interactions with translation factors and U-rich RNA. Biochemistry. 49: 2335-45. PMID 20108977 DOI: 10.1021/Bi901767W |
0.327 |
|
| 2010 |
Kiesler P, Haynes PA, Shi L, Kao PN, Wysocki VH, Vercelli D. NF45 and NF90 regulate HS4-dependent interleukin-13 transcription in T cells. The Journal of Biological Chemistry. 285: 8256-67. PMID 20051514 DOI: 10.1074/Jbc.M109.041004 |
0.592 |
|
| 2010 |
Neilson KA, Gammulla CG, Mirzaei M, Imin N, Haynes PA. Proteomic analysis of temperature stress in plants. Proteomics. 10: 828-45. PMID 19953552 DOI: 10.1002/Pmic.200900538 |
0.814 |
|
| 2010 |
Scafaro AP, Haynes PA, Atwell BJ. Physiological and molecular changes in Oryza meridionalis Ng., a heat-tolerant species of wild rice. Journal of Experimental Botany. 61: 191-202. PMID 19819927 DOI: 10.1093/Jxb/Erp294 |
0.313 |
|
| 2009 |
Van Sluyter SC, Marangon M, Stranks SD, Neilson KA, Hayasaka Y, Haynes PA, Menz RI, Waters EJ. Two-step purification of pathogenesis-related proteins from grape juice and crystallization of thaumatin-like proteins. Journal of Agricultural and Food Chemistry. 57: 11376-82. PMID 19886666 DOI: 10.1021/Jf902365R |
0.806 |
|
| 2009 |
Marangon M, Van Sluyter SC, Haynes PA, Waters EJ. Grape and wine proteins: their fractionation by hydrophobic interaction chromatography and identification by chromatographic and proteomic analysis. Journal of Agricultural and Food Chemistry. 57: 4415-25. PMID 19354294 DOI: 10.1021/Jf9000742 |
0.447 |
|
| 2009 |
Bassett SA, Bond JJ, Kwan FY, McCulloch AF, Haynes PA, Johnson RD, Bryan GT, Jordan TW. Proteomic analysis of a filamentous fungal endophyte using EST datasets. Proteomics. 9: 2295-300. PMID 19337992 DOI: 10.1002/Pmic.200800585 |
0.395 |
|
| 2009 |
Kelleher ES, Watts TD, LaFlamme BA, Haynes PA, Markow TA. Proteomic analysis of Drosophila mojavensis male accessory glands suggests novel classes of seminal fluid proteins. Insect Biochemistry and Molecular Biology. 39: 366-71. PMID 19328853 DOI: 10.1016/J.Ibmb.2009.03.003 |
0.38 |
|
| 2009 |
Lee A, Kolarich D, Haynes PA, Jensen PH, Baker MS, Packer NH. Rat liver membrane glycoproteome: Enrichment by phase partitioning and glycoprotein capture Journal of Proteome Research. 8: 770-781. PMID 19125615 DOI: 10.1021/Pr800910W |
0.567 |
|
| 2009 |
Gerlach JQ, Bhavanandan VP, Haynes PA, Joshi L. Partial characterization of a vicilin-like glycoprotein from seeds of flowering tobacco (Nicotiana sylvestris). Journal of Botany. 2009: 1-12. DOI: 10.1155/2009/560394 |
0.426 |
|
| 2008 |
Chick JM, Haynes PA, Bjellqvist B, Baker MS. A combination of immobilised pH gradienhts improves membrane proteomics Journal of Proteome Research. 7: 4974-4981. PMID 18837535 DOI: 10.1021/Pr800349F |
0.443 |
|
| 2008 |
Naidoo N, Harrop SJ, Sobti M, Haynes PA, Szymczyna BR, Williamson JR, Curmi PM, Mabbutt BC. Crystal structure of Lsm3 octamer from Saccharomyces cerevisiae: implications for Lsm ring organisation and recruitment. Journal of Molecular Biology. 377: 1357-71. PMID 18329667 DOI: 10.1016/J.Jmb.2008.01.007 |
0.308 |
|
| 2008 |
Chick JM, Haynes PA, Molloy MP, Bjellqvist B, Baker MS, Len ACL. Characterization of the rat liver membrane proteome using peptide immobilized pH gradient isoelectric focusing Journal of Proteome Research. 7: 1036-1045. PMID 18211008 DOI: 10.1021/Pr700611W |
0.388 |
|
| 2008 |
Baker MS, Haynes P, Len A, Molloy M, Lee A, Saldanha R, Chick J. Desperately Seeking Comprehensive Mammalian Membrane Proteomics Journal of Proteomics & Bioinformatics. 108-109. DOI: 10.4172/Jpb.S1000088 |
0.392 |
|
| 2007 |
Hattrup E, Neilson KA, Breci L, Haynes PA. Proteomic analysis of shade-avoidance response in tomato leaves Journal of Agricultural and Food Chemistry. 55: 8310-8318. PMID 17874839 DOI: 10.1021/Jf0713049 |
0.823 |
|
| 2007 |
Haynes PA, Roberts TH. Subcellular shotgun proteomics in plants: looking beyond the usual suspects. Proteomics. 7: 2963-75. PMID 17703495 DOI: 10.1002/Pmic.200700216 |
0.363 |
|
| 2007 |
Breci L, Haynes PA. Two-dimensional nanoflow liquid chromatography-tandem mass spectrometry of proteins extracted from rice leaves and roots Methods in Molecular Biology (Clifton, N.J.). 355: 249-266. PMID 17093316 DOI: 10.1385/1-59745-227-0:249 |
0.45 |
|
| 2007 |
Keeler M, Letarte J, Hattrup E, Hickman F, Haynes PA. Two-dimensional differential in-gel electrophoresis (DIGE) of leaf and roots of Lycopersicon esculentum. Methods in Molecular Biology (Clifton, N.J.). 355: 157-74. PMID 17093310 DOI: 10.1385/1-59745-227-0:157 |
0.452 |
|
| 2006 |
Rohrbough JG, Breci L, Merchant N, Miller S, Haynes PA. Verification of single-peptide protein identifications by the application of complementary database search algorithms. Journal of Biomolecular Techniques : Jbt. 17: 327-32. PMID 17122065 |
0.8 |
|
| 2006 |
Haynes PA, Miller S, Radabaugh T, Galligan M, Breci L, Rohrbough J, Hickman F, Merchant N. The wildcat toolbox: a set of perl script utilities for use in peptide mass spectral database searching and proteomics experiments. Journal of Biomolecular Techniques : Jbt. 17: 97-102. PMID 16741236 |
0.773 |
|
| 2006 |
Orsborn KI, Shubitz LF, Peng T, Kellner EM, Orbach MJ, Haynes PA, Galgiani JN. Protein expression profiling of Coccidioides posadasii by two-dimensional differential in-gel electrophoresis and evaluation of a newly recognized peroxisomal matrix protein as a recombinant vaccine candidate. Infection and Immunity. 74: 1865-72. PMID 16495561 DOI: 10.1128/Iai.74.3.1865-1872.2006 |
0.364 |
|
| 2006 |
Frigeri LG, Radabaugh TR, Haynes PA, Hildebrand M. Identification of proteins from a cell wall fraction of the diatom Thalassiosira pseudonana: insights into silica structure formation. Molecular & Cellular Proteomics : McP. 5: 182-93. PMID 16207702 DOI: 10.1074/Mcp.M500174-Mcp200 |
0.377 |
|
| 2005 |
Medina ML, Haynes PA, Breci L, Francisco WA. Analysis of secreted proteins from Aspergillus flavus. Proteomics. 5: 3153-61. PMID 16035112 DOI: 10.1002/Pmic.200401136 |
0.45 |
|
| 2005 |
Manuell AL, Yamaguchi K, Haynes PA, Milligan RA, Mayfield SP. Composition and structure of the 80S ribosome from the green alga Chlamydomonas reinhardtii: 80S ribosomes are conserved in plants and animals. Journal of Molecular Biology. 351: 266-79. PMID 16005888 DOI: 10.1016/J.Jmb.2005.06.022 |
0.399 |
|
| 2005 |
Breci L, Hattrup E, Keeler M, Letarte J, Johnson R, Haynes PA. Comprehensive proteomics in yeast using chromatographic fractionation, gas phase fractionation, protein gel electrophoresis, and isoelectric focusing Proteomics. 5: 2018-2028. PMID 15852344 DOI: 10.1002/Pmic.200401103 |
0.423 |
|
| 2004 |
Cumming RC, Andon NL, Haynes PA, Park M, Fischer WH, Schubert D. Protein disulfide bond formation in the cytoplasm during oxidative stress. The Journal of Biological Chemistry. 279: 21749-58. PMID 15031298 DOI: 10.1074/Jbc.M312267200 |
0.35 |
|
| 2003 |
Zhong J, Haynes PA, Zhang S, Yang X, Andon NL, Eckert D, Yates JR, Wang X, Budworth P. Development of a system for the study of protein-protein interactions in planta: characterization of a TATA-box binding protein complex in Oryza sativa. Journal of Proteome Research. 2: 514-22. PMID 14582648 DOI: 10.1021/Pr034023Z |
0.434 |
|
| 2003 |
Andon NL, Eckert D, Yates JR, Haynes PA. High-throughput functional affinity purification of mannose binding proteins from Oryza sativa. Proteomics. 3: 1270-8. PMID 12872227 DOI: 10.1093/Glycob/Cwg130 |
0.473 |
|
| 2003 |
Cooper B, Eckert D, Andon NL, Yates JR, Haynes PA. Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry. Journal of the American Society For Mass Spectrometry. 14: 736-41. PMID 12837595 DOI: 10.1016/S1044-0305(03)00125-9 |
0.399 |
|
| 2003 |
Panigrahi AK, Allen TE, Stuart K, Haynes PA, Gygi SP. Mass spectrometric analysis of the editosome and other multiprotein complexes in Trypanosoma brucei. Journal of the American Society For Mass Spectrometry. 14: 728-35. PMID 12837594 DOI: 10.1016/S1044-0305(03)00126-0 |
0.535 |
|
| 2003 |
Yamaguchi K, Beligni MV, Prieto S, Haynes PA, McDonald WH, Yates JR, Mayfield SP. Proteomic characterization of the Chlamydomonas reinhardtii chloroplast ribosome. Identification of proteins unique to th e70 S ribosome. The Journal of Biological Chemistry. 278: 33774-85. PMID 12826678 DOI: 10.1074/Jbc.M301934200 |
0.39 |
|
| 2002 |
Andon NL, Hollingworth S, Koller A, Greenland AJ, Yates JR, Haynes PA. Proteomic characterization of wheat amyloplasts using identification of proteins by tandem mass spectrometry. Proteomics. 2: 1156-68. PMID 12362334 DOI: 10.1002/1615-9861(200209)2:9<1156::Aid-Prot1156>3.0.Co;2-4 |
0.467 |
|
| 2002 |
Koller A, Washburn MP, Lange BM, Andon NL, Deciu C, Haynes PA, Hays L, Schieltz D, Ulaszek R, Wei J, Wolters D, Yates JR. Proteomic survey of metabolic pathways in rice Proceedings of the National Academy of Sciences of the United States of America. 99: 11969-11974. PMID 12163647 DOI: 10.1073/Pnas.172183199 |
0.411 |
|
| 2001 |
Steitz SA, Speer MY, Curinga G, Yang HY, Haynes P, Aebersold R, Schinke T, Karsenty G, Giachelli CM. Smooth muscle cell phenotypic transition associated with calcification: Upregulation of Cbfa1 and downregulation of smooth muscle lineage markers Circulation Research. 89: 1147-1154. PMID 11739279 DOI: 10.1161/Hh2401.101070 |
0.419 |
|
| 2000 |
Haynes PA, Aebersold R. Simultaneous detection and identification of O-GlcNAc-modified glycoproteins using liquid chromatography-tandem mass spectrometry. Analytical Chemistry. 72: 5402-10. PMID 11080893 DOI: 10.1021/Ac000512W |
0.459 |
|
| 2000 |
Haynes PA, Yates JR. Proteome profiling-pitfalls and progress. Yeast (Chichester, England). 17: 81-7. PMID 10900454 DOI: 10.1002/1097-0061(20000630)17:2<81::Aid-Yea22>3.0.Co;2-Z |
0.331 |
|
| 2000 |
Haynes PA, Goodlett DR, Gygi SP, Watts JD, Figeys D, Aebersold R. Towards an Integrated Analytical Technology for the Generation of Multidimensional Protein Expression Maps Journal of Protein Chemistry. 17: 143-162. DOI: 10.1007/978-1-59259-719-2_9 |
0.689 |
|
| 1999 |
Eberini I, Miller I, Gemeiner M, Haynes P, Aebersold R, Puglisi L, Sirtori CR, Gianazza E. A web site for the rat serum protein study group. Electrophoresis. 20: 3599-602. PMID 10612286 DOI: 10.1002/(Sici)1522-2683(19991201)20:18<3599::Aid-Elps3599>3.0.Co;2-K |
0.48 |
|
| 1999 |
Miller I, Haynes P, Eberini I, Gemeiner M, Aebersold R, Gianazza E. Proteins of rat serum: III. Gender-related differences in protein concentration under baseline conditions and upon experimental inflammation as evaluated by two-dimensional electrophoresis. Electrophoresis. 20: 836-45. PMID 10344256 DOI: 10.1002/(Sici)1522-2683(19990101)20:4/5<836::Aid-Elps836>3.0.Co;2-6 |
0.473 |
|
| 1998 |
Ducret A, Bartone N, Haynes PA, Blanchard A, Aebersold R. A simplified gradient solvent delivery system for capillary liquid chromatography-electrospray ionization mass spectrometry. Analytical Biochemistry. 265: 129-38. PMID 9866717 DOI: 10.1006/Abio.1998.2873 |
0.466 |
|
| 1998 |
Haynes PA, Gygi SP, Figeys D, Aebersold R. Proteome analysis: biological assay or data archive? Electrophoresis. 19: 1862-71. PMID 9740046 DOI: 10.1002/Elps.1150191104 |
0.709 |
|
| 1998 |
Miller I, Haynes P, Gemeiner M, Aebersold R, Manzoni C, Lovati MR, Vignati M, Eberini I, Gianazza E. Proteins of rat serum: II. Influence of some biological parameters of the two-dimensional electrophoresis pattern. Electrophoresis. 19: 1493-500. PMID 9694301 DOI: 10.1002/Elps.1150190846 |
0.508 |
|
| 1998 |
Haynes P, Miller I, Aebersold R, Gemeiner M, Eberini I, Lovati MR, Manzoni C, Vignati M, Gianazza E. Proteins of rat serum: I. Establishing a reference two-dimensional electrophoresis map by immunodetection and microbore high performance liquid chromatography-electrospray mass spectrometry. Electrophoresis. 19: 1484-92. PMID 9694300 DOI: 10.1002/Elps.1150190845 |
0.54 |
|
| 1998 |
Haynes PA, Fripp N, Aebersold R. Identification of gel-separated proteins by liquid chromatography-electrospray tandem mass spectrometry: comparison of methods and their limitations. Electrophoresis. 19: 939-45. PMID 9638940 DOI: 10.1002/Elps.1150190609 |
0.524 |
|
| 1998 |
Haynes PA. Phosphoglycosylation: A new structural class of glycosylation? Glycobiology. 8: 1-5. PMID 9451009 DOI: 10.1093/Glycob/8.1.1 |
0.316 |
|
| 1993 |
Haynes PA, Gooley AA, Ferguson MA, Redmond JW, Williams KL. Post-translational modifications of the Dictyostelium discoideum glycoprotein PsA. Glycosylphosphatidylinositol membrane anchor and composition of O-linked oligosaccharides. European Journal of Biochemistry. 216: 729-37. PMID 8404891 DOI: 10.1111/J.1432-1033.1993.Tb18192.X |
0.669 |
|
| 1992 |
Haynes PA, Batley M, Peach RJ, Brennan SO, Redmond JW. Characterisation of oligosaccharides from a glycoprotein variant of human serum albumin (albumin Casebrook) using high-performance anion-exchange chromatography and nuclear magnetic resonance spectroscopy. Journal of Chromatography. 581: 187-93. PMID 1452609 DOI: 10.1016/0378-4347(92)80271-Q |
0.592 |
|
| 1991 |
Haynes PA, Sheumack D, Kibby J, Redmond JW. Amino acid analysis using derivatisation with 9-fluorenylmethyl chloroformate and reversed-phase high-performance liquid chromatography. Journal of Chromatography. 540: 177-85. PMID 8786243 DOI: 10.1016/S0021-9673(01)88807-5 |
0.626 |
|
| 1991 |
Haynes PA, Sheumack D, Greig LG, Kibby J, Redmond JW. Applications of automated amino acid analysis using 9-fluorenylmethyl chloroformate. Journal of Chromatography. 588: 107-14. PMID 1687819 DOI: 10.1016/0021-9673(91)85012-5 |
0.618 |
|
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