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Zhenjun Hu - Publications

Affiliations: 
2001-2020 Bioinformatics Boston University, Boston, MA 
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32 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Kishore D, Birzu G, Hu Z, DeLisi C, Korolev KS, Segrè D. Inferring microbial co-occurrence networks from amplicon data: a systematic evaluation. Msystems. e0096122. PMID 37338270 DOI: 10.1128/msystems.00961-22  0.568
2016 Chen HR, Sherr DH, Hu Z, DeLisi C. A network based approach to drug repositioning identifies plausible candidates for breast cancer and prostate cancer. Bmc Medical Genomics. 9: 51. PMID 27475327 DOI: 10.1186/S12920-016-0212-7  0.533
2016 Granger BR, Chang YC, Wang Y, DeLisi C, Segrè D, Hu Z. Visualization of Metabolic Interaction Networks in Microbial Communities Using VisANT 5.0. Plos Computational Biology. 12: e1004875. PMID 27081850 DOI: 10.1371/Journal.Pcbi.1004875  0.586
2015 Chang YC, Hu Z, Rachlin J, Anton BP, Kasif S, Roberts RJ, Steffen M. COMBREX-DB: an experiment centered database of protein function: knowledge, predictions and knowledge gaps. Nucleic Acids Research. PMID 26635392 DOI: 10.1093/Nar/Gkv1324  0.339
2015 Liu Y, Hu Z, DeLisi C. Mutated pathways as a guide to adjuvant therapy treatments for breast cancer. Molecular Cancer Therapeutics. PMID 26625895 DOI: 10.1158/1535-7163.Mct-15-0601  0.519
2015 Liu Y, Tian F, Hu Z, DeLisi C. Evaluation and integration of cancer gene classifiers: identification and ranking of plausible drivers. Scientific Reports. 5: 10204. PMID 25961669 DOI: 10.1038/Srep10204  0.559
2015 Liu Y, Tian F, Hu Z, Delisi C. Evaluation and integration of cancer gene classifiers: Identification and ranking of plausible drivers Scientific Reports. 5. DOI: 10.1038/srep10204  0.522
2014 Hu Z. Using VisANT to Analyze Networks. Current Protocols in Bioinformatics. 45: 8.8.1-39. PMID 25422679 DOI: 10.1002/0471250953.Bi0808S45  0.477
2014 Tian F, Wang Y, Seiler M, Hu Z. Functional characterization of breast cancer using pathway profiles. Bmc Medical Genomics. 7: 45. PMID 25041817 DOI: 10.1186/1755-8794-7-45  0.417
2014 Hu Z. Using VisANT to analyze networks Current Protocols in Bioinformatics. DOI: 10.1002/0471250953.bi0808s45  0.381
2013 Anton BP, Chang YC, Brown P, Choi HP, Faller LL, Guleria J, Hu Z, Klitgord N, Levy-Moonshine A, Maksad A, Mazumdar V, McGettrick M, Osmani L, Pokrzywa R, Rachlin J, et al. The COMBREX project: design, methodology, and initial results. Plos Biology. 11: e1001638. PMID 24013487 DOI: 10.1371/Journal.Pbio.1001638  0.538
2013 Hu Z, Chang YC, Wang Y, Huang CL, Liu Y, Tian F, Granger B, Delisi C. VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Research. 41: W225-31. PMID 23716640 DOI: 10.1093/Nar/Gkt401  0.593
2013 Hu Z. Analysis strategy of protein-protein interaction networks Methods in Molecular Biology. 939: 141-181. PMID 23192546 DOI: 10.1007/978-1-62703-107-3_11  0.391
2012 Shigemizu D, Hu Z, Hung JH, Huang CL, Wang Y, DeLisi C. Using functional signatures to identify repositioned drugs for breast, myelogenous leukemia and prostate cancer. Plos Computational Biology. 8: e1002347. PMID 22346740 DOI: 10.1371/Journal.Pcbi.1002347  0.562
2012 Hung JH, Yang TH, Hu Z, Weng Z, DeLisi C. Gene set enrichment analysis: performance evaluation and usage guidelines. Briefings in Bioinformatics. 13: 281-91. PMID 21900207 DOI: 10.1093/Bib/Bbr049  0.581
2012 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, et al. The BioPAX community standard for pathway data sharing (Nature Biotechnology (2010) 28, (935-942)) Nature Biotechnology. 30: 365. DOI: 10.1038/Nbt0412-365C  0.305
2011 Roberts RJ, Chang YC, Hu Z, Rachlin JN, Anton BP, Pokrzywa RM, Choi HP, Faller LL, Guleria J, Housman G, Klitgord N, Mazumdar V, McGettrick MG, Osmani L, Swaminathan R, et al. COMBREX: a project to accelerate the functional annotation of prokaryotic genomes. Nucleic Acids Research. 39: D11-4. PMID 21097892 DOI: 10.1093/Nar/Gkq1168  0.529
2010 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, et al. The BioPAX community standard for pathway data sharing. Nature Biotechnology. 28: 935-42. PMID 20829833 DOI: 10.1038/Nbt.1666  0.428
2010 Hung JH, Whitfield TW, Yang TH, Hu Z, Weng Z, DeLisi C. Identification of functional modules that correlate with phenotypic difference: the influence of network topology. Genome Biology. 11: R23. PMID 20187943 DOI: 10.1186/Gb-2010-11-2-R23  0.62
2010 Demir E, Cary MP, Paley S, Fukuda K, Lemer C, Vastrik I, Wu G, D'Eustachio P, Schaefer C, Luciano J, Schacherer F, Martinez-Flores I, Hu Z, Jimenez-Jacinto V, Joshi-Tope G, et al. Erratum: Corrigendum: The BioPAX community standard for pathway data sharing Nature Biotechnology. 28: 1308-1308. DOI: 10.1038/Nbt1210-1308C  0.302
2009 Linghu B, Snitkin ES, Hu Z, Xia Y, Delisi C. Genome-wide prioritization of disease genes and identification of disease-disease associations from an integrated human functional linkage network. Genome Biology. 10: R91. PMID 19728866 DOI: 10.1186/Gb-2009-10-9-R91  0.569
2009 Hu Z, Hung JH, Wang Y, Chang YC, Huang CL, Huyck M, Delisi C. VisANT 3.5: Multi-scale network visualization, analysis and inference based on the gene ontology Nucleic Acids Research. 37. PMID 19465394 DOI: 10.1093/Nar/Gkp406  0.651
2008 Hu Z, Snitkin ES, DeLisi C. VisANT: an integrative framework for networks in systems biology. Briefings in Bioinformatics. 9: 317-25. PMID 18463131 DOI: 10.1093/Bib/Bbn020  0.6
2007 Hu Z, Ng DM, Yamada T, Chen C, Kawashima S, Mellor J, Linghu B, Kanehisa M, Stuart JM, DeLisi C. VisANT 3.0: new modules for pathway visualization, editing, prediction and construction. Nucleic Acids Research. 35: W625-32. PMID 17586824 DOI: 10.1093/Nar/Gkm295  0.602
2007 Hu Z, Mellor J, Wu J, Kanehisa M, Stuart JM, DeLisi C. Towards zoomable multidimensional maps of the cell. Nature Biotechnology. 25: 547-54. PMID 17483841 DOI: 10.1038/Nbt1304  0.624
2006 Wu J, Hu Z, DeLisi C. Gene annotation and network inference by phylogenetic profiling. Bmc Bioinformatics. 7: 80. PMID 16503966 DOI: 10.1186/1471-2105-7-80  0.606
2005 Niu T, Hu Z. Dynamic visual data mining: biological sequence analysis and annotation using SeqVISTA. International Journal of Bioinformatics Research and Applications. 1: 18-30. PMID 18048119 DOI: 10.1504/Ijbra.2005.006900  0.388
2005 Hu Z, Mellor J, Wu J, Yamada T, Holloway D, Delisi C. VisANT: data-integrating visual framework for biological networks and modules. Nucleic Acids Research. 33: W352-7. PMID 15980487 DOI: 10.1093/Nar/Gki431  0.632
2004 Hu Z, Mellor J, DeLisi C. Analyzing networks with VisANT. Current Protocols in Bioinformatics / Editoral Board, Andreas D. Baxevanis ... [Et Al.]. Unit 8.8. PMID 18428738 DOI: 10.1002/0471250953.Bi0808S08  0.613
2004 Hu Z, Fu Y, Halees AS, Kielbasa SM, Weng Z. SeqVISTA: a new module of integrated computational tools for studying transcriptional regulation. Nucleic Acids Research. 32: W235-41. PMID 15215387 DOI: 10.1093/Nar/Gkh483  0.374
2004 Hu Z, Mellor J, Wu J, DeLisi C. VisANT: an online visualization and analysis tool for biological interaction data. Bmc Bioinformatics. 5: 17. PMID 15028117 DOI: 10.1186/1471-2105-5-17  0.619
2003 Hu Z, Frith M, Niu T, Weng Z. SeqVISTA: a graphical tool for sequence feature visualization and comparison. Bmc Bioinformatics. 4: 1. PMID 12513700 DOI: 10.1186/1471-2105-4-1  0.306
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