Michal Dabrowski - Publications

Affiliations: 
Nencki Institute, Warsaw, Poland 
Area:
Bioinformatics of regulation of gene expression

51 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Kaminska P, Ovesen PL, Jakiel M, Obrebski T, Schmidt V, Draminski M, Bilska AG, Bieniek M, Anink J, Paterczyk B, Jensen AMG, Piatek S, Andersen OM, Aronica E, Willnow TE, ... ... Dabrowski MJ, et al. SorLA restricts TNFα release from microglia to shape a glioma-supportive brain microenvironment. Embo Reports. PMID 38499808 DOI: 10.1038/s44319-024-00117-6  0.55
2023 Roura AJ, Szadkowska P, Poleszak K, Dabrowski MJ, Ellert-Miklaszewska A, Wojnicki K, Ciechomska IA, Stepniak K, Kaminska B, Wojtas B. Regulatory networks driving expression of genes critical for glioblastoma are controlled by the transcription factor c-Jun and the pre-existing epigenetic modifications. Clinical Epigenetics. 15: 29. PMID 36850002 DOI: 10.1186/s13148-023-01446-4  0.544
2022 Cabaj A, Moszyńska A, Charzyńska A, Bartoszewski R, Dąbrowski M. Functional and HRE motifs count analysis of induction of selected hypoxia-responsive genes by HIF-1 and HIF-2 in human umbilical endothelial cells. Cellular Signalling. 90: 110209. PMID 34890779 DOI: 10.1016/j.cellsig.2021.110209  0.323
2021 Stępniak K, Machnicka MA, Mieczkowski J, Macioszek A, Wojtaś B, Gielniewski B, Poleszak K, Perycz M, Król SK, Guzik R, Dąbrowski MJ, Dramiński M, Jardanowska M, Grabowicz I, Dziedzic A, et al. Author Correction: Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas. Nature Communications. 12: 7218. PMID 34873182 DOI: 10.1038/s41467-021-27448-5  0.42
2021 Grabowicz IE, Wilczyński B, Kamińska B, Roura AJ, Wojtaś B, Dąbrowski MJ. Author Correction: The role of epigenetic modifications, long-range contacts, enhancers and topologically associating domains in the regulation of glioma grade-specific genes. Scientific Reports. 11: 19628. PMID 34584207 DOI: 10.1038/s41598-021-99319-4  0.501
2021 Kotarba G, Taracha-Wisniewska A, Miller M, Dabrowski M, Wilanowski T. Transcription factors Krüppel-like factor 4 and paired box 5 regulate the expression of the Grainyhead-like genes. Plos One. 16: e0257977. PMID 34570823 DOI: 10.1371/journal.pone.0257977  0.402
2021 Grabowicz IE, Wilczyński B, Kamińska B, Roura AJ, Wojtaś B, Dąbrowski MJ. The role of epigenetic modifications, long-range contacts, enhancers and topologically associating domains in the regulation of glioma grade-specific genes. Scientific Reports. 11: 15668. PMID 34341417 DOI: 10.1038/s41598-021-95009-3  0.574
2021 Stępniak K, Machnicka MA, Mieczkowski J, Macioszek A, Wojtaś B, Gielniewski B, Poleszak K, Perycz M, Król SK, Guzik R, Dąbrowski MJ, Dramiński M, Jardanowska M, Grabowicz I, Dziedzic A, et al. Mapping chromatin accessibility and active regulatory elements reveals pathological mechanisms in human gliomas. Nature Communications. 12: 3621. PMID 34131149 DOI: 10.1038/s41467-021-23922-2  0.542
2020 Maleszewska M, Steranka A, Smiech M, Kaza B, Pilanc P, Dabrowski M, Kaminska B. Sequential changes in histone modifications shape transcriptional responses underlying microglia polarization by glioma. Glia. PMID 32710676 DOI: 10.1002/glia.23887  0.598
2020 Lipiec MA, Bem J, Koziński K, Chakraborty C, Urban-Ciećko J, Zajkowski T, Dąbrowski M, Szewczyk ŁM, Toval A, Ferran JL, Nagalski A, Wiśniewska MB. TCF7L2 regulates postmitotic differentiation programs and excitability patterns in the thalamus. Development (Cambridge, England). PMID 32675279 DOI: 10.1242/Dev.190181  0.322
2019 Bojko A, Czarnecka-Herok J, Charzynska A, Dabrowski M, Sikora E. Diversity of the Senescence Phenotype of Cancer Cells Treated with Chemotherapeutic Agents. Cells. 8. PMID 31771226 DOI: 10.3390/cells8121501  0.305
2019 Mathiyalagan N, Miles LB, Anderson PJ, Wilanowski T, Grills BL, McDonald SJ, Keightley MC, Charzynska A, Dabrowski M, Dworkin S. Meta-Analysis of Dependent Transcriptional Networks: A Roadmap for Identifying Novel Conserved Genetic Pathways. Genes. 10. PMID 31683705 DOI: 10.3390/genes10110876  0.432
2019 Przanowski P, Mondal SS, Cabaj A, Dębski KJ, Wojtas B, Gielniewski B, Kaza B, Kaminska B, Dabrowski M. Open chromatin landscape of rat microglia upon proinvasive or inflammatory polarization. Glia. PMID 31339627 DOI: 10.1002/glia.23686  0.605
2019 Kulesza DW, Ramji K, Maleszewska M, Mieczkowski J, Dabrowski M, Chouaib S, Kaminska B. Search for novel STAT3-dependent genes reveals SERPINA3 as a new STAT3 target that regulates invasion of human melanoma cells. Laboratory Investigation; a Journal of Technical Methods and Pathology. PMID 31278347 DOI: 10.1038/S41374-019-0288-8  0.587
2018 Dabrowski MJ, Draminski M, Diamanti K, Stepniak K, Mozolewska MA, Teisseyre P, Koronacki J, Komorowski J, Kaminska B, Wojtas B. Unveiling new interdependencies between significant DNA methylation sites, gene expression profiles and glioma patients survival. Scientific Reports. 8: 4390. PMID 29535343 DOI: 10.1038/s41598-018-22829-1  0.447
2018 Kaminska B, Maleszewska M, Steranka A, Smiech M, Kaza B, Pilanc P, Dabrowski M. TMIC-27. GLIOMA CELLS INDUCE ‘EPIGENETIC MEMORY’ IN MICROGLIA AND BLOCK INFLAMMATORY GENE EXPRESSION- IN VITRO AND IN VIVO FINDINGS Neuro-Oncology. 20: vi262-vi262. DOI: 10.1093/neuonc/noy148.1086  0.621
2017 Gieryng A, Pszczolkowska D, Bocian K, Dabrowski M, Rajan WD, Kloss M, Mieczkowski J, Kaminska B. Immune microenvironment of experimental rat C6 gliomas resembles human glioblastomas. Scientific Reports. 7: 17556. PMID 29242629 DOI: 10.1038/S41598-017-17752-W  0.529
2017 Przanowski P, Loska S, Cysewski D, Dabrowski M, Kaminska B. ISG'ylation increases stability of numerous proteins including Stat1, which prevents premature termination of immune response in LPS-stimulated microglia. Neurochemistry International. PMID 28774718 DOI: 10.1016/j.neuint.2017.07.013  0.524
2016 Kijewska M, Kocyk M, Kloss M, Stepniak K, Korwek Z, Polakowska R, Dabrowski M, Gieryng A, Wojtas B, Ciechomska IA, Kaminska B. The embryonic type of SPP1 transcriptional regulation is re-activated in glioblastoma. Oncotarget. PMID 28030801 DOI: 10.18632/oncotarget.14092  0.559
2016 Torabi Moghadam B, Dabrowski M, Kaminska B, Grabherr MG, Komorowski J. Combinatorial identification of DNA methylation patterns over age in the human brain. Bmc Bioinformatics. 17: 393. PMID 27663458 DOI: 10.1186/s12859-016-1259-3  0.515
2016 Khan MI, Dębski KJ, Dabrowski M, Czarnecka AM, Szczylik C. Gene Set Enrichment Analysis and Ingenuity Pathway Analysis of Metastatic Clear Cell Renal Cell Carcinoma Cell Line. American Journal of Physiology. Renal Physiology. ajprenal.00138.2016. PMID 27279483 DOI: 10.1152/ajprenal.00138.2016  0.415
2016 Ellert-Miklaszewska A, Wisniewski P, Kijewska M, Gajdanowicz P, Pszczolkowska D, Przanowski P, Dabrowski M, Maleszewska M, Kaminska B. Tumour-processed osteopontin and lactadherin drive the protumorigenic reprogramming of microglia and glioma progression. Oncogene. 35: 6366-6377. PMID 27041573 DOI: 10.1038/Onc.2016.55  0.461
2016 Gieryng A, Pszczolkowska D, Dabrowski M, Kaminska B. Knockdown of osteopontin (SPP1) in glioma cells blocks protumorigenic activation of infiltrating myeloid cells and restores activation of cytotoxic T cells European Journal of Cancer. 61: S215. DOI: 10.1016/S0959-8049(16)61757-4  0.425
2015 Nagalski A, Puelles L, Dabrowski M, Wegierski T, Kuznicki J, Wisniewska MB. Molecular anatomy of the thalamic complex and the underlying transcription factors. Brain Structure & Function. PMID 25963709 DOI: 10.1007/s00429-015-1052-5  0.355
2015 Dabrowski M, Dojer N, Krystkowiak I, Kaminska B, Wilczynski B. Optimally choosing PWM motif databases and sequence scanning approaches based on ChIP-seq data. Bmc Bioinformatics. 16: 140. PMID 25927199 DOI: 10.1186/S12859-015-0573-5  0.48
2015 Kuzniewska B, Nader K, Dabrowski M, Kaczmarek L, Kalita K. Adult Deletion of SRF Increases Epileptogenesis and Decreases Activity-Induced Gene Expression. Molecular Neurobiology. PMID 25636686 DOI: 10.1007/s12035-014-9089-7  0.735
2014 Kruczyk M, Przanowski P, Dabrowski M, Swiatek-Machado K, Mieczkowski J, Wallerman O, Ronowicz A, Piotrowski A, Wadelius C, Kaminska B, Komorowski J. Integration of genome-wide of Stat3 binding and epigenetic modification mapping with transcriptome reveals novel Stat3 target genes in glioma cells. Biochimica Et Biophysica Acta. 1839: 1341-50. PMID 25111868 DOI: 10.1016/J.Bbagrm.2014.07.010  0.607
2014 Przanowski P, Dabrowski M, Ellert-Miklaszewska A, Kloss M, Mieczkowski J, Kaza B, Ronowicz A, Hu F, Piotrowski A, Kettenmann H, Komorowski J, Kaminska B. The signal transducers Stat1 and Stat3 and their novel target Jmjd3 drive the expression of inflammatory genes in microglia. Journal of Molecular Medicine (Berlin, Germany). 92: 239-54. PMID 24097101 DOI: 10.1007/S00109-013-1090-5  0.63
2013 Krystkowiak I, Lenart J, Debski K, Kuterba P, Petas M, Kaminska B, Dabrowski M. Nencki Genomics Database--Ensembl funcgen enhanced with intersections, user data and genome-wide TFBS motifs. Database : the Journal of Biological Databases and Curation. 2013: bat069. PMID 24089456 DOI: 10.1093/database/bat069  0.497
2013 Ellert-Miklaszewska A, Dabrowski M, Lipko M, Sliwa M, Maleszewska M, Kaminska B. Molecular definition of the pro-tumorigenic phenotype of glioma-activated microglia. Glia. 61: 1178-90. PMID 23650109 DOI: 10.1002/glia.22510  0.577
2013 Walczak A, Szczepankiewicz AA, Ruszczycki B, Magalska A, Zamlynska K, Dzwonek J, Wilczek E, Zybura-Broda K, Rylski M, Malinowska M, Dabrowski M, Szczepinska T, Pawlowski K, Pyskaty M, Wlodarczyk J, et al. Novel higher-order epigenetic regulation of the Bdnf gene upon seizures. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 2507-11. PMID 23392678 DOI: 10.1523/Jneurosci.1085-12.2013  0.705
2012 Wisniewska MB, Nagalski A, Dabrowski M, Misztal K, Kuznicki J. Novel β-catenin target genes identified in thalamic neurons encode modulators of neuronal excitability. Bmc Genomics. 13: 635. PMID 23157480 DOI: 10.1186/1471-2164-13-635  0.52
2012 Zawadzka M, Dabrowski M, Gozdz A, Szadujkis B, Sliwa M, Lipko M, Kaminska B. Early steps of microglial activation are directly affected by neuroprotectant FK506 in both in vitro inflammation and in rat model of stroke. Journal of Molecular Medicine (Berlin, Germany). 90: 1459-71. PMID 22806180 DOI: 10.1007/s00109-012-0925-9  0.588
2012 Kaminska B, Ellert-Miklaszewska A, Wisniewski P, Kijewska M, Dabrowski M, Gabrusiewicz K, Lipko M. 44 Proffered Paper: Osteopontin and Lactadherin Drive Pro-invasive Activation of Infiltrating Macrophages and Contribute to Glioma Progression European Journal of Cancer. 48: S10. DOI: 10.1016/S0959-8049(12)70748-7  0.42
2011 Adach-Kilon A, Swiatek-Machado K, Kaminska B, Dabrowski M. Signal transducer and activator of transcription 1 (Stat1) maintains basal mRNA expression of pro-survival stat3-target genes in glioma C6 cells. Journal of Cellular Biochemistry. 112: 3685-94. PMID 21815198 DOI: 10.1002/jcb.23305  0.591
2011 Swiatek-Machado KE, Dabrowski M, Mieczkowski J, Przanowski P, Adach-Kilon A, Kaminska B. Abstract C100: Towards better understanding a role of STAT3 in glioma pathology: Identification of novel transcriptional targets of STAT3. Molecular Cancer Therapeutics. 10. DOI: 10.1158/1535-7163.Targ-11-C100  0.623
2010 Dabrowski M, Dojer N, Zawadzka M, Mieczkowski J, Kaminska B. Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems. Bmc Systems Biology. 4: 86. PMID 20565733 DOI: 10.1186/1752-0509-4-86  0.641
2010 Wisniewska MB, Misztal K, Michowski W, Szczot M, Purta E, Lesniak W, Klejman ME, Dabrowski M, Filipkowski RK, Nagalski A, Mozrzymas JW, Kuznicki J. LEF1/beta-catenin complex regulates transcription of the Cav3.1 calcium channel gene (Cacna1g) in thalamic neurons of the adult brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 30: 4957-69. PMID 20371816 DOI: 10.1523/Jneurosci.1425-09.2010  0.678
2010 Szydlowska K, Gozdz A, Dabrowski M, Zawadzka M, Kaminska B. Prolonged activation of ERK triggers glutamate-induced apoptosis of astrocytes: neuroprotective effect of FK506. Journal of Neurochemistry. 113: 904-18. PMID 20202085 DOI: 10.1111/j.1471-4159.2010.06656.x  0.561
2010 Mieczkowski J, Tyburczy ME, Dabrowski M, Pokarowski P. Probe set filtering increases correlation between Affymetrix GeneChip and qRT-PCR expression measurements. Bmc Bioinformatics. 11: 104. PMID 20181266 DOI: 10.1186/1471-2105-11-104  0.32
2010 Larson KC, Lipko M, Dabrowski M, Draper MP. Gng12 is a novel negative regulator of LPS-induced inflammation in the microglial cell line BV-2. Inflammation Research : Official Journal of the European Histamine Research Society ... [Et Al.]. 59: 15-22. PMID 19568691 DOI: 10.1007/s00011-009-0062-2  0.363
2009 Majak K, Dabrowski M, Pitkänen A. Epileptogenesis alters gene expression pattern in rats subjected to amygdala-dependent emotional learning. Neuroscience. 159: 468-82. PMID 19166914 DOI: 10.1016/j.neuroscience.2008.12.060  0.367
2006 Lukasiuk K, Dabrowski M, Adach A, Pitkänen A. Epileptogenesis-related genes revisited. Progress in Brain Research. 158: 223-41. PMID 17027699 DOI: 10.1016/S0079-6123(06)58011-2  0.738
2006 Dabrowski M, Aerts S, Kaminska B. Prediction of a key role of motifs binding E2F and NR2F in down-regulation of numerous genes during the development of the mouse hippocampus. Bmc Bioinformatics. 7: 367. PMID 16884529 DOI: 10.1186/1471-2105-7-367  0.632
2006 Dabrowski M, Adach A, Aerts S, Moreau Y, Kaminska B. Identification of conserved modes of expression profiles during hippocampal development and neuronal differentiation in vitro. Journal of Neurochemistry. 97: 87-91. PMID 16635255 DOI: 10.1111/J.1471-4159.2005.03537.X  0.595
2004 Hébert SS, Serneels L, Dejaegere T, Horré K, Dabrowski M, Baert V, Annaert W, Hartmann D, De Strooper B. Coordinated and widespread expression of gamma-secretase in vivo: evidence for size and molecular heterogeneity. Neurobiology of Disease. 17: 260-72. PMID 15474363 DOI: 10.1016/J.Nbd.2004.08.002  0.31
2004 Aerts S, Thijs G, Dabrowski M, Moreau Y, De Moor B. Comprehensive analysis of the base composition around the transcription start site in Metazoa. Bmc Genomics. 5: 34. PMID 15171795 DOI: 10.1186/1471-2164-5-34  0.407
2003 Dabrowski M, Aerts S, Van Hummelen P, Craessaerts K, De Moor B, Annaert W, Moreau Y, De Strooper B. Gene profiling of hippocampal neuronal culture. Journal of Neurochemistry. 85: 1279-88. PMID 12753086 DOI: 10.1046/J.1471-4159.2003.01753.X  0.536
1998 Dabrowski M, Robinson E, Hughes SV, Bland R, Hewison M. Differential RNA display identifies novel genes associated with decreased vitamin D receptor expression. Molecular and Cellular Endocrinology. 142: 131-9. PMID 9783909 DOI: 10.1016/S0303-7207(98)00111-7  0.429
1997 Kaminska B, Filipkowski RK, Biedermann IW, Konopka D, Nowicka D, Hetman M, Dabrowski M, Gorecki DC, Lukasiuk K, Szklarczyk AW, Kaczmarek L. Kainate-evoked modulation of gene expression in rat brain. Acta Biochimica Polonica. 44: 781-9. PMID 9584860 DOI: 10.18388/Abp.1997_4382  0.636
1995 Dabrowski M. [Looking for a needle in a haystack. Identification of differentially expressed genes]. Postepy Biochemii. 41: 110-5. PMID 7479438  0.37
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