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Bikash R Sahoo - Publications

Affiliations: 
Chemistry and Biophysics University of Michigan, Ann Arbor, Ann Arbor, MI 
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41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Sahoo BR, Ramamoorthy A. Direct interaction between the transmembrane helices stabilize cytochrome P450 2B4 and cytochrome b5 redox complex. Biophysical Chemistry. 301: 107092. PMID 37586236 DOI: 10.1016/j.bpc.2023.107092  0.478
2022 Chakravorty A, McCalpin SD, Sahoo BR, Ramamoorthy A, Brooks CL. Free Gangliosides Can Alter Amyloid-β Aggregation. The Journal of Physical Chemistry Letters. 9303-9308. PMID 36174129 DOI: 10.1021/acs.jpclett.2c02362  0.567
2022 Sahoo BR, Bardwell JCA. SERF, a family of tiny highly conserved, highly charged proteins with enigmatic functions. The Febs Journal. PMID 35694898 DOI: 10.1111/febs.16555  0.301
2021 Sahoo BR, Souders Ii CL, Nakayama TW, Deng Z, Linton H, Suladze S, Ivanova MI, Reif B, Ando T, Martyniuk CJ, Ramamoorthy A. Conformational Tuning of Amylin by Charged Styrene-maleic-acid Copolymers. Journal of Molecular Biology. 167385. PMID 34883118 DOI: 10.1016/j.jmb.2021.167385  0.525
2021 Khemtemourian L, Antoniciello F, Sahoo BR, Decossas M, Lecomte S, Ramamoorthy A. Investigation of the effects of two major secretory granules components, insulin and zinc, on human-IAPP amyloid aggregation and membrane damage. Chemistry and Physics of Lipids. 105083. PMID 33887213 DOI: 10.1016/j.chemphyslip.2021.105083  0.525
2021 Sahoo BR, Kumar Panda P, Liang W, Tang WJ, Ahuja R, Ramamoorthy A. Degradation of Alzheimer's amyloid-β by a catalytically inactive insulin-degrading enzyme. Journal of Molecular Biology. 166993. PMID 33865867 DOI: 10.1016/j.jmb.2021.166993  0.495
2021 Nguyen PH, Ramamoorthy A, Sahoo BR, Zheng J, Faller P, Straub JE, Dominguez L, Shea JE, Dokholyan NV, De Simone A, Ma B, Nussinov R, Najafi S, Ngo ST, Loquet A, et al. Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis. Chemical Reviews. PMID 33543942 DOI: 10.1021/acs.chemrev.0c01122  0.455
2020 Sciacca MF, Lolicato F, Tempra C, Scollo F, Sahoo BR, Watson MD, García-Viñuales S, Milardi D, Raudino A, Lee JC, Ramamoorthy A, La Rosa C. Lipid-Chaperone Hypothesis: A Common Molecular Mechanism of Membrane Disruption by Intrinsically Disordered Proteins. Acs Chemical Neuroscience. PMID 33269918 DOI: 10.1021/acschemneuro.0c00588  0.545
2020 Ravula T, Sahoo BR, Dai X, Ramamoorthy A. Natural-abundance O NMR spectroscopy of magnetically aligned lipid nanodiscs. Chemical Communications (Cambridge, England). PMID 32724998 DOI: 10.1039/D0Cc04011H  0.697
2020 Bharadwaj P, Solomon T, Sahoo BR, Ignasiak K, Gaskin S, Rowles J, Verdile G, Howard MJ, Bond CS, Ramamoorthy A, Martins RN, Newsholme P. Amylin and beta amyloid proteins interact to form amorphous heterocomplexes with enhanced toxicity in neuronal cells. Scientific Reports. 10: 10356. PMID 32587390 DOI: 10.1038/S41598-020-66602-9  0.568
2020 Watanabe-Nakayama T, Sahoo BR, Ramamoorthy A, Ono K. High-Speed Atomic Force Microscopy Reveals the Structural Dynamics of the Amyloid-β and Amylin Aggregation Pathways. International Journal of Molecular Sciences. 21. PMID 32560229 DOI: 10.3390/Ijms21124287  0.572
2020 Cox SJ, Lam B, Prasad A, Marietta H, Stander N, Joel J, Sahoo BR, Guo F, Stoddard AK, Ivanova MI, Ramamoorthy A. High-Throughput Screening at the Membrane Interface Reveals Inhibitors of Amyloid-β. Biochemistry. PMID 32469202 DOI: 10.1021/Acs.Biochem.0C00328  0.702
2020 Sahoo BR, Cox SJ, Ramamoorthy A. High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease. Chemical Communications (Cambridge, England). PMID 32300761 DOI: 10.1039/D0Cc01551B  0.697
2019 Sahoo BR, Bekier ME, Liu Z, Kocman V, Stoddard AK, Anantharamaiah GM, Nowick J, Fierke CA, Wang Y, Ramamoorthy A. Structural Interaction of Apolipoprotein A-I Mimetic Peptide with Amyloid-β Generates Toxic Hetero-oligomers. Journal of Molecular Biology. PMID 31866295 DOI: 10.1016/J.Jmb.2019.12.005  0.547
2019 Lin Y, Sahoo BR, Ozawa D, Kinoshita M, Kang J, Lim MH, Okumura M, Huh YH, Moon E, Jang JH, Lee HJ, Ryu KY, Ham S, Won HS, Ryu KS, et al. Diverse Structural Conversion and Aggregation Pathways of Alzheimer's Amyloid-β (1-40). Acs Nano. PMID 31310506 DOI: 10.1021/Acsnano.9B01578  0.582
2019 Sahoo BR, Genjo T, Moharana KC, Ramamoorthy A. Self-Assembly of Polymer-Encased Lipid Nanodiscs and Membrane Protein Reconstitution. The Journal of Physical Chemistry. B. PMID 31050900 DOI: 10.1021/Acs.Jpcb.9B03681  0.548
2019 Sahoo BR, Genjo T, Nakayama TW, Stoddard AK, Ando T, Yasuhara K, Fierke CA, Ramamoorthy A. A cationic polymethacrylate-copolymer acts as an agonist for β-amyloid and an antagonist for amylin fibrillation. Chemical Science. 10: 3976-3986. PMID 31015938 DOI: 10.1039/C8Sc05771K  0.581
2018 Lee YH, Lin Y, Cox SJ, Kinoshita M, Sahoo BR, Ivanova M, Ramamoorthy A. Zinc Boosts EGCG's hIAPP Amyloid Inhibition both in solution and Membrane. Biochimica Et Biophysica Acta. Proteins and Proteomics. PMID 30468883 DOI: 10.1016/J.Bbapap.2018.11.006  0.702
2018 Sahoo BR, Genjo T, Bekier M, Cox SJ, Stoddard AK, Ivanova M, Yasuhara K, Fierke CA, Wang Y, Ramamoorthy A. Alzheimer's amyloid-beta intermediates generated using polymer-nanodiscs. Chemical Communications (Cambridge, England). PMID 30379172 DOI: 10.1039/C8Cc07921H  0.695
2018 Sahoo BR, Genjo T, Cox SJ, Stoddard AK, Anantharamaiah GM, Fierke C, Ramamoorthy A. Nanodisc-Forming Scaffold Protein Promoted Retardation of Amyloid-Beta Aggregation. Journal of Molecular Biology. PMID 30170005 DOI: 10.1016/J.Jmb.2018.08.018  0.708
2018 Barnaba C, Sahoo BR, Ravula T, Medina-Meza IG, Im SC, Anantharamaiah GM, Waskell L, Ramamoorthy A. Cytochrome-P450-Induced Ordering of Microsomal Membranes Modulates Affinity for Drugs. Angewandte Chemie (International Ed. in English). 57: 3391-3395. PMID 29385304 DOI: 10.1002/Anie.201713167  0.726
2018 Barnaba C, Sahoo BR, Ramamoorthy A. Cytochrome P450 Prefers to be in Liquid-Ordered Domains in the Endoplasmic Reticulum Biophysical Journal. 114: 71a. DOI: 10.1016/J.Bpj.2017.11.435  0.666
2017 Yasuhara K, Arakida J, Ravula T, Ramadugu SK, Sahoo B, Kikuchi JI, Ramamoorthy A. Spontaneous Lipid Nanodisc Fomation by Amphiphilic Polymethacrylate Copolymers. Journal of the American Chemical Society. 139: 18657-18663. PMID 29171274 DOI: 10.1021/Jacs.7B10591  0.72
2017 Sahoo BR, Maruyama K, Edula JR, Tougan T, Lin Y, Lee YH, Horii T, Fujiwara T. Mechanistic and structural basis of bioengineered bovine Cathelicidin-5 with optimized therapeutic activity. Scientific Reports. 7: 44781. PMID 28322271 DOI: 10.1038/Srep44781  0.339
2016 Sahoo BR, Fujiwara T. Conformational states of HAMP domains interacting with sensory rhodopsin membrane systems: an integrated all-atom and coarse-grained molecular dynamics simulation approach. Molecular Biosystems. PMID 27901172 DOI: 10.1039/C6Mb00730A  0.314
2016 Sahoo BR, Fujiwara T. Membrane Mediated Antimicrobial and Antitumor Activity of Cathelicidin 6: Structural Insights from Molecular Dynamics Simulation on Multi-Microsecond Scale. Plos One. 11: e0158702. PMID 27391304 DOI: 10.1371/Journal.Pone.0158702  0.421
2015 Maharana J, Dehury B, Sahoo JR, Jena I, Bej A, Panda D, Sahoo BR, Patra MC, Pradhan SK. Structural and functional insights into CARDs of zebrafish (Danio rerio) NOD1 and NOD2, and their interaction with adaptor protein RIP2. Molecular Biosystems. 11: 2324-36. PMID 26079944 DOI: 10.1039/C5Mb00212E  0.353
2015 Maharana J, Sahoo BR, Bej A, Jena I, Parida A, Sahoo JR, Dehury B, Patra MC, Martha SR, Balabantray S, Pradhan SK, Behera BK. Structural models of zebrafish (Danio rerio) NOD1 and NOD2 NACHT domains suggest differential ATP binding orientations: insights from computational modeling, docking and molecular dynamics simulations. Plos One. 10: e0121415. PMID 25811192 DOI: 10.1371/Journal.Pone.0121415  0.318
2015 Dehury B, Maharana J, Sahoo BR, Sahu J, Sen P, Modi MK, Barooah M. Molecular recognition of avirulence protein (avrxa5) by eukaryotic transcription factor xa5 of rice (Oryza sativa L.): insights from molecular dynamics simulations. Journal of Molecular Graphics & Modelling. 57: 49-61. PMID 25655560 DOI: 10.1016/J.Jmgm.2015.01.005  0.32
2014 Bej A, Sahoo BR, Swain B, Basu M, Jayasankar P, Samanta M. LRRsearch: An asynchronous server-based application for the prediction of leucine-rich repeat motifs and an integrative database of NOD-like receptors. Computers in Biology and Medicine. 53: 164-70. PMID 25150822 DOI: 10.1016/J.Compbiomed.2014.07.016  0.301
2014 Maharana J, Sahoo BR, Bej A, Patra MC, Dehury B, Bhoi GK, Lenka SK, Sahoo JR, Rout AK, Behera BK. Structural and functional investigation of zebrafish (Danio rerio) NOD1 leucine rich repeat domain and its interaction with iE-DAP. Molecular Biosystems. 10: 2942-53. PMID 25137227 DOI: 10.1039/C4Mb00212A  0.364
2014 Sahoo BR, Maharana J, Patra MC, Bhoi GK, Lenka SK, Dubey PK, Goyal S, Dehury B, Pradhan SK. Structural and dynamic investigation of bovine folate receptor alpha (FOLR1), and role of ultra-high temperature processing on conformational and thermodynamic characteristics of FOLR1-folate complex. Colloids and Surfaces. B, Biointerfaces. 121: 307-18. PMID 25023142 DOI: 10.1016/J.Colsurfb.2014.05.028  0.3
2014 Sahoo BR, Dubey PK, Goyal S, Bhoi GK, Lenka SK, Maharana J, Pradhan SK, Kataria RS. Exploration of the binding modes of buffalo PGRP1 receptor complexed with meso-diaminopimelic acid and lysine-type peptidoglycans by molecular dynamics simulation and free energy calculation. Chemico-Biological Interactions. 220: 255-68. PMID 25014416 DOI: 10.1016/J.Cbi.2014.06.028  0.354
2014 Maharana J, Patra MC, De BC, Sahoo BR, Behera BK, De S, Pradhan SK. Structural insights into the MDP binding and CARD-CARD interaction in zebrafish (Danio rerio) NOD2: a molecular dynamics approach. Journal of Molecular Recognition : Jmr. 27: 260-75. PMID 24700593 DOI: 10.1002/Jmr.2357  0.328
2014 Sahoo BR, Maharana J, Bhoi GK, Lenka SK, Patra MC, Dikhit MR, Dubey PK, Pradhan SK, Behera BK. A conformational analysis of mouse Nalp3 domain structures by molecular dynamics simulations, and binding site analysis. Molecular Biosystems. 10: 1104-16. PMID 24595807 DOI: 10.1039/C3Mb70600A  0.356
2014 Goyal S, Dubey PK, Sahoo BR, Mishra SK, Niranjan SK, Singh S, Mahajan R, Kataria RS. Sequence based structural characterization and genetic diversity analysis across coding and promoter regions of goat Toll-like receptor 5 gene. Gene. 540: 238-45. PMID 24530311 DOI: 10.1016/J.Gene.2014.01.076  0.303
2013 Kar RK, Ansari MY, Suryadevara P, Sahoo BR, Sahoo GC, Dikhit MR, Das P. Computational elucidation of structural basis for ligand binding with Leishmania donovani adenosine kinase. Biomed Research International. 2013: 609289. PMID 23984386 DOI: 10.1155/2013/609289  0.316
2013 Sahoo BR, Basu M, Swain B, Dikhit MR, Jayasankar P, Samanta M. Elucidation of novel structural scaffold in rohu TLR2 and its binding site analysis with peptidoglycan, lipoteichoic acid and zymosan ligands, and downstream MyD88 adaptor protein. Biomed Research International. 2013: 185282. PMID 23956969 DOI: 10.1155/2013/185282  0.308
2013 Sahoo BR, Swain B, Dikhit MR, Basu M, Bej A, Jayasankar P, Samanta M. Activation of nucleotide-binding oligomerization domain 1 (NOD1) receptor signaling in Labeo rohita by iE-DAP and identification of ligand-binding key motifs in NOD1 by molecular modeling and docking. Applied Biochemistry and Biotechnology. 170: 1282-309. PMID 23657901 DOI: 10.1007/S12010-013-0263-6  0.327
2013 Maharana J, Swain B, Sahoo BR, Dikhit MR, Basu M, Mahapatra AS, Jayasankar P, Samanta M. Identification of MDP (muramyl dipeptide)-binding key domains in NOD2 (nucleotide-binding and oligomerization domain-2) receptor of Labeo rohita. Fish Physiology and Biochemistry. 39: 1007-23. PMID 23255217 DOI: 10.1007/S10695-012-9758-2  0.34
2012 Sahoo BR, Basu M, Swain B, Maharana J, Dikhit MR, Jayasankar P, Samanta M. Structural insights of rohu TLR3, its binding site analysis with fish reovirus dsRNA, poly I:C and zebrafish TRIF. International Journal of Biological Macromolecules. 51: 531-43. PMID 22705475 DOI: 10.1016/J.Ijbiomac.2012.06.005  0.303
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