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Darin Clark - Publications

Affiliations: 
2010-2015 Biomedical Engineering Duke University, Durham, NC 
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50 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Allphin AJ, Mahzarnia A, Clark DP, Qi Y, Han ZY, Bhandari P, Ghaghada KB, Badea A, Badea CT. Advanced photon counting CT imaging pipeline for cardiac phenotyping of apolipoprotein E mouse models. Plos One. 18: e0291733. PMID 37796905 DOI: 10.1371/journal.pone.0291733  0.747
2023 Nadkarni R, Clark DP, Allphin AJ, Badea CT. A Deep Learning Approach for Rapid and Generalizable Denoising of Photon-Counting Micro-CT Images. Tomography (Ann Arbor, Mich.). 9: 1286-1302. PMID 37489470 DOI: 10.3390/tomography9040102  0.776
2023 Clark DP, Badea CT. MCR toolkit: A GPU-based toolkit for multi-channel reconstruction of preclinical and clinical x-ray CT data. Medical Physics. PMID 37285215 DOI: 10.1002/mp.16532  0.783
2023 Schwartz FR, Clark DP, Rigiroli F, Kalisz K, Wildman-Tobriner B, Thomas S, Wilson J, Badea CT, Marin D. Evaluation of the impact of a novel denoising algorithm on image quality in dual-energy abdominal CT of obese patients. European Radiology. PMID 37083742 DOI: 10.1007/s00330-023-09644-7  0.748
2023 Allphin AJ, Clark DP, Thüring T, Bhandari P, Ghaghada KB, Badea CT. Micro-CT imaging of multiple K-edge elements using GaAs and CdTe photon counting detectors. Physics in Medicine and Biology. PMID 36963115 DOI: 10.1088/1361-6560/acc77e  0.798
2022 Nadkarni R, Allphin A, Clark DP, Badea CT. Material decomposition from photon-counting CT using a convolutional neural network and energy-integrating CT training labels. Physics in Medicine and Biology. PMID 35767986 DOI: 10.1088/1361-6560/ac7d34  0.78
2022 Allphin AJ, Mowery YM, Lafata KJ, Clark DP, Bassil AM, Castillo R, Odhiambo D, Holbrook MD, Ghaghada KB, Badea CT. Photon Counting CT and Radiomic Analysis Enables Differentiation of Tumors Based on Lymphocyte Burden. Tomography (Ann Arbor, Mich.). 8: 740-753. PMID 35314638 DOI: 10.3390/tomography8020061  0.816
2021 Holbrook MD, Clark DP, Patel R, Qi Y, Bassil AM, Mowery YM, Badea CT. Detection of Lung Nodules in Micro-CT Imaging Using Deep Learning. Tomography (Ann Arbor, Mich.). 7: 358-372. PMID 34449750 DOI: 10.3390/tomography7030032  0.799
2021 Schwartz FR, Clark DP, Ding Y, Ramirez-Giraldo JC, Badea CT, Marin D. Evaluating renal lesions using deep-learning based extension of dual-energy FoV in dual-source CT-A retrospective pilot study. European Journal of Radiology. 139: 109734. PMID 33933837 DOI: 10.1016/j.ejrad.2021.109734  0.742
2020 Holbrook M, Clark DP, Badea CT. Dual source hybrid spectral micro-CT using an energy-integrating and a photon-counting detector. Physics in Medicine and Biology. PMID 32702686 DOI: 10.1088/1361-6560/Aba8B2  0.853
2020 Clark DP, Schwartz FR, Marin D, Ramirez-Giraldo JC, Badea CT. Deep learning based spectral extrapolation for dual-source, dual-energy x-ray computed tomography. Medical Physics. PMID 32531114 DOI: 10.1002/Mp.14324  0.796
2019 Clark DP, Holbrook M, Lee CL, Badea CT. Photon-counting cine-cardiac CT in the mouse. Plos One. 14: e0218417. PMID 31536493 DOI: 10.1371/Journal.Pone.0218417  0.851
2019 Ding Y, Vanselow DJ, Yakovlev MA, Katz SR, Lin AY, Clark DP, Vargas P, Xin X, Copper JE, Canfield VA, Ang KC, Wang Y, Xiao X, De Carlo F, van Rossum DB, et al. Computational 3D histological phenotyping of whole zebrafish by X-ray histotomography. Elife. 8. PMID 31063133 DOI: 10.7554/Elife.44898  0.353
2019 Holbrook M, Clark DP, Badea CT. Overcoming detector limitations of x-ray photon counting for preclinical microcomputed tomography. Journal of Medical Imaging (Bellingham, Wash.). 6: 011004. PMID 30840718 DOI: 10.1117/1.Jmi.6.1.011004  0.841
2019 Badea CT, Clark DP, Holbrook M, Srivastava M, Mowery Y, Ghaghada KB. Functional imaging of tumor vasculature using iodine and gadolinium-based nanoparticle contrast agents: a comparison of spectral micro-CT using energy integrating and photon counting detectors. Physics in Medicine and Biology. PMID 30708357 DOI: 10.1088/1361-6560/Ab03E2  0.859
2018 Lin AY, Ding Y, Vanselow DJ, Katz SR, Yakovlev MA, Clark DP, Mandrell D, Copper JE, van Rossum DB, Cheng KC. Rigid Embedding of Fixed and Stained, Whole, Millimeter-Scale Specimens for Section-free 3D Histology by Micro-Computed Tomography. Journal of Visualized Experiments : Jove. PMID 30394379 DOI: 10.3791/58293  0.309
2017 Xin X, Clark D, Ang KC, van Rossum DB, Copper J, Xiao X, La Riviere PJ, Cheng KC. Synchrotron microCT imaging of soft tissue in juvenile zebrafish reveals retinotectal projections. Proceedings of Spie--the International Society For Optical Engineering. 10060. PMID 32733117 DOI: 10.1117/12.2267477  0.362
2017 Holbrook M, Clark DP, Badea CT. Low-dose 4D cardiac imaging in small animals using dual source micro-CT. Physics in Medicine and Biology. PMID 29148430 DOI: 10.1088/1361-6560/Aa9B45  0.834
2017 Clark DP, Badea CT. Hybrid spectral CT reconstruction. Plos One. 12: e0180324. PMID 28683124 DOI: 10.1371/Journal.Pone.0180324  0.785
2017 Clark DP, Badea CT. Localized and efficient cardiac CT reconstruction Proceedings of Spie. 10132. DOI: 10.1117/12.2254700  0.782
2017 Clark DP, Badea CT. Low-dose 4D myocardial perfusion with x-ray micro-CT Proceedings of Spie. 10132. DOI: 10.1117/12.2254548  0.803
2017 Clark DP, Badea CT. A data-driven regularization strategy for statistical CT reconstruction Proceedings of Spie. 10132. DOI: 10.1117/12.2254484  0.683
2016 Touch M, Clark DP, Barber W, Badea CT. A neural network-based method for spectral distortion correction in photon counting x-ray CT. Physics in Medicine and Biology. 61: 6132-6153. PMID 27469292 DOI: 10.1088/0031-9155/61/16/6132  0.806
2016 Clark DP, Badea CT. Joint regularization for spectrooral CT reconstruction Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9783. DOI: 10.1117/12.2217091  0.739
2016 Touch M, Clark DP, Barber W, Badea CT. Novel approaches to address spectral distortions in photon counting x-ray CT using artificial neural networks Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9783. DOI: 10.1117/12.2217037  0.759
2016 Clark DP, Badea CT. Resolution-enhancing hybrid, spectral CT reconstruction Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9783. DOI: 10.1117/12.2216935  0.805
2015 Clark DP, Lee CL, Kirsch DG, Badea CT. Spectrotemporal CT data acquisition and reconstruction at low dose. Medical Physics. 42: 6317. PMID 26520724 DOI: 10.1118/1.4931407  0.816
2015 Clark DP, Badea CT. Rank-sparsity constrained atlas construction and phenotyping Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9413. DOI: 10.1117/12.2081415  0.71
2015 Clark DP, Lee CL, Kirsch DG, Badea CT. Rank-sparsity constrained, spectro-temporal reconstruction for retrospectively gated, dynamic CT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9412. DOI: 10.1117/12.2081379  0.79
2015 Clark DP, Badea CT. Spectral deblurring: An algorithm for high-resolution, hybrid spectral CT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9412. DOI: 10.1117/12.2081249  0.788
2015 Clark DP, Touch M, Barber W, Badea CT. Simultaneous imaging of multiple contrast agents using full-spectrum micro-CT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9412. DOI: 10.1117/12.2081049  0.812
2014 Clark DP, Badea CT. Spectral diffusion: an algorithm for robust material decomposition of spectral CT data. Physics in Medicine and Biology. 59: 6445-66. PMID 25296173 DOI: 10.1088/0031-9155/59/21/6445  0.746
2014 Clark DP, Badea CT. Micro-CT of rodents: state-of-the-art and future perspectives. Physica Medica : Pm : An International Journal Devoted to the Applications of Physics to Medicine and Biology : Official Journal of the Italian Association of Biomedical Physics (Aifb). 30: 619-34. PMID 24974176 DOI: 10.1016/J.Ejmp.2014.05.011  0.812
2014 Ashton JR, Befera N, Clark D, Qi Y, Mao L, Rockman HA, Johnson GA, Badea CT. Anatomical and functional imaging of myocardial infarction in mice using micro-CT and eXIA 160 contrast agent. Contrast Media & Molecular Imaging. 9: 161-8. PMID 24523061 DOI: 10.1002/Cmmi.1557  0.827
2014 Lee CL, Min H, Befera N, Clark D, Qi Y, Das S, Johnson GA, Badea CT, Kirsch DG. Assessing cardiac injury in mice with dual energy-microCT, 4D-microCT, and microSPECT imaging after partial heart irradiation. International Journal of Radiation Oncology, Biology, Physics. 88: 686-93. PMID 24521682 DOI: 10.1016/J.Ijrobp.2013.11.238  0.743
2014 Ashton JR, Clark DP, Moding EJ, Ghaghada K, Kirsch DG, West JL, Badea CT. Dual-energy micro-CT functional imaging of primary lung cancer in mice using gold and iodine nanoparticle contrast agents: a validation study. Plos One. 9: e88129. PMID 24520351 DOI: 10.1371/Journal.Pone.0088129  0.827
2014 Badea CT, Befera N, Clark D, Qi Y, Johnson GA. Dual-energy micro-CT imaging of pulmonary airway obstruction: Correlation with micro-SPECT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9038. DOI: 10.1117/12.2043094  0.729
2014 Clark DP, Johnson GA, Badea CT. A multi-resolution approach to retrospectively-gated cardiac micro-CT reconstruction Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9033. DOI: 10.1117/12.2043044  0.681
2014 Clark DP, Johnson GA, Badea CT. Robust material decomposition for spectral CT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 9038. DOI: 10.1117/12.2042546  0.795
2013 Clark DP, Ghaghada K, Moding EJ, Kirsch DG, Badea CT. In vivo characterization of tumor vasculature using iodine and gold nanoparticles and dual energy micro-CT. Physics in Medicine and Biology. 58: 1683-704. PMID 23422321 DOI: 10.1088/0031-9155/58/6/1683  0.768
2013 Bhavane R, Badea C, Ghaghada KB, Clark D, Vela D, Moturu A, Annapragada A, Johnson GA, Willerson JT, Annapragada A. Dual-energy computed tomography imaging of atherosclerotic plaques in a mouse model using a liposomal-iodine nanoparticle contrast agent. Circulation. Cardiovascular Imaging. 6: 285-94. PMID 23349231 DOI: 10.1161/Circimaging.112.000119  0.769
2013 Moding EJ, Clark DP, Qi Y, Li Y, Ma Y, Ghaghada K, Johnson GA, Kirsch DG, Badea CT. Dual-energy micro-computed tomography imaging of radiation-induced vascular changes in primary mouse sarcomas. International Journal of Radiation Oncology, Biology, Physics. 85: 1353-9. PMID 23122984 DOI: 10.1016/J.Ijrobp.2012.09.027  0.732
2013 Clark D, Badea A, Johnson GA, Badea CT. Constructing a 4D murine cardiac micro-CT atlas for automated segmentation and phenotyping applications Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8669. DOI: 10.1117/12.2007043  0.764
2013 Clark D, Johnston SM, Johnson GA, Badea CT. The effect of scatter correction on dual energy micro-CT Progress in Biomedical Optics and Imaging - Proceedings of Spie. 8668. DOI: 10.1117/12.2006904  0.835
2012 Clark D, Johnson GA, Badea CT. Denoising of 4D Cardiac Micro-CT Data Using Median-Centric Bilateral Filtration. Proceedings of Spie--the International Society For Optical Engineering. 8314. PMID 24386540 DOI: 10.1117/12.911478  0.734
2012 Bell RC, Rogith D, Johnson CW, Badea CT, Athreya KK, Espinosa G, Clark D, Ghafoori AP, Li Y, Kirsch DG, Annapragada A, Ghaghada K. Data analysis: evaluation of nanoscale contrast agent enhanced CT scan to differentiate between benign and malignant lung cancer in mouse model. Amia ... Annual Symposium Proceedings / Amia Symposium. Amia Symposium. 2012: 27-35. PMID 23304269  0.736
2012 Clark D, Badea A, Liu Y, Johnson GA, Badea CT. Registration-based segmentation of murine 4D cardiac micro-CT data using symmetric normalization. Physics in Medicine and Biology. 57: 6125-45. PMID 22971564 DOI: 10.1088/0031-9155/57/19/6125  0.749
2012 Badea CT, Athreya KK, Espinosa G, Clark D, Ghafoori AP, Li Y, Kirsch DG, Johnson GA, Annapragada A, Ghaghada KB. Computed tomography imaging of primary lung cancer in mice using a liposomal-iodinated contrast agent. Plos One. 7: e34496. PMID 22485175 DOI: 10.1371/Journal.Pone.0034496  0.772
2011 Cheng KC, Xin X, Clark DP, La Riviere P. Whole-animal imaging, gene function, and the Zebrafish Phenome Project. Current Opinion in Genetics & Development. 21: 620-9. PMID 21963132 DOI: 10.1016/J.Gde.2011.08.006  0.331
2010 Rivière PJL, Clark D, Rojek A, Vargas P, Xiao X, DeCarlo F, Kindlmann G, Cheng K. Optimizing synchrotron microCT for high-throughput phenotyping of zebrafish Proceedings of Spie. 7804. DOI: 10.1117/12.860783  0.427
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