Jonathan Cooper - Publications

School of Life Sciences University of Lincoln UK 

130 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Zaman A, Wu X, Lemoff A, Yadavalli S, Lee J, Wang C, Cooper J, McMillan EA, Yeaman C, Mirzaei H, White MA, Bivona TG. Exocyst protein subnetworks integrate Hippo and mTOR signaling to promote virus detection and cancer. Cell Reports. 36: 109491. PMID 34348154 DOI: 10.1016/j.celrep.2021.109491  1
2021 Adjogatse E, Bennett J, Guo J, Erskine PT, Wood SP, Wren BW, Cooper JB. The X-ray structure of L-threonine dehydrogenase from the common hospital pathogen Clostridium difficile. Acta Crystallographica. Section F, Structural Biology Communications. 77: 269-274. PMID 34341193 DOI: 10.1107/S2053230X21007135  1
2021 Li Y, Chen X, Zhao Y, Wan Z, Zeng Y, Ma Y, Zhou L, Xu G, Reboud J, Cooper JM, Zhang C. A rapid variant-tolerant reverse transcription loop-mediated isothermal amplification assay for the point of care detection of HIV-1. The Analyst. PMID 34323889 DOI: 10.1039/d1an00598g  1
2021 Wright RW, Huston LJ, Haas AK, Pennings JS, Allen CR, Cooper DE, DeBerardino TM, Dunn WR, Lantz BBA, Spindler KP, Stuart MJ, Albright JP, Amendola AN, Andrish JT, ... Cooper JM, et al. Association Between Graft Choice and 6-Year Outcomes of Revision Anterior Cruciate Ligament Reconstruction in the MARS Cohort. The American Journal of Sports Medicine. 3635465211027170. PMID 34260326 DOI: 10.1177/03635465211027170  1
2021 Chesters RA, Pepper F, Morgan C, Cooper JD, Howes OD, Vernon AC, Stone JM. Brain volume in chronic ketamine users - relationship to sub-threshold psychotic symptoms and relevance to schizophrenia. Psychopharmacology. PMID 34228135 DOI: 10.1007/s00213-021-05873-0  0.01
2021 Steenkiste EM, Berndt JD, Pilling C, Simpkins C, Cooper JA. A Cas-BCAR3 co-regulatory circuit controls lamellipodia dynamics. Elife. 10. PMID 34169835 DOI: 10.7554/eLife.67078  1
2021 Gulla K, Cibelli N, Cooper JW, Fuller HC, Schneiderman Z, Witter S, Zhang Y, Changela A, Geng H, Hatcher C, Narpala S, Tsybovsky Y, Zhang B, Vrc Production Program, McDermott AB, et al. A non-affinity purification process for GMP production of prefusion-closed HIV-1 envelope trimers from clades A and C for clinical evaluation. Vaccine. PMID 34020817 DOI: 10.1016/j.vaccine.2021.04.063  1
2021 Cui H, Glidle A, Cooper JM. Spatial Heterodyne Offset Raman Spectroscopy Enabling Rapid, High Sensitivity Characterization of Materials' Interfaces. Small (Weinheim An Der Bergstrasse, Germany). e2101114. PMID 34013665 DOI: 10.1002/smll.202101114  1
2021 Cooper JJ, Mills DS, China L. Response: Commentary: Remote Electronic Training Aids; Efficacy at Deterring Predatory Behavior in Dogs and Implications for Training and Policy. Frontiers in Veterinary Science. 8: 675005. PMID 33982676 DOI: 10.3389/fvets.2021.675005  1
2021 Pacharne S, Dovey OM, Cooper JL, Gu M, Friedrich MJ, Rajan SS, Barenboim M, Collord G, Vijayabaskar MS, Ponstingl H, De Braekeleer E, Bautista R, Mazan M, Rad R, Tzelepis K, et al. SETBP1 overexpression acts in the place of class-defining mutations to drive FLT3-ITD-mutant AML. Blood Advances. 5: 2412-2425. PMID 33956058 DOI: 10.1182/bloodadvances.2020003443  1
2021 Kan SH, Elsharkawi I, Le SQ, Prill H, Mangini L, Cooper JD, Lawrence R, Sands MS, Crawford BE, Dickson PI. Biochemical evaluation of intracerebroventricular rhNAGLU-IGF2 enzyme replacement therapy in neonatal mice with Sanfilippo B syndrome. Molecular Genetics and Metabolism. PMID 33839004 DOI: 10.1016/j.ymgme.2021.03.013  1
2021 White KA, Nelvagal HR, Poole TA, Lu B, Johnson TB, Davis S, Pratt MA, Brudvig J, Assis AB, Likhite S, Meyer K, Kaspar BK, Cooper JD, Wang S, Weimer JM. Intracranial delivery of AAV9 gene therapy partially prevents retinal degeneration and visual deficits in CLN6-Batten disease mice. Molecular Therapy. Methods & Clinical Development. 20: 497-507. PMID 33665223 DOI: 10.1016/j.omtm.2020.12.014  1
2021 Dunn WG, Gu MS, Fabre MA, Cooper J, Nomdedeu JF, Koumas L, Nicolaou K, Chi J, Costeas P, Vassiliou GS. The PML-RARA fusion is not detectable in historical blood samples of acute promyelocytic leukaemia patients. Annals of Hematology. PMID 33650061 DOI: 10.1007/s00277-021-04472-5  0.01
2021 Cooper J, Xu Q, Zhou L, Pavlovic M, Ojeda V, Moulick K, de Stanchina E, Poirier JT, Zauderer M, Rudin CM, Karajannis MA, Hanemann CO, Giancotti FG. Correction: Combined Inhibition of NEDD8-activating Enzyme and mTOR Suppresses NF2 Loss-driven Tumorigenesis. Molecular Cancer Therapeutics. 20: 450. PMID 33547247 DOI: 10.1158/1535-7163.MCT-20-1027  1
2021 Simon G, Busch C, Andrade MAB, Reboud J, Cooper JM, Desmulliez MPY, Riehle MO, Bernassau AL. Bandpass sorting of heterogeneous cells using a single surface acoustic wave transducer pair. Biomicrofluidics. 15: 014105. PMID 33537112 DOI: 10.1063/5.0040181  1
2020 Egeland MT, Tarczyluk-Wells MM, Asmar MM, Adintori EG, Lawrence R, Snella EM, Jens JK, Crawford BE, Wait JCM, McCullagh E, Pinkstaff J, Cooper JD, Ellinwood NM. Central nervous system pathology in preclinical MPS IIIB dogs reveals progressive changes in clinically relevant brain regions. Scientific Reports. 10: 20365. PMID 33230178 DOI: 10.1038/s41598-020-77032-y  1
2020 Mao K, Yang Z, Zhang H, Li X, Cooper JM. Paper-based nanosensors to evaluate community-wide illicit drug use for wastewater-based epidemiology. Water Research. 189: 116559. PMID 33161329 DOI: 10.1016/j.watres.2020.116559  1
2020 Daemen A, Cooper J, Myrta S, Wongchenko MJ, Lin E, Long JE, Foreman O, Modrusan Z, Tremayne JR, de la Cruz CC, Merchant M, Martin SE, Yan Y, Junttila MR. Transcriptional subtypes resolve tumor heterogeneity and identify vulnerabilities to MEK inhibition in lung adenocarcinoma. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 33023953 DOI: 10.1158/1078-0432.CCR-20-1835  1
2020 Brophy RH, Wright RW, Huston LJ, Haas AK, Nwosu SK, Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Lantz BBA, Mann B, Spindler KP, Stuart MJ, ... Cooper JM, et al. Rate of Infection Following Revision Anterior Cruciate Ligament Reconstruction and associated patient- and surgeon- dependent risk factors: Retrospective results from MOON and MARS data collected from 2002 to 2011. Journal of Orthopaedic Research : Official Publication of the Orthopaedic Research Society. PMID 33002248 DOI: 10.1002/jor.24871  1
2020 Moreddu R, Elsherif M, Adams H, Moschou D, Cordeiro MF, Wolffsohn JS, Vigolo D, Butt H, Cooper JM, Yetisen AK. Integration of paper microfluidic sensors into contact lenses for tear fluid analysis. Lab On a Chip. PMID 32944726 DOI: 10.1039/d0lc00438c  0.01
2020 Nelvagal HR, Hurtado ML, Eaton SL, Kline RA, Lamont DJ, Sands MS, Wishart TM, Cooper JD. Comparative proteomic profiling reveals mechanisms for early spinal cord vulnerability in CLN1 disease. Scientific Reports. 10: 15157. PMID 32938982 DOI: 10.1038/s41598-020-72075-7  1
2020 Wright RW, Huston LJ, Haas AK, Nwosu SK, Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Lantz BBA, Mann B, Spindler KP, Stuart MJ, Pennings JS, ... Cooper JM, et al. Meniscal Repair in the Setting of Revision Anterior Cruciate Ligament Reconstruction: Results From the MARS Cohort. The American Journal of Sports Medicine. 363546520948850. PMID 32822238 DOI: 10.1177/0363546520948850  1
2020 China L, Mills DS, Cooper JJ. Efficacy of Dog Training With and Without Remote Electronic Collars vs. a Focus on Positive Reinforcement. Frontiers in Veterinary Science. 7: 508. PMID 32793652 DOI: 10.3389/Fvets.2020.00508  1
2020 Au YZ, Gu M, De Braekeleer E, Gozdecka M, Aspris D, Tarumoto Y, Cooper J, Yu J, Ong SH, Chen X, Tzelepis K, Huntly BJP, Vassiliou G, Yusa K. KAT7 is a genetic vulnerability of acute myeloid leukemias driven by MLL rearrangements. Leukemia. PMID 32764680 DOI: 10.1038/s41375-020-1001-z  1
2020 Clerx M, Cooling MT, Cooper J, Garny A, Moyle K, Nickerson DP, Nielsen PMF, Sorby H. CellML 2.0. Journal of Integrative Bioinformatics. PMID 32759406 DOI: 10.1515/jib-2020-0021  1
2020 Guo J, Douangamath A, Song W, Coker AR, Chan AWE, Wood SP, Cooper JB, Resnick E, London N, Delft FV. -screening for discovery of human norovirus 3C-like protease inhibitors. Journal of Structural Biology: X. 4: 100031. PMID 32743543 DOI: 10.1016/j.yjsbx.2020.100031  1
2020 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... Cooper JL, et al. Author Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 11: 3878. PMID 32728019 DOI: 10.1038/S41467-020-17746-9  1
2020 Le SQ, Nestrasil I, Kan SH, Egeland M, Cooper JD, Elashoff D, Guo R, Tolar J, Yee JK, Dickson PI. Myelin and Lipid Composition of the Corpus Callosum in Mucopolysaccharidosis Type I Mice. Lipids. PMID 32537944 DOI: 10.1002/Lipd.12261  1
2020 Yang GJ, Yang Y, Shaddeau A, Cai CX, Li Y, Gulla K, Zhang Y, Ou L, Cooper JW, Lei QP. A unique algorithm for the determination of peptide-carrier protein conjugation ratio by amino acid analysis using intrinsic internal standard. Vaccine. PMID 32448620 DOI: 10.1016/j.vaccine.2020.04.080  1
2020 Na Y, Jiménez EC, Kon E, Cao H, Jossin Y, Cooper JA. Fbxo45 binds SPRY motifs in the extracellular domain of N-cadherin and regulates neuron migration during brain development. Molecular and Cellular Biology. PMID 32341084 DOI: 10.1128/Mcb.00539-19  1
2020 Tao R, McHale G, Reboud J, Cooper JM, Torun H, Luo J, Luo J, Yang X, Zhou J, Canyelles-Pericas P, Wu Q, Fu Y. Hierarchical nanotexturing enables acoustofluidics on slippery yet sticky, flexible surfaces. Nano Letters. PMID 32233442 DOI: 10.1021/Acs.Nanolett.0C00005  1
2020 Karda R, Rahim AA, Wong AMS, Suff N, Diaz JA, Perocheau DP, Tijani M, Ng J, Baruteau J, Martin NP, Hughes M, Delhove JMKM, Counsell JR, Cooper JD, Henckaerts E, et al. Generation of light-producing somatic-transgenic mice using adeno-associated virus vectors. Scientific Reports. 10: 2121. PMID 32034258 DOI: 10.1038/s41598-020-59075-3  1
2020 Ray A, Khalid MA, Demčenko A, Daloglu M, Tseng D, Reboud J, Cooper JM, Ozcan A. Holographic detection of nanoparticles using acoustically actuated nanolenses. Nature Communications. 11: 171. PMID 31949134 DOI: 10.1038/S41467-019-13802-1  1
2020 Schneck NA, Ivleva VB, Cai CX, Cooper JW, Lei QP. Characterization of the furin cleavage motif for HIV-1 trimeric envelope glycoprotein by intact LC-MS analysis. The Analyst. PMID 31932825 DOI: 10.1039/c9an02098e  1
2020 Cooper JD, Mole SE. Future perspectives: What lies ahead for Neuronal Ceroid Lipofuscinosis research? Biochimica Et Biophysica Acta. Molecular Basis of Disease. 165681. PMID 31926264 DOI: 10.1016/J.Bbadis.2020.165681  0.01
2020 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... Cooper JL, et al. Publisher Correction: The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 11: 204. PMID 31911614 DOI: 10.1038/S41467-019-13969-7  1
2019 Papaioannou D, Petri A, Dovey OM, Terreri S, Wang E, Collins FA, Woodward LA, Walker AE, Nicolet D, Pepe F, Kumchala P, Bill M, Walker CJ, Karunasiri M, Mrózek K, ... Cooper JL, et al. The long non-coding RNA HOXB-AS3 regulates ribosomal RNA transcription in NPM1-mutated acute myeloid leukemia. Nature Communications. 10: 5351. PMID 31767858 DOI: 10.1038/S41467-019-13259-2  1
2019 Nelvagal HR, Lange J, Takahashi K, Tarczyluk-Wells MA, Cooper JD. Pathomechanisms in the neuronal ceroid lipofuscinoses. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 165570. PMID 31678162 DOI: 10.1016/j.bbadis.2019.165570  1
2019 Xu G, Lai M, Wilson R, Glidle A, Reboud J, Cooper JM. Branched hybridization chain reaction-using highly dimensional DNA nanostructures for label-free, reagent-less, multiplexed molecular diagnostics. Microsystems & Nanoengineering. 5: 37. PMID 31636927 DOI: 10.1038/s41378-019-0076-z  1
2019 Schneck NA, Ivleva VB, Rosales-Zavala E, Wang X, Gollapudi D, Cooper JW, Lei QP. Using LC-MS to Identify Clipping in Self-Assembled Nanoparticles During Vaccine Development. Journal of the American Society For Mass Spectrometry. PMID 31595432 DOI: 10.1007/s13361-019-02318-z  1
2019 Kon E, Calvo-Jimenez E, Cossard A, Na Y, Cooper JA, Jossin Y. N-cadherin-regulated FGFR ubiquitination and degradation control mammalian neocortical projection neuron migration. Elife. 8. PMID 31577229 DOI: 10.7554/Elife.47673  1
2019 Tarczyluk-Wells MA, Salzlechner C, Najafi AR, Lim MJ, Smith D, Platt FM, Williams BP, Cooper JD. Combined Anti-inflammatory and Neuroprotective Treatments Have the Potential to Impact Disease Phenotypes in Mice. Frontiers in Neurology. 10: 963. PMID 31572287 DOI: 10.3389/Fneur.2019.00963  1
2019 Khalid MA, Ray A, Cohen S, Tassieri M, Andriejus D, Tseng D, Reboud J, Ozcan A, Cooper JM. Computational Image Analysis of Guided Acoustic Waves Enables Rheological Assessment of Sub-Nanoliter Volumes. Acs Nano. PMID 31490647 DOI: 10.1021/Acsnano.9B03219  1
2019 Crank MC, Ruckwardt TJ, Chen M, Morabito KM, Phung E, Costner PJ, Holman LA, Hickman SP, Berkowitz NM, Gordon IJ, Yamshchikov GV, Gaudinski MR, Kumar A, Chang LA, Moin SM, ... Cooper JW, et al. A proof of concept for structure-based vaccine design targeting RSV in humans. Science (New York, N.Y.). 365: 505-509. PMID 31371616 DOI: 10.1126/science.aav9033  1
2019 Cai CX, Schneck NA, Zhao W, Blackstock D, Cai J, Harris D, Ivleva VB, Gollapudi D, Horwitz J, Arnold FJ, Cooper JW, Lei QP. Characterization of AEBSF-antibody modifications for a protease inhibitor supplementation strategy. Analytical and Bioanalytical Chemistry. PMID 31367804 DOI: 10.1007/s00216-019-01995-9  1
2019 Wright RW, Huston LJ, Haas AK, Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Lantz BBA, Mann B, Spindler KP, Stuart MJ, Nwosu SK, Albright JP, ... Cooper JM, et al. Predictors of Patient-Reported Outcomes at 2 Years After Revision Anterior Cruciate Ligament Reconstruction. The American Journal of Sports Medicine. 363546519862279. PMID 31318611 DOI: 10.1177/0363546519862279  1
2019 Nguyen CH, Glüxam T, Schlerka A, Bauer K, Grandits AM, Hackl H, Dovey O, Zöchbauer-Müller S, Cooper JL, Vassiliou GS, Stoiber D, Wieser R, Heller G. SOCS2 is part of a highly prognostic 4-gene signature in AML and promotes disease aggressiveness. Scientific Reports. 9: 9139. PMID 31235852 DOI: 10.1038/s41598-019-45579-0  1
2019 Buechler MB, Kim KW, Onufer EJ, Williams JW, Little CC, Dominguez CX, Li Q, Sandoval W, Cooper JE, Harris CA, Junttila MR, Randolph GJ, Turley SJ. A Stromal Niche Defined by Expression of the Transcription Factor WT1 Mediates Programming and Homeostasis of Cavity-Resident Macrophages. Immunity. PMID 31231034 DOI: 10.1016/J.Immuni.2019.05.010  1
2019 Bigouette JP, Owen EC, Lantz BBA, Hoellrich RG, Huston LJ, Haas AK, Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Mann B, Spindler KP, Stuart MJ, ... Cooper JM, et al. Relationship Between Sports Participation After Revision Anterior Cruciate Ligament Reconstruction and 2-Year Patient-Reported Outcome Measures. The American Journal of Sports Medicine. 363546519856348. PMID 31225999 DOI: 10.1177/0363546519856348  1
2019 Ivleva VB, Cooper JW, Arnold FJ, Lei QP. Overcoming Challenges in Structural Characterization of HIV-1 Envelope Glycoprotein by LC-MS/MS. Journal of the American Society For Mass Spectrometry. PMID 31111416 DOI: 10.1007/s13361-019-02225-3  1
2019 Yang G, Schneck NA, Barefoot N, Yang Y, Gollapudi D, Arnold FJ, Cooper JW, Lei QP. Titer measurement of HIV-1 envelope trimeric glycoprotein in cell culture media by a new tandem ion exchange and size exclusion chromatography (IEC-SEC) method. Vaccine. PMID 31060952 DOI: 10.1016/j.vaccine.2019.04.089  1
2019 Shaddeau AW, Schneck NA, Li Y, Ivleva VB, Arnold FJ, Cooper JW, Lei QP. Development of a New Tandem Ion Exchange and Size Exclusion Chromatography Method To Monitor Vaccine Particle Titer in Cell Culture Media. Analytical Chemistry. PMID 31034206 DOI: 10.1021/acs.analchem.9b00095  1
2019 Cai CX, Schneck NA, Harris D, Blackstock D, Ivleva VB, Cheng KC, Charlton A, Arnold FJ, Cooper JW, Lei QP. Quantification of residual AEBSF-related impurities by reversed-phase liquid chromatography. Journal of Chromatography. B, Analytical Technologies in the Biomedical and Life Sciences. 1116: 19-23. PMID 30953918 DOI: 10.1016/j.jchromb.2019.03.022  1
2019 Cooper J, Giancotti FG. Integrin Signaling in Cancer: Mechanotransduction, Stemness, Epithelial Plasticity, and Therapeutic Resistance. Cancer Cell. 35: 347-367. PMID 30889378 DOI: 10.1016/j.ccell.2019.01.007  0.01
2019 Le LQ, Cooper JM, Patel AJ, Chen Z, Liao CP, Chen K, Wang Y, Mo J. Overcoming BET inhibitor resistance in malignant peripheral nerve sheath tumors. Clinical Cancer Research : An Official Journal of the American Association For Cancer Research. PMID 30796033 DOI: 10.1158/1078-0432.Ccr-18-2437  1
2019 Reboud J, Xu G, Garrett A, Adriko M, Yang Z, Tukahebwa EM, Rowell C, Cooper JM. Paper-based microfluidics for DNA diagnostics of malaria in low resource underserved rural communities. Proceedings of the National Academy of Sciences of the United States of America. PMID 30782834 DOI: 10.1073/pnas.1812296116  1
2019 Clarke T, Mills D, Cooper J. Exploring the utility of traditional breed group classification as an explanation of problem-solving behavior of the domestic dog (Canis familiaris) Journal of Veterinary Behavior-Clinical Applications and Research. 33: 103-107. DOI: 10.1016/J.Jveb.2019.06.004  1
2018 Mazilu M, Demčenko A, Wilson R, Reboud J, Cooper JM. Breaking the Symmetry of Momentum Conservation Using Evanescent Acoustic Fields. Physical Review Letters. 121: 244301. PMID 30608756 DOI: 10.1103/PhysRevLett.121.244301  1
2018 Mole SE, Anderson G, Band HA, Berkovic SF, Cooper JD, Kleine Holthaus SM, McKay TR, Medina DL, Rahim AA, Schulz A, Smith AJ. Clinical challenges and future therapeutic approaches for neuronal ceroid lipofuscinosis. The Lancet. Neurology. PMID 30470609 DOI: 10.1016/S1474-4422(18)30368-5  1
2018 Chen Z, Mo J, Brosseau JP, Shipman T, Wang Y, Liao CP, Cooper JM, Allaway RJ, Gosline SJC, Guinney J, Carroll TJ, Le LQ. Spatiotemporal loss of NF1 in Schwann cell lineage leads to different types of cutaneous neurofibroma susceptible to modification by the Hippo pathway. Cancer Discovery. PMID 30348677 DOI: 10.1158/2159-8290.Cd-18-0151  1
2018 Li Y, Wang XE, Bender MF, Yang R, Cozine TJ, Atallah KM, Arnold F, Cooper JW, Lei QP. Overcoming the Multiple-Monomeric-Peak Profile of Broadly Neutralizing HIV-1 Antibody 10E8 with a Unique Size-Exclusion-Chromatography Method. Analytical Chemistry. PMID 30346697 DOI: 10.1021/acs.analchem.8b03594  1
2018 Cooper JJ, Johnson M, Radcliffe J, Fisher J. Optimal Emotional Profiles for Peak Performance in Strength and Conditioning. Journal of Strength and Conditioning Research. PMID 30299388 DOI: 10.1519/JSC.0000000000002832  0.01
2018 Hino K, Simó S, Cooper JA. Comparative analysis of cul5 and rbx2 expression in the developing and adult murine brain and their essentiality during mouse embryogenesis. Developmental Dynamics : An Official Publication of the American Association of Anatomists. PMID 30269386 DOI: 10.1002/dvdy.24675  0.01
2018 Adjogatse E, Erskine P, Wells SA, Kelly JM, Wilden JD, Chan AWE, Selwood D, Coker A, Wood S, Cooper JB. Structure and function of L-threonine-3-dehydrogenase from the parasitic protozoan Trypanosoma brucei revealed by X-ray crystallography and geometric simulations. Acta Crystallographica. Section D, Structural Biology. 74: 861-876. PMID 30198897 DOI: 10.1107/S2059798318009208  1
2018 Nordenfelt P, Cooper JM, Hochstetter A. Matrix-masking to balance nonuniform illumination in microscopy. Optics Express. 26: 17279-17288. PMID 30119541  1
2018 Clarke D, Pearse Y, Kan SH, Le SQ, Sanghez V, Cooper JD, Dickson PI, Iacovino M. Genetically Corrected iPSC-Derived Neural Stem Cell Grafts Deliver Enzyme Replacement to Affect CNS Disease in Sanfilippo B Mice. Molecular Therapy. Methods & Clinical Development. 10: 113-127. PMID 30101150 DOI: 10.1016/j.omtm.2018.06.005  1
2018 Lange J, Haslett LJ, Lloyd-Evans E, Pocock JM, Sands MS, Williams BP, Cooper JD. Compromised astrocyte function and survival negatively impact neurons in infantile neuronal ceroid lipofuscinosis. Acta Neuropathologica Communications. 6: 74. PMID 30089511 DOI: 10.1186/s40478-018-0575-4  1
2018 Demčenko A, Wilson R, Cooper JM, Mazilu M, Volker AWF. Ultrasonic waves in uniaxially stressed multilayered and one-dimensional phononic structures: Guided and Floquet wave analysis. The Journal of the Acoustical Society of America. 144: 81. PMID 30075637 DOI: 10.1121/1.5044528  1
2018 Daly AC, Gavaghan D, Cooper J, Tavener S. Inference-based assessment of parameter identifiability in nonlinear biological models. Journal of the Royal Society, Interface. 15. PMID 30021928 DOI: 10.1098/Rsif.2018.0318  1
2018 Massaro G, Mattar CNZ, Wong AMS, Sirka E, Buckley SMK, Herbert BR, Karlsson S, Perocheau DP, Burke D, Heales S, Richard-Londt A, Brandner S, Huebecker M, Priestman DA, Platt FM, ... Cooper JD, et al. Fetal gene therapy for neurodegenerative disease of infants. Nature Medicine. PMID 30013199 DOI: 10.1038/S41591-018-0106-7  1
2018 Xu G, Zhao H, Reboud J, Cooper JM. Cycling of Rational Hybridization Chain Reaction to Enable Enzyme-Free DNA-Based Clinical Diagnosis. Acs Nano. PMID 29965722 DOI: 10.1021/acsnano.8b03183  1
2018 Lotfi P, Tse DY, di Ronza A, Seymour ML, Martano G, Cooper JD, Pereira FA, Passafaro M, Wu SM, Sardiello M. Trehalose reduces retinal degeneration, neuroinflammation and storage burden caused by a lysosomal hydrolase deficiency. Autophagy. PMID 29916295 DOI: 10.1080/15548627.2018.1474313  0.01
2018 Pluta P, Roversi P, Bernardo-Seisdedos G, Rojas AL, Cooper JB, Gu S, Pickersgill RW, Millet O. Structural basis of pyrrole polymerization in human porphobilinogen deaminase. Biochimica Et Biophysica Acta. PMID 29908816 DOI: 10.1016/J.Bbagen.2018.06.013  0.01
2018 Cooper DE, Dunn WR, Huston LJ, Haas AK, Spindler KP, Allen CR, Anderson AF, DeBerardino TM, Lantz BBA, Mann B, Stuart MJ, Albright JP, Amendola AN, Andrish JT, ... Cooper JM, et al. Physiologic Preoperative Knee Hyperextension Is a Predictor of Failure in an Anterior Cruciate Ligament Revision Cohort: A Report From the MARS Group. The American Journal of Sports Medicine. 363546518777732. PMID 29882693 DOI: 10.1177/0363546518777732  1
2018 Kesireddy N, Kheireldin RK, Lu A, Cooper J, Liu J, Ebraheim NA. Current treatment of congenital pseudarthrosis of the tibia: a systematic review and meta-analysis. Journal of Pediatric Orthopedics. Part B. PMID 29878977 DOI: 10.1097/BPB.0000000000000524  0.01
2018 Demcenko A, Mazilu M, Wilson R, Volker AWF, Cooper JM. Hyperelastic Tuning of One-Dimensional Phononic Band Gaps Using Directional Stress. Ieee Transactions On Ultrasonics, Ferroelectrics, and Frequency Control. 65: 1056-1061. PMID 29856723 DOI: 10.1109/TUFFC.2018.2821440  1
2018 Daly AC, Clerx M, Beattie KA, Cooper J, Gavaghan DJ, Mirams GR. Reproducible model development in the cardiac electrophysiology Web Lab. Progress in Biophysics and Molecular Biology. PMID 29842853 DOI: 10.1016/j.pbiomolbio.2018.05.011  1
2018 Cox LL, Cox TC, Moreno Uribe LM, Zhu Y, Richter CT, Nidey N, Standley JM, Deng M, Blue E, Chong JX, Yang Y, Carstens RP, Anand D, Lachke SA, Smith JD, ... Cooper JA, et al. Mutations in the Epithelial Cadherin-p120-Catenin Complex Cause Mendelian Non-Syndromic Cleft Lip with or without Cleft Palate. American Journal of Human Genetics. PMID 29805042 DOI: 10.1016/J.Ajhg.2018.04.009  1
2018 Ivleva VB, Schneck NA, Gollapudi D, Arnold F, Cooper JW, Lei QP. Investigation of Sequence Clipping and Structural Heterogeneity of an HIV Broadly Neutralizing Antibody by a Comprehensive LC-MS Analysis. Journal of the American Society For Mass Spectrometry. PMID 29736600 DOI: 10.1007/s13361-018-1968-0  1
2018 Gozdecka M, Meduri E, Mazan M, Tzelepis K, Dudek M, Knights AJ, Pardo M, Yu L, Choudhary JS, Metzakopian E, Iyer V, Yun H, Park N, Varela I, Bautista R, ... Cooper J, et al. UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs. Nature Genetics. PMID 29736013 DOI: 10.1038/S41588-018-0114-Z  1
2018 Guo J, Coker AR, Wood SP, Cooper JB, Keegan RM, Ahmad N, Muhammad MA, Rashid N, Akhtar M. Structure and function of the type III pullulan hydrolase from Thermococcus kodakarensis. Acta Crystallographica. Section D, Structural Biology. 74: 305-314. PMID 29652257 DOI: 10.1107/S2059798318001754  1
2018 Bergmann FT, Cooper J, König M, Moraru I, Nickerson D, Novère NL, Olivier BG, Sahle S, Smith L, Waltemath D. Simulation Experiment Description Markup Language (SED-ML) Level 1 Version 3 (L1V3). Journal of Integrative Bioinformatics. PMID 29550789 DOI: 10.1515/jib-2017-0086  0.01
2018 Li Q, Ingram L, Kim S, Beharry Z, Cooper JA, Cai H. Paracrine Fibroblast Growth Factor Initiates Oncogenic Synergy with Epithelial FGFR/Src Transformation in Prostate Tumor Progression. Neoplasia (New York, N.Y.). 20: 233-243. PMID 29444487 DOI: 10.1016/j.neo.2018.01.006  0.01
2018 Yuan X, Song Y, Song Y, Xu J, Wu Y, Glidle A, Cusack M, Ijaz UZ, Cooper JM, Huang WE, Yin H. Effect of laser irradiation on cell function and its implications in Raman spectroscopy. Applied and Environmental Microbiology. PMID 29427427 DOI: 10.1128/AEM.02508-17  1
2018 Bennett M, Cantini M, Reboud J, Cooper JM, Roca-Cusachs P, Salmeron-Sanchez M. Molecular clutch drives cell response to surface viscosity. Proceedings of the National Academy of Sciences of the United States of America. PMID 29358406 DOI: 10.1073/pnas.1710653115  1
2018 Niemir N, Rouvière L, Besse A, Vanier MT, Dmytrus J, Marais T, Astord S, Puech JP, Panasyuk G, Cooper JD, Barkats M, Caillaud C. Intravenous administration of scAAV9-Hexb normalizes lifespan and prevents pathology in Sandhoff disease mice. Human Molecular Genetics. PMID 29325092 DOI: 10.1093/hmg/ddy012  0.01
2018 Yang Z, Xu G, Reboud J, Ali SA, Kaur G, McGiven J, Boby N, Gupta P, Chaudhuri P, Cooper JM. Rapid Veterinary Diagnosis of Bovine Reproductive Infectious Diseases from Semen using Paper-Origami DNA Microfluidics. Acs Sensors. PMID 29322764 DOI: 10.1021/acssensors.7b00825  1
2018 Le SQ, Kan SH, Clarke D, Sanghez V, Egeland M, Vondrak KN, Doherty TM, Vera MU, Iacovino M, Cooper JD, Sands MS, Dickson PI. A Humoral Immune Response Alters the Distribution of Enzyme Replacement Therapy in Murine Mucopolysaccharidosis Type I. Molecular Therapy. Methods & Clinical Development. 8: 42-51. PMID 29159202 DOI: 10.1016/j.omtm.2017.09.008  1
2017 Magnussen RA, Borchers JR, Pedroza AD, Huston LJ, Haas AK, Spindler KP, Wright RW, Kaeding CC, Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Lantz BA, ... ... Cooper JM, et al. Risk Factors and Predictors of Significant Chondral Surface Change From Primary to Revision Anterior Cruciate Ligament Reconstruction: A MOON and MARS Cohort Study. The American Journal of Sports Medicine. 363546517741484. PMID 29244532 DOI: 10.1177/0363546517741484  1
2017 Chung WJ, Daemen A, Cheng JH, Long JE, Cooper JE, Wang BE, Tran C, Singh M, Gnad F, Modrusan Z, Foreman O, Junttila MR. Kras mutant genetically engineered mouse models of human cancers are genomically heterogeneous. Proceedings of the National Academy of Sciences of the United States of America. PMID 29203670 DOI: 10.1073/Pnas.1708391114  1
2017 Simon G, Andrade MAB, Reboud J, Marques-Hueso J, Desmulliez MPY, Cooper JM, Riehle MO, Bernassau AL. Particle separation by phase modulated surface acoustic waves. Biomicrofluidics. 11: 054115. PMID 29152026 DOI: 10.1063/1.5001998  1
2017 Guo J, Coker AR, Wood SP, Cooper JB, Chohan SM, Rashid N, Akhtar M. Structure and function of the thermostable L-asparaginase from Thermococcus kodakarensis. Acta Crystallographica. Section D, Structural Biology. 73: 889-895. PMID 29095161 DOI: 10.1107/S2059798317014711  1
2017 Guo J, Erskine P, Coker AR, Wood SP, Cooper JB. Structural studies of domain movement in active-site mutants of porphobilinogen deaminase from Bacillus megaterium. Acta Crystallographica. Section F, Structural Biology Communications. 73: 612-620. PMID 29095155 DOI: 10.1107/S2053230X17015436  1
2017 Parviainen L, Dihanich S, Anderson GW, Wong AM, Brooks HR, Abeti R, Rezaie P, Lalli G, Pope S, Heales SJ, Mitchison HM, Williams BP, Cooper JD. Glial cells are functionally impaired in juvenile neuronal ceroid lipofuscinosis and detrimental to neurons. Acta Neuropathologica Communications. 5: 74. PMID 29041969 DOI: 10.1186/S40478-017-0476-Y  1
2017 Barrett MP, Cooper JM, Regnault C, Holm SH, Beech JP, Tegenfeldt JO, Hochstetter A. Microfluidics-Based Approaches to the Isolation of African Trypanosomes. Pathogens (Basel, Switzerland). 6. PMID 28981471 DOI: 10.3390/pathogens6040047  1
2017 Llavero Hurtado M, Fuller HR, Wong AMS, Eaton SL, Gillingwater TH, Pennetta G, Cooper JD, Wishart TM. Proteomic mapping of differentially vulnerable pre-synaptic populations identifies regulators of neuronal stability in vivo. Scientific Reports. 7: 12412. PMID 28963550 DOI: 10.1038/s41598-017-12603-0  1
2017 Daly AC, Cooper J, Gavaghan DJ, Holmes C. Comparing two sequential Monte Carlo samplers for exact and approximate Bayesian inference on biological models. Journal of the Royal Society, Interface. 14. PMID 28931636 DOI: 10.1098/rsif.2017.0340  1
2017 Paterson DJ, Tassieri M, Reboud J, Wilson R, Cooper JM. Lipid topology and electrostatic interactions underpin lytic activity of linear cationic antimicrobial peptides in membranes. Proceedings of the National Academy of Sciences of the United States of America. PMID 28931578 DOI: 10.1073/pnas.1704489114  1
2017 Pilling C, Cooper JA. SOCS2 Binds to and Regulates EphA2 through Multiple Mechanisms. Scientific Reports. 7: 10838. PMID 28883622 DOI: 10.1038/s41598-017-11040-3  1
2017 Gollapudi D, Wycuff DL, Schwartz RM, Cooper JW, Cheng KC. Development of high-throughput and high sensitivity capillary gel electrophoresis platform method for Western, Eastern, and Venezuelan equine encephalitis (WEVEE) virus like particles (VLPs) purity determination and characterization. Electrophoresis. PMID 28842921 DOI: 10.1002/elps.201700217  1
2017 Dovey OM, Cooper JL, Mupo A, Grove CS, Lynn C, Conte N, Andrews RM, Pacharne S, Tzelepis K, Vijayabaskar MS, Green P, Rad R, Arends M, Wright P, Yusa K, et al. Molecular synergy underlies the co-occurrence patterns and phenotype of NPM1-mutant acute myeloid leukemia. Blood. PMID 28835438 DOI: 10.1182/blood-2017-01-760595  1
2017 Yang Z, Xu G, Reboud J, Kasprzyk-Hordern B, Cooper JM. Monitoring Genetic Population Biomarkers with Wastewater-Based Epidemiology. Analytical Chemistry. PMID 28814081 DOI: 10.1021/acs.analchem.7b02257  1
2017 Lynch AD, Chmielewski T, Bailey L, Stuart M, Cooper J, Coady C, Sgroi T, Owens J, Schenck R, Whelan D, Musahl V, Irrgang J. Current Concepts and Controversies in Rehabilitation After Surgery for Multiple Ligament Knee Injury. Current Reviews in Musculoskeletal Medicine. PMID 28779476 DOI: 10.1007/S12178-017-9425-4  0.01
2017 Pal D, Boby N, Kumar S, Kaur G, Ali SA, Reboud J, Shrivastava S, Gupta PK, Cooper JM, Chaudhuri P. Visual detection of Brucella in bovine biological samples using DNA-activated gold nanoparticles. Plos One. 12: e0180919. PMID 28719613 DOI: 10.1371/journal.pone.0180919  1
2017 Cooper JM, Ou YH, McMillan E, Vaden RM, Zaman A, Bodemann BO, Makkar G, Posner BA, White M. TBK1 Provides Context-Selective Support of the Activated AKT/mTOR Pathway in Lung Cancer. Cancer Research. PMID 28716898 DOI: 10.1158/0008-5472.CAN-17-0829  0.01
2017 Allen CR, Anderson AF, Cooper DE, DeBerardino TM, Dunn WR, Haas AK, Huston LJ, Lantz BBA, Mann B, Nwosu SK, Spindler KP, Stuart MJ, Wright RW, Albright JP, ... Cooper JM, et al. Surgical Predictors of Clinical Outcomes After Revision Anterior Cruciate Ligament Reconstruction. The American Journal of Sports Medicine. 363546517712952. PMID 28696164 DOI: 10.1177/0363546517712952  1
2017 Shyng C, Nelvagal HR, Dearborn JT, Tyynelä J, Schmidt RE, Sands MS, Cooper JD. Synergistic effects of treating the spinal cord and brain in CLN1 disease. Proceedings of the National Academy of Sciences of the United States of America. PMID 28673981 DOI: 10.1073/Pnas.1701832114  1
2017 Cooper JD, Nelvagal HR. Progress toward Fulfilling the Potential of Immunomodulation in Childhood Neurodegeneration? Molecular Therapy : the Journal of the American Society of Gene Therapy. PMID 28625570 DOI: 10.1016/j.ymthe.2017.06.006  1
2016 Kasbaoui N, Cooper J, Mills DS, Burman O. Effects of Long-Term Exposure to an Electronic Containment System on the Behaviour and Welfare of Domestic Cats. Plos One. 11: e0162073. PMID 27602572 DOI: 10.1371/Journal.Pone.0162073  1
2016 Chielo LI, Pike T, Cooper J. Ranging Behaviour of Commercial Free-Range Laying Hens. Animals : An Open Access Journal From Mdpi. 6. PMID 27128946 DOI: 10.3390/Ani6050028  1
2016 Clarke T, Mills D, Cooper J. “Type” as central to perceptions of breed differences in behavior of domestic dog Society & Animals. 24: 467-485. DOI: 10.1163/15685306-12341422  1
2014 Cooper JJ, Cracknell N, Hardiman J, Wright H, Mills D. The welfare consequences and efficacy of training pet dogs with remote electronic training collars in comparison to reward based training. Plos One. 9: e102722. PMID 25184218 DOI: 10.1371/Journal.Pone.0102722  1
2010 Ligout S, Wright H, Driel Kv, Gladwell F, Mills DS, Cooper JJ. Reliability of salivary cortisol measures in dogs in training context Journal of Veterinary Behavior-Clinical Applications and Research. 5: 49. DOI: 10.1016/J.Jveb.2009.09.027  1
2010 Cooper J. The Behavioural Biology of Dogs, P. Jensen (Ed.). CABI, Wallingford, UK (2007), 288 pp., £35 - €55 - $70 (Paperback), ISBN: 978-1-8459-3187-2 Applied Animal Behaviour Science. 122: 136-138. DOI: 10.1016/J.Applanim.2009.12.001  0.01
2009 Freire R, Buckley P, Cooper J. Effects of different forms of exercise on post inhibitory rebound and unwanted behaviour in stabled horses. Equine Veterinary Journal. 41: 487-492. PMID 19642410 DOI: 10.2746/095777309X383883  0.01
2007 Albentosa MJ, Cooper JJ, Luddem T, Redgate SE, Elson HA, Walker AW. Evaluation of the effects of cage height and stocking density on the behaviour of laying hens in furnished cages British Poultry Science. 48: 1-11. PMID 17364534 DOI: 10.1080/00071660601156479  1
2005 Fukuzawa M, Mills DS, Cooper JJ. The effect of human command phonetic characteristics on auditory cognition in dogs (Canis familiaris). Journal of Comparative Psychology (Washington, D.C. : 1983). 119: 117-20. PMID 15740436 DOI: 10.1037/0735-7036.119.1.117  1
2005 Rodenburg TB, Bracke MBM, Berk J, Cooper J, Faure JM, Guémené D, Guy G, Harlander A, Jones T, Knierim U, Kuhnt K, Pingel H, Reiter K, Serviére J, Ruis MAW. Welfare of ducks in European duck husbandry systems Worlds Poultry Science Journal. 61: 633-646. DOI: 10.1079/Wps200575  0.01
2005 Fukuzawa M, Mills DS, Cooper JJ. More than just a word: Non-semantic command variables affect obedience in the domestic dog (Canis familiaris) Applied Animal Behaviour Science. 91: 129-141. DOI: 10.1016/J.Applanim.2004.08.025  1
2003 Cooper JJ, Ashton C, Bishop S, West R, Mills DS, Young RJ. Clever hounds: Social cognition in the domestic dog (Canis familiaris) Applied Animal Behaviour Science. 81: 229-244. DOI: 10.1016/S0168-1591(02)00284-8  1
2002 Cairns MC, Cooper JJ, Davidson HPB, Mills DS. Association in horses of orosensory characteristics of foods with their post-ingestive consequences Animal Science. 75: 257-265. DOI: 10.1017/S1357729800053017  1
2002 McAfee LM, Mills DS, Cooper JJ. The use of mirrors for the control of stereotypic weaving behaviour in the stabled horse Applied Animal Behaviour Science. 78: 159-173. DOI: 10.1016/S0168-1591(02)00086-2  1
2000 Mills D, Eckley S, Cooper JJ. Thoroughbred bedding preferences, associated behaviour differences and their implications for equine welfare Animal Science. 70: 95-106. DOI: 10.1017/S1357729800051638  1
1998 Cooper J, Mason G, Raj M. Determination of the aversion of farmed mink (Mustela vison) to carbon dioxide. Veterinary Record. 143: 359-361. PMID 9800303 DOI: 10.1136/Vr.143.13.359  0.01
1997 Cooper JJ, Appleby MC. Motivational aspects of individual variation in response to nestboxes by laying hens Animal Behaviour. 54: 1245-53. PMID 9398377 DOI: 10.1006/anbe.1997.0521  1
1996 Cooper JJ, Appleby MC. Demand for nest boxes in laying hens. Behavioural Processes. 36: 171-82. PMID 24896684 DOI: 10.1016/0376-6357(95)00027-5  1
1996 Cooper JJ, Appleby MC. Individual variation in prelaying behaviour and the incidence of floor eggs. British Poultry Science. 37: 245-53. PMID 8773834 DOI: 10.1080/00071669608417856  1
1996 Cooper J, Jackson R. A comparison of the feeding behaviour of sheep in straw yards and on slats Applied Animal Behaviour Science. 49: 99. DOI: 10.1016/0168-1591(96)87691-X  0.01
1995 Cooper JJ, Appleby MC. Nesting behaviour of hens: Effects of experience on motivation Applied Animal Behaviour Science. 42: 283-295. DOI: 10.1016/0168-1591(94)00543-N  1
1990 Cooper J. A behavioural analysis of stereotypies in the bank vole (Clethrionomys glareolus) Applied Animal Behaviour Science. 26: 285. DOI: 10.1016/0168-1591(90)90147-6  0.01
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