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Jie Liu - Publications

Affiliations: 
2019- University of Wisconsin, Madison, Madison, WI 
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Liu J, Zhong X. Population epigenetics: DNA methylation in the plant omics era. Plant Physiology. PMID 38366882 DOI: 10.1093/plphys/kiae089  0.709
2024 Liu J, Zhong X. Epiallelic variation of non-coding RNA genes and their phenotypic consequences. Nature Communications. 15: 1375. PMID 38355746 DOI: 10.1038/s41467-024-45771-5  0.707
2023 Chen J, Lu J, Liu J, Fang J, Zhong X, Song J. DNA conformational dynamics in the context-dependent non-CG CHH methylation by plant methyltransferase DRM2. The Journal of Biological Chemistry. 105433. PMID 37926286 DOI: 10.1016/j.jbc.2023.105433  0.693
2023 Liu ZW, Liu J, Liu F, Zhong X. Depositing centromere repeats induces heritable intragenic heterochromatin establishment and spreading in Arabidopsis. Nucleic Acids Research. PMID 37094065 DOI: 10.1093/nar/gkad306  0.769
2022 Fang J, Jiang J, Leichter SM, Liu J, Biswal M, Khudaverdyan N, Zhong X, Song J. Mechanistic basis for maintenance of CHG DNA methylation in plants. Nature Communications. 13: 3877. PMID 35790763 DOI: 10.1038/s41467-022-31627-3  0.747
2022 Jian L, Yan J, Liu J. De novo Domestication in the Multi-omics Era. Plant & Cell Physiology. PMID 35762778 DOI: 10.1093/pcp/pcac077  0.523
2022 Li X, Jia Y, Li J, Zhang P, Li T, Lu L, Yao H, Liu J, Zhu Z, Xu J. Novel and Potent Acetylcholinesterase Inhibitors for the Treatment of Alzheimer's Disease from Natural (±)-7,8-Dihydroxy-3-methyl-isochroman-4-one. Molecules (Basel, Switzerland). 27. PMID 35630563 DOI: 10.3390/molecules27103090  0.316
2021 Luo Y, Zhang M, Liu Y, Liu J, Li W, Chen G, Peng Y, Jin M, Wei W, Jian L, Yan J, Fernie AR, Yan J. Genetic variation in YIGE1 contributes to ear length and grain yield in maize. The New Phytologist. PMID 34837389 DOI: 10.1111/nph.17882  0.56
2021 Zhang Z, Liu J, Sun Y, Wang S, Xing X, Feng X, Pérez-Pérez JM, Li Y. Genome-wide high-resolution mapping of DNA methylation reveals epigenetic variation in the offspring of sexual and asexual propagation in Robinia pseudoacacia. Plant Cell Reports. PMID 34524479 DOI: 10.1007/s00299-021-02787-1  0.36
2021 Lu L, Hao K, Hong Y, Liu J, Zhu J, Jiang W, Zhu Z, Wang G, Peng Y. Magnesium Isoglycyrrhizinate Reduces Hepatic Lipotoxicity through Regulating Metabolic Abnormalities. International Journal of Molecular Sciences. 22. PMID 34070938 DOI: 10.3390/ijms22115884  0.31
2021 Lu L, Hao K, Hong Y, Liu J, Zhu J, Jiang W, Zhu Z, Wang G, Peng Y. Magnesium Isoglycyrrhizinate Reduces Hepatic Lipotoxicity through Regulating Metabolic Abnormalities. International Journal of Molecular Sciences. 22. PMID 34070938 DOI: 10.3390/ijms22115884  0.31
2021 Sun RZ, Liu J, Wang YY, Deng X. DNA methylation-mediated modulation of rapid desiccation tolerance acquisition and dehydration stress memory in the resurrection plant Boea hygrometrica. Plos Genetics. 17: e1009549. PMID 33930012 DOI: 10.1371/journal.pgen.1009549  0.316
2021 Fernie AR, Alseekh S, Liu J, Yan J. Using Precision Phenotyping to Inform de novo Domestication. Plant Physiology. PMID 33848336 DOI: 10.1093/plphys/kiab160  0.475
2021 Jiang J, Liu J, Sanders D, Qian S, Ren W, Song J, Liu F, Zhong X. UVR8 interacts with de novo DNA methyltransferase and suppresses DNA methylation in Arabidopsis. Nature Plants. PMID 33495557 DOI: 10.1038/s41477-020-00843-4  0.748
2020 Liu J, Fernie AR, Yan J. The Past, Present, and Future of Maize Improvement: Domestication, Genomics, and Functional Genomic Routes toward Crop Enhancement. Plant Communications. 1: 100010. PMID 33404535 DOI: 10.1016/j.xplc.2019.100010  0.555
2020 Chen J, Liu J, Jiang J, Qian S, Song J, Kabara R, Delo I, Serino G, Liu F, Hua Z, Zhong X. F-box protein CFK1 interacts with and degrades de novo DNA methyltransferase in Arabidopsis. The New Phytologist. PMID 33216996 DOI: 10.1111/nph.17103  0.761
2020 Liu J, Fernie AR, Yan J. Crop breeding - From experience-based selection to precision design. Journal of Plant Physiology. 256: 153313. PMID 33202375 DOI: 10.1016/j.jplph.2020.153313  0.501
2020 Huang J, Lu G, Liu L, Raihan MS, Xu J, Jian L, Zhao L, Tran TM, Zhang Q, Liu J, Li W, Wei C, Braun DM, Li Q, Fernie AR, et al. The kernel size-related quantitative trait locus qKW9 encodes a pentatricopeptide repeat protein that affects photosynthesis and grain filling. Plant Physiology. PMID 32482908 DOI: 10.1104/Pp.20.00374  0.518
2020 Jiang W, Xu S, Guo H, Lu L, Liu J, Wang G, Hao K. Magnesium isoglycyrrhizinate prevents the nonalcoholic hepatic steatosis via regulating energy homeostasis. Journal of Cellular and Molecular Medicine. PMID 32410294 DOI: 10.1111/jcmm.15230  0.316
2020 Liu H, Jian L, Xu J, Zhang Q, Zhang M, Jin M, Peng Y, Yan J, Han B, Liu J, Gao F, Liu X, Huang L, Wei W, Ding Y, et al. High-Throughput CRISPR/Cas9 Mutagenesis Streamlines Trait Gene Identification in Maize. The Plant Cell. PMID 32102844 DOI: 10.1105/Tpc.19.00934  0.582
2019 Zhan W, Liu J, Pan Q, Wang H, Yan S, Li K, Deng M, Li W, Liu N, Kong Q, Fernie AR, Yan J. An allele of ZmPORB2 encoding a protochlorophyllide oxidoreductase promotes tocopherol accumulation in both leaves and kernels of maize. The Plant Journal : For Cell and Molecular Biology. PMID 31169939 DOI: 10.1111/tpj.14432  0.541
2019 Yang N, Liu J, Gao Q, Gui S, Chen L, Yang L, Huang J, Deng T, Luo J, He L, Wang Y, Xu P, Peng Y, Shi Z, Lan L, et al. Genome assembly of a tropical maize inbred line provides insights into structural variation and crop improvement. Nature Genetics. 51: 1052-1059. PMID 31152161 DOI: 10.1038/S41588-019-0427-6  0.574
2019 Li K, Wen W, Alseekh S, Yang X, Guo H, Li W, Wang L, Pan Q, Zhan W, Liu J, Li Y, Wu X, Brotman Y, Willmitzer L, Li J, et al. Large-scale metabolite QTL analysis provides new insights for high-quality maize improvement. The Plant Journal : For Cell and Molecular Biology. PMID 30888713 DOI: 10.1111/Tpj.14317  0.558
2018 Liu N, Liu J, Li W, Pan Q, Liu J, Yang X, Yan J, Xiao Y. Intraspecific variation of residual heterozygosity and its utility for quantitative genetic studies in maize. Bmc Plant Biology. 18: 66. PMID 29673320 DOI: 10.1186/s12870-018-1287-4  0.551
2018 Wang H, Xu S, Fan Y, Liu N, Zhan W, Liu H, Xiao Y, Li K, Pan Q, Li W, Deng M, Liu J, Jin M, Yang X, Li J, et al. Beyond pathways: genetic dissection of tocopherol content in maize kernels by combining linkage and association analyses. Plant Biotechnology Journal. PMID 29356296 DOI: 10.1111/pbi.12889  0.582
2017 Peng Y, Shinde DN, Valencia AC, Mo JS, Rosenfeld J, Truitt Cho M, Chamberlin A, Li Z, Liu J, Gui B, Brockhage R, Basinger A, Alvarez-Leon B, Heydemann P, Magoulas PL, et al. Biallelic mutations in the ferredoxin reductase gene cause novel mitochondriopathy with optic atrophy. Human Molecular Genetics. PMID 29040572 DOI: 10.1093/Hmg/Ddx377  0.502
2017 Liu J, Huang J, Guo H, Lan L, Wang H, Xu Y, Yang X, Li W, Tong H, Xiao Y, Pan Q, Qiao F, Raihan MS, Liu H, Zhang X, et al. The conserved and unique genetic architecture of kernel size and weight in maize and rice. Plant Physiology. PMID 28811335 DOI: 10.1104/pp.17.00708  0.53
2017 Peng S, Yang S, Gao M, Liao X, Liu J, Yang C, Wu C, Yu W. P-Hint-Hunt: a deep parallelized whole genome DNA methylation detection tool. Bmc Genomics. 18: 134. PMID 28361696 DOI: 10.1186/s12864-017-3497-9  0.34
2016 Liu H, Wang F, Xiao Y, Tian Z, Wen W, Zhang X, Chen X, Liu N, Li W, Liu L, Liu J, Yan J, Liu J. MODEM: multi-omics data envelopment and mining in maize. Database : the Journal of Biological Databases and Curation. 2016. PMID 27504011 DOI: 10.1093/database/baw117  0.567
2016 Liu H, Wang F, Xiao Y, Tian Z, Wen W, Zhang X, Chen X, Liu N, Li W, Liu L, Liu J, Yan J, Liu J. MODEM: multi-omics data envelopment and mining in maize. Database : the Journal of Biological Databases and Curation. 2016. PMID 27504011 DOI: 10.1093/database/baw117  0.567
2016 Liu H, Luo X, Niu L, Xiao Y, Chen L, Liu J, Wang X, Jin M, Li W, Zhang Q, Yan J. Distant eQTLs and non-coding sequences play critical roles in regulating gene expression and quantitative trait variation in maize. Molecular Plant. PMID 27381443 DOI: 10.1016/j.molp.2016.06.016  0.57
2016 Liu H, Luo X, Niu L, Xiao Y, Chen L, Liu J, Wang X, Jin M, Li W, Zhang Q, Yan J. Distant eQTLs and non-coding sequences play critical roles in regulating gene expression and quantitative trait variation in maize. Molecular Plant. PMID 27381443 DOI: 10.1016/j.molp.2016.06.016  0.57
2016 Raihan MS, Liu J, Huang J, Guo H, Pan Q, Yan J. Multi-environment QTL analysis of grain morphology traits and fine mapping of a kernel-width QTL in Zheng58 × SK maize population. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27154588 DOI: 10.1007/s00122-016-2717-z  0.55
2016 Raihan MS, Liu J, Huang J, Guo H, Pan Q, Yan J. Multi-environment QTL analysis of grain morphology traits and fine mapping of a kernel-width QTL in Zheng58 × SK maize population. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 27154588 DOI: 10.1007/s00122-016-2717-z  0.55
2015 Xiao Y, Tong H, Yang X, Xu S, Pan Q, Qiao F, Raihan MS, Luo Y, Liu H, Zhang X, Yang N, Wang X, Deng M, Jin M, Zhao L, ... ... Liu J, et al. Genome-wide dissection of the maize ear genetic architecture using multiple populations. The New Phytologist. PMID 26715032 DOI: 10.1111/nph.13814  0.557
2015 Xiao Y, Tong H, Yang X, Xu S, Pan Q, Qiao F, Raihan MS, Luo Y, Liu H, Zhang X, Yang N, Wang X, Deng M, Jin M, Zhao L, ... ... Liu J, et al. Genome-wide dissection of the maize ear genetic architecture using multiple populations. The New Phytologist. PMID 26715032 DOI: 10.1111/nph.13814  0.557
2015 Liu J, Deng M, Guo H, Raihan S, Luo J, Xu Y, Dong X, Yan J. Maize orthologs of rice GS5 and their trans-regulator are associated with kernel development. Journal of Integrative Plant Biology. PMID 26282053 DOI: 10.1111/jipb.12421  0.566
2015 Liu H, Wang X, Warburton ML, Wen W, Jin M, Deng M, Liu J, Tong H, Pan Q, Yang X, Yan J. Genomic, Transcriptomic, and Phenomic Variation Reveals the Complex Adaptation of Modern Maize Breeding. Molecular Plant. 8: 871-84. PMID 25620769 DOI: 10.1016/j.molp.2015.01.016  0.554
2014 Yang N, Lu Y, Yang X, Huang J, Zhou Y, Ali F, Wen W, Liu J, Li J, Yan J. Genome wide association studies using a new nonparametric model reveal the genetic architecture of 17 agronomic traits in an enlarged maize association panel. Plos Genetics. 10: e1004573. PMID 25211220 DOI: 10.1371/journal.pgen.1004573  0.549
2014 Wen W, Li D, Li X, Gao Y, Li W, Li H, Liu J, Liu H, Chen W, Luo J, Yan J. Metabolome-based genome-wide association study of maize kernel leads to novel biochemical insights. Nature Communications. 5: 3438. PMID 24633423 DOI: 10.1038/ncomms4438  0.575
2013 Gao X, Cao D, Liu J, Wang X, Geng S, Liu B, Shi D. Tissue-specific and cation/anion-specific DNA methylation variations occurred in C. virgata in response to salinity stress. Plos One. 8: e78426. PMID 24223802 DOI: 10.1371/journal.pone.0078426  0.317
2013 Li H, Peng Z, Yang X, Wang W, Fu J, Wang J, Han Y, Chai Y, Guo T, Yang N, Liu J, Warburton ML, Cheng Y, Hao X, Zhang P, et al. Genome-wide association study dissects the genetic architecture of oil biosynthesis in maize kernels. Nature Genetics. 45: 43-50. PMID 23242369 DOI: 10.1038/ng.2484  0.51
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