Mitch Doktycz - Publications

Affiliations: 
Biological and Nanoscale Systems Group, Bioscience Division Oak Ridge National Laboratory, Oak Ridge, TN, United States 

115 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Mou Z, Eakes J, Cooper CJ, Foster CM, Standaert RF, Podar M, Doktycz MJ, Parks JM. Machine Learning-based Prediction of Enzyme Substrate Scope: Application to Bacterial Nitrilases. Proteins. PMID 33118210 DOI: 10.1002/prot.26019  0.52
2019 Garcia D, Cheng X, Land ML, Standaert RF, Morrell-Falvey JL, Doktycz MJ. Computationally-Guided Discovery and Experimental Validation of Indole-3-Acetic Acid Synthesis Pathways. Acs Chemical Biology. PMID 31693336 DOI: 10.1021/Acschembio.9B00725  0.52
2019 Uehling JK, Entler MR, Meredith HR, Millet LJ, Timm CM, Aufrecht JA, Bonito GM, Engle NL, Labbé JL, Doktycz MJ, Retterer ST, Spatafora JW, Stajich JE, Tschaplinski TJ, Vilgalys RJ. Microfluidics and Metabolomics Reveal Symbiotic Bacterial-Fungal Interactions Between and Include Metabolite Exchange. Frontiers in Microbiology. 10: 2163. PMID 31632357 DOI: 10.3389/Fmicb.2019.02163  0.52
2019 Patabadige DEW, Millet LJ, Aufrecht JA, Shankles PG, Standaert RF, Retterer ST, Doktycz MJ. Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous interfaces. Scientific Reports. 9: 10272. PMID 31312009 DOI: 10.1038/S41598-019-46538-5  0.52
2019 Aufrecht JA, Fowlkes JD, Bible AN, Morrell-Falvey J, Doktycz MJ, Retterer ST. Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic porous network. Plos One. 14: e0218316. PMID 31246972 DOI: 10.1371/Journal.Pone.0218316  0.52
2019 Millet LJ, Aufrecht J, Labbé J, Uehling J, Vilgalys R, Estes ML, Miquel Guennoc C, Deveau A, Olsson S, Bonito G, Doktycz MJ, Retterer ST. Increasing access to microfluidics for studying fungi and other branched biological structures. Fungal Biology and Biotechnology. 6: 1. PMID 31198578 DOI: 10.1186/s40694-019-0071-z  0.52
2018 Garcia DC, Mohr BP, Dovgan JT, Hurst GB, Standaert RF, Doktycz MJ. Elucidating the potential of crude cell extracts for producing pyruvate from glucose. Synthetic Biology (Oxford, England). 3: ysy006. PMID 32995514 DOI: 10.1093/Synbio/Ysy006  0.52
2018 Hasim S, Allison DP, Mendez B, Farmer AT, Pelletier DA, Retterer ST, Campagna SR, Reynolds TB, Doktycz MJ. Elucidating Duramycin's Bacterial Selectivity and Mode of Action on the Bacterial Cell Envelope. Frontiers in Microbiology. 9: 219. PMID 29491859 DOI: 10.3389/Fmicb.2018.00219  0.52
2018 Retterer ST, Morrell-Falvey JL, Doktycz MJ. Nano-Enabled Approaches to Chemical Imaging in Biosystems. Annual Review of Analytical Chemistry (Palo Alto, Calif.). PMID 29490189 DOI: 10.1146/Annurev-Anchem-061417-125635  0.52
2018 Estenson K, Hurst GB, Standaert RF, Bible AN, Garcia D, Chourey K, Doktycz MJ, Morrell-Falvey JL. Characterization of indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343. Journal of Proteome Research. PMID 29464956 DOI: 10.1021/Acs.Jproteome.7B00708  0.52
2017 Ievlev AV, Belianinov A, Jesse S, Allison DP, Doktycz MJ, Retterer ST, Kalinin SV, Ovchinnikova OS. Automated Interpretation and Extraction of Topographic Information from Time of Flight Secondary Ion Mass Spectrometry Data. Scientific Reports. 7: 17099. PMID 29213083 DOI: 10.1038/S41598-017-17049-Y  0.52
2017 Hurst GB, Asano KG, Doktycz CJ, Consoli EJ, Doktycz WL, Foster CM, Morrell-Falvey JL, Standaert RF, Doktycz MJ. Proteomics-Based Tools for Evaluation of Cell-Free Protein Synthesis. Analytical Chemistry. PMID 29039646 DOI: 10.1021/Acs.Analchem.7B02555  0.52
2017 Aufrecht JA, Ryan JM, Hasim S, Allison DP, Nebenführ A, Doktycz MJ, Retterer ST. Imaging the Root Hair Morphology of Arabidopsis Seedlings in a Two-layer Microfluidic Platform. Journal of Visualized Experiments : Jove. PMID 28829431 DOI: 10.3791/55971  0.52
2016 Hasim S, Allison DP, Retterer ST, Hopke A, Wheeler RT, Doktycz MJ, Reynolds TB. ß-glucan unmasking in some Candida albicans mutants correlates with increases in cell wall surface roughness and decreases in cell wall elasticity. Infection and Immunity. PMID 27849179 DOI: 10.1128/Iai.00601-16  0.52
2016 Hansen RR, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST. Correction: Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. Plos One. 11: e0160135. PMID 27441627 DOI: 10.1371/journal.pone.0160135  0.52
2016 Mohr BP, Retterer ST, Doktycz MJ. While-you-wait proteins? Producing biomolecules at the point of need. Expert Review of Proteomics. PMID 27402489 DOI: 10.1080/14789450.2016.1209415  0.52
2016 Timm CM, Pelletier DA, Jawdy SS, Gunter LE, Henning JA, Engle N, Aufrecht J, Gee E, Nookaew I, Yang Z, Lu TY, Tschaplinski TJ, Doktycz MJ, Tuskan GA, Weston DJ. Two Poplar-Associated Bacterial Isolates Induce Additive Favorable Responses in a Constructed Plant-Microbiome System. Frontiers in Plant Science. 7: 497. PMID 27200001 DOI: 10.3389/Fpls.2016.00497  0.52
2016 Hansen RH, Timm AC, Timm CM, Bible AN, Morrell-Falvey JL, Pelletier DA, Simpson ML, Doktycz MJ, Retterer ST. Stochastic Assembly of Bacteria in Microwell Arrays Reveals the Importance of Confinement in Community Development. Plos One. 11: e0155080. PMID 27152511 DOI: 10.1371/Journal.Pone.0155080  0.52
2016 Bible AN, Fletcher SJ, Pelletier DA, Schadt CW, Jawdy SS, Weston DJ, Engle NL, Tschaplinski T, Masyuko R, Polisetti S, Bohn PW, Coutinho TA, Doktycz MJ, Morrell-Falvey JL. A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization. Frontiers in Microbiology. 7: 491. PMID 27148182 DOI: 10.3389/Fmicb.2016.00491  0.52
2016 Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Microreactors: Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care (Small 6/2016). Small (Weinheim An Der Bergstrasse, Germany). 12: 690. PMID 26848723 DOI: 10.1002/Smll.201670027  0.52
2015 Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Toward Microfluidic Reactors for Cell-Free Protein Synthesis at the Point-of-Care. Small (Weinheim An Der Bergstrasse, Germany). PMID 26690885 DOI: 10.1002/Smll.201502764  0.52
2015 Timm CM, Hansen RR, Doktycz MJ, Retterer ST, Pelletier DA. Microstencils to generate defined, multi-species patterns of bacteria. Biomicrofluidics. 9: 064103. PMID 26594264 DOI: 10.1063/1.4935938  0.52
2015 Shankles PG, Timm AC, Doktycz MJ, Retterer ST. Fabrication of nanoporous membranes for tuning microbial interactions and biochemical reactions. Journal of Vacuum Science and Technology. B, Nanotechnology & Microelectronics : Materials, Processing, Measurement, & Phenomena : Jvst B. 33: 06FM03. PMID 26543684 DOI: 10.1116/1.4932671  0.52
2015 Timm CM, Campbell AG, Utturkar SM, Jun SR, Parales RE, Tan WA, Robeson MS, Lu TY, Jawdy S, Brown SD, Ussery DW, Schadt CW, Tuskan GA, Doktycz MJ, Weston DJ, et al. Metabolic functions of Pseudomonas fluorescens strains from Populus deltoides depend on rhizosphere or endosphere isolation compartment. Frontiers in Microbiology. 6: 1118. PMID 26528266 DOI: 10.3389/Fmicb.2015.01118  0.52
2015 Jun SR, Wassenaar TM, Nookaew I, Hauser L, Wanchai V, Land M, Timm C, Lu TS, Schadt CW, Doktycz MJ, Pelletier DA, Ussery DW. Comparative genome analysis of Pseudomonas genomes including Populus-associated isolates. Applied and Environmental Microbiology. PMID 26519390 DOI: 10.1128/Aem.02612-15  0.52
2015 Nallathamby PD, Mortensen NP, Palko HA, Malfatti M, Smith C, Sonnett J, Doktycz MJ, Gu B, Roeder RK, Wang W, Retterer ST. New surface radiolabeling schemes of super paramagnetic iron oxide nanoparticles (SPIONs) for biodistribution studies. Nanoscale. 7: 6545-55. PMID 25790032 DOI: 10.1039/C4Nr06441K  0.52
2015 Millet LJ, Lucheon JD, Standaert RF, Retterer ST, Doktycz MJ. Modular microfluidics for point-of-care protein purifications. Lab On a Chip. 15: 1799-811. PMID 25740172 DOI: 10.1039/C5Lc00094G  0.52
2015 Polisetti S, Baig N, Bible A, Morrell-Falvey J, Doktycz M, Bohn PW. Using Raman spectroscopy and SERS for in situ studies of rhizosphere bacteria Proceedings of Spie - the International Society For Optical Engineering. 9550. DOI: 10.1117/12.2188647  0.52
2015 Timm AC, Shankles PG, Foster CM, Doktycz MJ, Retterer ST. Characterization of extended channel bioreactors for continuous-flow protein production Journal of Vacuum Science and Technology B: Nanotechnology and Microelectronics. 33. DOI: 10.1116/1.4932155  0.52
2015 Millet LJ, Doktycz MJ, Retterer ST. Nanofluidic interfaces in microfluidic networks Journal of Vacuum Science and Technology B: Nanotechnology and Microelectronics. 33. DOI: 10.1116/1.4931590  0.52
2014 Hansen RR, Shubert KR, Morrell-Falvey JL, Lokitz BS, Doktycz MJ, Retterer ST. Microstructured block copolymer surfaces for control of microbe adhesion and aggregation. Biosensors. 4: 63-75. PMID 25587410 DOI: 10.3390/Bios4010063  0.52
2014 Utturkar SM, Klingeman DM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA, Brown SD. Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences. Bioinformatics (Oxford, England). 30: 2709-16. PMID 24930142 DOI: 10.1093/Bioinformatics/Btu391  0.52
2014 Tschaplinski TJ, Plett JM, Engle NL, Deveau A, Cushman KC, Martin MZ, Doktycz MJ, Tuskan GA, Brun A, Kohler A, Martin F. Populus trichocarpa and Populus deltoides exhibit different metabolomic responses to colonization by the symbiotic fungus Laccaria bicolor. Molecular Plant-Microbe Interactions : Mpmi. 27: 546-56. PMID 24548064 DOI: 10.1094/MPMI-09-13-0286-R  0.52
2013 Iyer S, Karig DK, Norred SE, Simpson ML, Doktycz MJ. Multi-input regulation and logic with T7 promoters in cells and cell-free systems. Plos One. 8: e78442. PMID 24194933 DOI: 10.1371/journal.pone.0078442  0.52
2013 Wang W, Nallathamby PD, Foster CM, Morrell-Falvey JL, Mortensen NP, Doktycz MJ, Gu B, Retterer ST. Volume labeling with Alexa Fluor dyes and surface functionalization of highly sensitive fluorescent silica (SiO2) nanoparticles. Nanoscale. 5: 10369-75. PMID 24056530 DOI: 10.1039/C3Nr02639F  0.52
2013 Mortensen NP, Boisen N, Carey S, Kennel SJ, Fowlkes JD, Doktycz MJ, Nataro JP, Allison DP. Enteroaggregative Escherichia coli: surface protein dispersin increases bacterial uptake of ciprofloxacin. International Journal of Antimicrobial Agents. 42: 462-5. PMID 24011504 DOI: 10.1016/J.Ijantimicag.2013.07.007  0.52
2013 Hinestrosa JP, Sutton JE, Allison DP, Doktycz MJ, Messman JM, Retterer ST. Layer-by-layer templated assembly of silica at the nanoscale. Langmuir : the Acs Journal of Surfaces and Colloids. 29: 2193-9. PMID 23360298 DOI: 10.1021/La3042204  0.52
2013 Suresh AK, Pelletier DA, Doktycz MJ. Relating nanomaterial properties and microbial toxicity. Nanoscale. 5: 463-74. PMID 23203029 DOI: 10.1039/C2Nr32447D  0.52
2012 Lian M, Collier CP, Doktycz MJ, Retterer ST. Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator. Biomicrofluidics. 6: 44108. PMID 24198865 DOI: 10.1063/1.4765337  0.52
2012 Brown SD, Utturkar SM, Klingeman DM, Johnson CM, Martin SL, Land ML, Lu TY, Schadt CW, Doktycz MJ, Pelletier DA. Twenty-one genome sequences from Pseudomonas species and 19 genome sequences from diverse bacteria isolated from the rhizosphere and endosphere of Populus deltoides. Journal of Bacteriology. 194: 5991-3. PMID 23045501 DOI: 10.1128/Jb.01243-12  0.52
2012 Brown SD, Klingeman DM, Lu TY, Johnson CM, Utturkar SM, Land ML, Schadt CW, Doktycz MJ, Pelletier DA. Draft genome sequence of Rhizobium sp. strain PDO1-076, a bacterium isolated from Populus deltoides. Journal of Bacteriology. 194: 2383-4. PMID 22493196 DOI: 10.1128/Jb.00198-12  0.52
2012 Weston DJ, Pelletier DA, Morrell-Falvey JL, Tschaplinski TJ, Jawdy SS, Lu TY, Allen SM, Melton SJ, Martin MZ, Schadt CW, Karve AA, Chen JG, Yang X, Doktycz MJ, Tuskan GA. Pseudomonas fluorescens induces strain-dependent and strain-independent host plant responses in defense networks, primary metabolism, photosynthesis, and fitness. Molecular Plant-Microbe Interactions : Mpmi. 25: 765-78. PMID 22375709 DOI: 10.1094/Mpmi-09-11-0253  0.52
2012 Suresh AK, Pelletier DA, Wang W, Morrell-Falvey JL, Gu B, Doktycz MJ. Cytotoxicity induced by engineered silver nanocrystallites is dependent on surface coatings and cell types. Langmuir : the Acs Journal of Surfaces and Colloids. 28: 2727-35. PMID 22216981 DOI: 10.1021/La2042058  0.52
2012 Karig DK, Iyer S, Simpson ML, Doktycz MJ. Expression optimization and synthetic gene networks in cell-free systems. Nucleic Acids Research. 40: 3763-74. PMID 22180537 DOI: 10.1093/nar/gkr1191  0.52
2012 Siuti P, Retterer ST, Choi CK, Doktycz MJ. Enzyme reactions in nanoporous, picoliter volume containers. Analytical Chemistry. 84: 1092-7. PMID 22148720 DOI: 10.1021/Ac202726N  0.52
2012 Kumar A, Karig D, Neethirajan S, Suresh AK, Srijanto BR, Mukherjee PP, Retterer S, Doktycz MJ. Adhesion and formation of microbial biofilms in complex microfluidic devices Asme 2012 3rd International Conference On Micro/Nanoscale Heat and Mass Transfer, Mnhmt 2012. 79-84. DOI: 10.1115/MNHMT2012-75207  0.52
2011 Siuti P, Green C, Edwards AN, Doktycz MJ, Alexandre G. The chemotaxis-like Che1 pathway has an indirect role in adhesive cell properties of Azospirillum brasilense Fems Microbiology Letters. 323: 105-112. PMID 22092709 DOI: 10.1111/J.1574-6968.2011.02366.X  0.52
2011 Siuti P, Retterer ST, Doktycz MJ. Continuous protein production in nanoporous, picolitre volume containers. Lab On a Chip. 11: 3523-9. PMID 21879140 DOI: 10.1039/C1Lc20462A  0.52
2011 Allison DP, Sullivan CJ, Mortensen NP, Retterer ST, Doktycz M. Bacterial immobilization for imaging by atomic force microscopy. Journal of Visualized Experiments : Jove. PMID 21860374 DOI: 10.3791/2880  0.52
2011 Suresh AK, Doktycz MJ, Wang W, Moon JW, Gu B, Meyer HM, Hensley DK, Allison DP, Phelps TJ, Pelletier DA. Monodispersed biocompatible silver sulfide nanoparticles: facile extracellular biosynthesis using the γ-proteobacterium, Shewanella oneidensis. Acta Biomaterialia. 7: 4253-8. PMID 21798382 DOI: 10.1016/J.Actbio.2011.07.007  0.52
2011 Gottel NR, Castro HF, Kerley M, Yang Z, Pelletier DA, Podar M, Karpinets T, Uberbacher E, Tuskan GA, Vilgalys R, Doktycz MJ, Schadt CW. Distinct microbial communities within the endosphere and rhizosphere of Populus deltoides roots across contrasting soil types. Applied and Environmental Microbiology. 77: 5934-44. PMID 21764952 DOI: 10.1128/Aem.05255-11  0.52
2011 Karig DK, Siuti P, Dar RD, Retterer ST, Doktycz MJ, Simpson ML. Model for biological communication in a nanofabricated cell-mimic driven by stochastic resonance. Nano Communication Networks. 2: 39-49. PMID 21731597 DOI: 10.1016/J.Nancom.2011.03.001  0.52
2011 Suresh AK, Pelletier DA, Wang W, Broich ML, Moon JW, Gu B, Allison DP, Joy DC, Phelps TJ, Doktycz MJ. Biofabrication of discrete spherical gold nanoparticles using the metal-reducing bacterium Shewanella oneidensis. Acta Biomaterialia. 7: 2148-52. PMID 21241833 DOI: 10.1016/J.Actbio.2011.01.023  0.52
2011 Edwards AN, Siuti P, Bible AN, Alexandre G, Retterer ST, Doktycz MJ, Morrell-Falvey JL. Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy. Fems Microbiology Letters. 314: 131-9. PMID 21105907 DOI: 10.1111/J.1574-6968.2010.02156.X  0.52
2011 Kumar A, Mortensen NP, Mukherjee PP, Retterer ST, Doktycz MJ. Electric field induced bacterial flocculation of enteroaggregative Escherichia coli 042 Applied Physics Letters. 98. DOI: 10.1063/1.3600648  0.52
2010 Srijanto BR, Retterer ST, Fowlkes JD, Doktycz MJ. Nanostructured silicon membranes for control of molecular transport. Journal of Vacuum Science and Technology. B, Nanotechnology & Microelectronics : Materials, Processing, Measurement, & Phenomena : Jvst B. 28: C6PC6P48-C6PC6P52. PMID 24932436 DOI: 10.1116/1.3518911  0.52
2010 Pelletier DA, Suresh AK, Holton GA, McKeown CK, Wang W, Gu B, Mortensen NP, Allison DP, Joy DC, Allison MR, Brown SD, Phelps TJ, Doktycz MJ. Effects of engineered cerium oxide nanoparticles on bacterial growth and viability. Applied and Environmental Microbiology. 76: 7981-9. PMID 20952651 DOI: 10.1128/Aem.00650-10  0.52
2010 Allison DP, Mortensen NP, Sullivan CJ, Doktycz MJ. Atomic force microscopy of biological samples Wiley Interdisciplinary Reviews: Nanomedicine and Nanobiotechnology. 2: 618-634. PMID 20672388 DOI: 10.1002/wnan.104  0.52
2010 Choi CK, Fowlkes JD, Retterer ST, Siuti P, Iyer S, Doktycz MJ. Surface charge- and space-dependent transport of proteins in crowded environments of nanotailored posts. Acs Nano. 4: 3345-55. PMID 20515056 DOI: 10.1021/Nn901831Q  0.52
2010 Suresh AK, Pelletier DA, Wang W, Moon JW, Gu B, Mortensen NP, Allison DP, Joy DC, Phelps TJ, Doktycz MJ. Silver nanocrystallites: biofabrication using Shewanella oneidensis, and an evaluation of their comparative toxicity on gram-negative and gram-positive bacteria. Environmental Science & Technology. 44: 5210-5. PMID 20509652 DOI: 10.1021/Es903684R  0.52
2010 Retterer ST, Siuti P, Choi CK, Thomas DK, Doktycz MJ. Development and fabrication of nanoporous silicon-based bioreactors within a microfluidic chip. Lab On a Chip. 10: 1174-81. PMID 20390137 DOI: 10.1039/B921592A  0.52
2010 Wang W, Howe JY, Li Y, Qiu X, Joy DC, Paranthaman MP, Doktycz MJ, Gu B. A surfactant and template-free route for synthesizing ceria nanocrystals with tunable morphologies Journal of Materials Chemistry. 20: 7776-7781. DOI: 10.1039/c0jm00982b  0.52
2009 Siuti P, Retterer ST, Choi CK, Fowlkes JD, Doktycz MJ. Cell Free Translation in Engineered Picoliter Volume Containers. Annual Ornl Biomedical Science and Engineering Center Conference Ornl Biomedical Science and Engineering Center Conference. 2009: 1-4. PMID 21278819 DOI: 10.1109/BSEC.2009.5090477  0.52
2009 Edwards AN, Fowlkes JD, Owens ET, Standaert RF, Pelletier DA, Hurst GB, Doktycz MJ, Morrell-Falvey JL. An in vivo imaging-based assay for detecting protein interactions over a wide range of binding affinities. Analytical Biochemistry. 395: 166-77. PMID 19698693 DOI: 10.1016/J.Ab.2009.08.015  0.52
2009 Hildebrand M, Holton G, Joy DC, Doktycz MJ, Allison DP. Diverse and conserved nano- and mesoscale structures of diatom silica revealed by atomic force microscopy. Journal of Microscopy. 235: 172-87. PMID 19659911 DOI: 10.1111/J.1365-2818.2009.03198.X  0.52
2009 Fletcher BL, Fern JT, Rhodes K, McKnight TE, Fowlkes JD, Retterer ST, Keffer DJ, Simpson ML, Doktycz MJ. Effects of ultramicroelectrode dimensions on the electropolymerization of polypyrrole. Journal of Applied Physics. 105: 124312. PMID 19657404 DOI: 10.1063/1.3152633  0.52
2009 Mortensen NP, Fowlkes JD, Sullivan CJ, Allison DP, Larsen NB, Molin S, Doktycz MJ. Effects of colistin on surface ultrastructure and nanomechanics of pseudomonas aeruginosa cells Langmuir. 25: 3728-3733. PMID 19227989 DOI: 10.1021/la803898g  0.52
2009 Kalyanaraman M, Retterer ST, McKnight TE, Ericson MN, Allman SL, Elkins JG, Palumbo AV, Keller M, Doktycz MJ. Controlled microfluidic production of alginate beads for in situ encapsulation of microbes 2009 1st Annual Ornl Biomedical Science and Engineering Conference, Bsec 2009. DOI: 10.1109/BSEC.2009.5090482  0.52
2008 Fowlkes JD, Fletcher BL, Retterer ST, Melechko AV, Simpson ML, Doktycz MJ. Size-selectivity and anomalous subdiffusion of nanoparticles through carbon nanofiber-based membranes. Nanotechnology. 19. PMID 21394229 DOI: 10.1088/0957-4484/19/41/415301  0.52
2008 Retterer ST, Melechko A, Hensley DK, Simpson ML, Doktycz MJ. Positional control of catalyst nanoparticles for the synthesis of high density carbon nanofiber arrays. Carbon. 46: 1378-1383. PMID 19448842 DOI: 10.1016/J.Carbon.2008.05.012  0.52
2008 Fletcher BL, Retterer ST, McKnight TE, Melechko AV, Fowlkes JD, Simpson ML, Doktycz MJ. Actuatable membranes based on polypyrrole-coated vertically aligned carbon nanofibers. Acs Nano. 2: 247-54. PMID 19206624 DOI: 10.1021/Nn700212K  0.52
2008 Allison DP, Dufrêne YF, Doktycz MJ, Hildebrand M. Biomineralization at the nanoscale learning from diatoms. Methods in Cell Biology. 90: 61-86. PMID 19195546 DOI: 10.1016/S0091-679X(08)00804-2  0.52
2008 Pelletier DA, Hurst GB, Foote LJ, Lankford PK, McKeown CK, Lu TY, Schmoyer DD, Shah MB, Hervey WJ, McDonald WH, Hooker BS, Cannon WR, Daly DS, Gilmore JM, Wiley HS, ... ... Doktycz MJ, et al. A general system for studying protein-protein interactions in Gram-negative bacteria. Journal of Proteome Research. 7: 3319-28. PMID 18590317 DOI: 10.1021/Pr8001832  0.52
2008 Betanzos-Cabrera G, Harker BW, Doktycz MJ, Weber JL, Beattie KL. Channel glass-based detection of human short insertion/deletion polymorphisms by tandem hybridization. Molecular Biotechnology. 38: 145-53. PMID 18219594 DOI: 10.1007/s12033-007-9004-9  0.52
2008 Betanzos-Cabrera G, Harker BW, Doktycz MJ, Weber JL, Beattie KL. A comparison of hybridization efficiency between flat glass and channel glass solid supports. Molecular Biotechnology. 38: 71-80. PMID 18095192 DOI: 10.1007/s12033-007-9001-z  0.52
2008 Hildebrand M, Doktycz MJ, Allison DP. Application of AFM in understanding biomineral formation in diatoms. PflüGers Archiv : European Journal of Physiology. 456: 127-37. PMID 18058126 DOI: 10.1007/S00424-007-0388-Y  0.52
2007 Fletcher BL, McKnight TE, Fowlkes JD, Allison DP, Simpson ML, Doktycz MJ. Controlling the Dimensions of Carbon Nanofiber Structures through the Electropolymerization of Pyrrole. Synthetic Metals. 157: 282-289. PMID 18431459 DOI: 10.1016/j.synthmet.2007.03.004  0.52
2007 Doktycz MJ, Simpson ML. Nano-enabled synthetic biology. Molecular Systems Biology. 3: 125. PMID 17625513 DOI: 10.1038/msb4100165  0.52
2007 Sullivan CJ, Venkataraman S, Retterer ST, Allison DP, Doktycz MJ. Comparison of the indentation and elasticity of E. coli and its spheroplasts by AFM. Ultramicroscopy. 107: 934-42. PMID 17574761 DOI: 10.1016/J.Ultramic.2007.04.017  0.52
2007 Liu Y, Das S, Olszewski RE, Carpenter DA, Culiat CT, Sundberg JP, Soteropoulos P, Liu X, Doktycz MJ, Michaud EJ, Voy BH. The near-naked hairless (Hr(N)) mutation disrupts hair formation but is not due to a mutation in the Hairless coding region. The Journal of Investigative Dermatology. 127: 1605-14. PMID 17330134 DOI: 10.1038/Sj.Jid.5700755  0.52
2006 Fowlkes JD, Hullander ED, Fletcher BL, Retterer ST, Melechko AV, Hensley DK, Simpson ML, Doktycz MJ. Molecular transport in a crowded volume created from vertically aligned carbon nanofibres: a fluorescence recovery after photobleaching study. Nanotechnology. 17: 5659-68. PMID 21727339 DOI: 10.1088/0957-4484/17/22/021  0.52
2006 Dhindsa MS, Smith NR, Heikenfeld J, Rack PD, Fowlkes JD, Doktycz MJ, Melechko AV, Simpson ML. Reversible electrowetting of vertically aligned superhydrophobic carbon nanofibers. Langmuir : the Acs Journal of Surfaces and Colloids. 22: 9030-4. PMID 17014150 DOI: 10.1021/La061139B  0.52
2006 Chourey K, Thompson MR, Morrell-Falvey J, Verberkmoes NC, Brown SD, Shah M, Zhou J, Doktycz M, Hettich RL, Thompson DK. Global molecular and morphological effects of 24-hour chromium(VI) exposure on Shewanella oneidensis MR-1. Applied and Environmental Microbiology. 72: 6331-44. PMID 16957260 DOI: 10.1128/Aem.00813-06  0.52
2006 Beckmann MA, Venkataraman S, Doktycz MJ, Nataro JP, Sullivan CJ, Morrell-Falvey JL, Allison DP. Measuring cell surface elasticity on enteroaggregative Escherichia coli wild type and dispersin mutant by AFM. Ultramicroscopy. 106: 695-702. PMID 16682120 DOI: 10.1016/J.Ultramic.2006.02.006  0.52
2006 Hildebrand M, York E, Kelz JI, Davis AK, Frigeri LG, Allison DP, Doktycz MJ. Nanoscale control of silica morphology and three-dimensional structure during diatom cell wall formation Journal of Materials Research. 21: 2689-2698. DOI: 10.1557/Jmr.2006.0333  0.52
2006 Fletcher BL, McKnight TE, Melechko AV, Simpson ML, Doktycz MJ. Biochemical functionalization of vertically aligned carbon nanofibres Nanotechnology. 17: 2032-2039. DOI: 10.1088/0957-4484/17/8/041  0.52
2006 Fowlkes JD, Melechko AV, Klein KL, Rack PD, Smith DA, Hensley DK, Doktycz MJ, Simpson ML. Control of catalyst particle crystallographic orientation in vertically aligned carbon nanofiber synthesis Carbon. 44: 1503-1510. DOI: 10.1016/J.Carbon.2005.12.010  0.52
2005 Sullivan CJ, Morrell JL, Allison DP, Doktycz MJ. Mounting of Escherichia coli spheroplasts for AFM imaging. Ultramicroscopy. 105: 96-102. PMID 16112809 DOI: 10.1016/j.ultramic.2005.06.023  0.52
2005 Fowlkes JD, Fletcher BL, Hullander ED, Klein KL, Hensley DK, Melechko AV, Simpson ML, Doktycz MJ. Tailored transport through vertically aligned carbon nanofibre membranes; Controlled synthesis, modelling, and passive diffusion experiments Nanotechnology. 16: 3101-3109. DOI: 10.1088/0957-4484/16/12/063  0.52
2004 Coffman EA, Melechko AV, Allison DP, Simpson ML, Doktycz MJ. Surface patterning of silica nanostructures using bio-inspired templates and directed synthesis. Langmuir : the Acs Journal of Surfaces and Colloids. 20: 8431-6. PMID 15379457 DOI: 10.1021/La048907O  0.52
2004 Fletcher BL, Hullander ED, Melechko AV, McKnight TE, Klein KL, Hensley DK, Morrell JL, Simpson ML, Doktycz MJ. Microarrays of biomimetic cells formed by the controlled synthesis of carbon nanofiber membranes Nano Letters. 4: 1809-1814. DOI: 10.1021/Nl0493702  0.52
2004 Allison DP, Sullivan CJ, Morrell JL, Hoyt PR, Doktycz MJ. Atomic Force Microscopy (AFM) imaging and force recognition at the molecular level in bacteria Microscopy and Microanalysis. 10: 1094-1095. DOI: 10.1017/S1431927604885349  0.52
2004 Morrell JL, Sullivan CJ, Hoyt PR, Allison DP, Doktycz MJ. Characterization of protein interactions and glucose transport in E. coli using live cell imaging Microscopy and Microanalysis. 10: 1542-1543. DOI: 10.1017/S1431927604885258  0.52
2003 Hoyt PR, Doktycz MJ, Beattie KL, Greeley MS. DNA Microarrays Detect 4-Nonylphenol-induced Alterations in Gene Expression during Zebrafish Early Development Ecotoxicology. 12: 469-474. PMID 14680326 DOI: 10.1023/B:ECTX.0000003032.14044.c8  0.52
2003 Doktycz MJ, Sullivan CJ, Hoyt PR, Pelletier DA, Wu S, Allison DP. AFM imaging of bacteria in liquid media immobilized on gelatin coated mica surfaces Ultramicroscopy. 97: 209-216. PMID 12801673 DOI: 10.1016/S0304-3991(03)00045-7  0.52
2003 Reyes-López MA, Méndez-Tenorio A, Maldonado-Rodríguez R, Doktycz MJ, Fleming JT, Beattie KL. Fingerprinting of prokaryotic 16S rRNA genes using oligodeoxyribonucleotide microarrays and virtual hybridization Nucleic Acids Research. 31: 779-789. PMID 12527788 DOI: 10.1093/nar/gkg132  0.52
2003 Rusch TL, Dickinson W, Che J, Fieweger K, Chudyk J, Doktycz MJ, Yu A, Weber JL. Instrumentation for continuous array genotyping of short insertion/deletion polymorphisms Proceedings of Spie - the International Society For Optical Engineering. 4966: 138-145. DOI: 10.1117/12.483474  0.52
2003 McKnight TE, Melechko AV, Griffin GD, Guillorn MA, Merkulov VI, Serna F, Hensley DK, Doktycz MJ, Lowndes DH, Simpson ML. Intracellular integration of synthetic nanostructures with viable cells for controlled biochemical manipulation Nanotechnology. 14: 551-556. DOI: 10.1088/0957-4484/14/5/313  0.52
2003 Melechko AV, McKnight TE, Guillorn MA, Merkulov VI, Ilic B, Doktycz MJ, Lowndes DH, Simpson ML. Vertically aligned carbon nanofibers as sacrificial templates for nanofluidic structures Applied Physics Letters. 82: 976-978. DOI: 10.1063/1.1544058  0.52
2003 McKnight TE, Melechko AV, Guillorn MA, Merkulov VI, Doktycz MJ, Culbertson CT, Jacobson SC, Lowndes DH, Simpson ML. Effects of microfabrication processing on the electrochemistry of carbon nanofiber electrodes Journal of Physical Chemistry B. 107: 10722-10728. DOI: 10.1021/Jp034872+  0.52
2003 Rusch TL, Dickinson W, Che J, Fieweger K, Chudyk J, Doktycz MJ, Yu A, Weber JL. Updated Instrumentation for Continuous Array Genotyping of Short Insertion/Deletion Polymorphisms Annual International Conference of the Ieee Engineering in Medicine and Biology - Proceedings. 4: 3582-3585.  0.52
2002 Buchanan MV, Larimer FW, Wiley HS, Kennel SJ, Squier TJ, Ramsey JM, Rodland KD, Hurst GB, Smith RD, Xu Y, Dixon D, Doktycz MJ, Colson S, Gesteland R, Giometti C, et al. Genomes to Life "Center for Molecular and Cellular Systems": a research program for identification and characterization of protein complexes. Omics : a Journal of Integrative Biology. 6: 287-303. PMID 12630408 DOI: 10.1089/153623102321112737  0.52
2002 Melechko AV, McKnight TE, Guillorn MA, Austin DW, Ilic B, Merkulov VI, Doktycz MJ, Lowndes DH, Simpson ML. Nanopipe fabrication using vertically aligned carbon nanofiber templates Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 20: 2730-2733. DOI: 10.1116/1.1515306  0.52
2002 Zhang L, Melechko AV, Merkulov VI, Guillorn MA, Simpson ML, Lowndes DH, Doktycz MJ. Controlled transport of latex beads through vertically aligned carbon nanofiber membranes Applied Physics Letters. 81: 135-137. DOI: 10.1063/1.1490142  0.52
2001 Fredrickson HL, Perkins EJ, Bridges TS, Tonucci RJ, Fleming JK, Nagel A, Diedrich K, Mendez-Tenorio A, Doktycz MJ, Beattie KL. Towards environmental toxicogenomics - Development of a flow-through, high-density DNA hybridization array and its application to ecotoxicity assessment Science of the Total Environment. 274: 137-149. PMID 11453290 DOI: 10.1016/S0048-9697(01)00739-2  0.52
2001 Steven Hicks J, Harker BW, Beattie KL, Doktycz MJ. Modification of an automated liquid-handling system for reagent-jet, nanoliter-level dispensing Biotechniques. 30: 878-885. PMID 11314270 DOI: 10.2144/01304RR05  0.52
2000 Hoyt PR, Doktycz MJ, Modrich P, Warmack RJ, Allison DP. Identifying sequence similarities between DNA molecules Ultramicroscopy. 82: 237-244. PMID 10741675 DOI: 10.1016/S0304-3991(99)00153-9  0.52
1998 Doktycz MJ, Larimer FW, Pastrnak M, Stevens A. Comparative analyses of the secondary structures of synthetic and intracellular yeast MFA2 mRNAs. Proceedings of the National Academy of Sciences of the United States of America. 95: 14614-21. PMID 9843938 DOI: 10.1073/Pnas.95.25.14614  0.52
1998 Hurst GB, Weaver K, Doktycz MJ, Buchanan MV, Costello AM, Lidstrom ME. MALDI-TOF analysis of polymerase chain reaction products from methanotrophic bacteria. Analytical Chemistry. 70: 2693-8. PMID 9666732 DOI: 10.1021/Ac980044E  0.52
1997 Allison DP, Kerper PS, Doktycz MJ, Thundat T, Modrich P, Larimer FW, Johnson DK, Hoyt PR, Mucenski ML, Warmack RJ. Mapping individual cosmid DNAs by direct AFM imaging Genomics. 41: 379-384. PMID 9169135 DOI: 10.1006/Geno.1997.4686  0.52
1996 Allison DP, Kerper PS, Doktycz MJ, Spain JA, Modrich P, Larimer FW, Thundat T, Warmack RJ. Direct atomic force microscope imaging of EcoRI endonuclease site specifically bound to plasmid DNA molecules Proceedings of the National Academy of Sciences of the United States of America. 93: 8826-8829. PMID 8799111 DOI: 10.1073/Pnas.93.17.8826  0.52
1995 Doktycz MJ, Morris MD, Dormady SJ, Beattie KL, Jacobson KB. Optical melting of 128 octamer DNA duplexes. Effects of base pair location and nearest neighbors on thermal stability. The Journal of Biological Chemistry. 270: 8439-45. PMID 7721738 DOI: 10.1074/jbc.270.15.8439  0.52
1993 Sheardy RD, Suh D, Kurzinsky R, Doktycz MJ, Benight AS, Chaires JB. Sequence dependence of the free energy of B-Z junction formation in deoxyoligonucleotides Journal of Molecular Biology. 231: 475-488. PMID 8510158 DOI: 10.1006/Jmbi.1993.1295  0.52
1993 Paner TM, Gallo FJ, Doktycz MJ, Benight AS. Studies of DNA dumbbells. V. A DNA triplex formed between a 28 base-pair DNA dumbbell substrate and a 16 base linear single strand Biopolymers. 33: 1779-1789. PMID 8268406 DOI: 10.1002/Bip.360331204  0.52
1992 Doktycz MJ, Goldstein RF, Paner TM, Gallo FJ, Benight AS. Studies of DNA dumbbells. I. Melting curves of 17 DNA dumbbells with different duplex stem sequences linked by T4 endloops: Evaluation of the nearest-neighbor stacking interactions in DNA Biopolymers. 32: 849-864. PMID 1391634 DOI: 10.1002/Bip.360320712  0.52
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