| Year |
Citation |
Score |
| 2022 |
Thomson NM, Gilroy R, Getino M, Foster-Nyarko E, van Vliet AHM, La Ragione RM, Pallen MJ. Remarkable genomic diversity among isolates recovered from healthy chickens. Peerj. 10: e12935. PMID 35251780 DOI: 10.7717/peerj.12935 |
0.378 |
|
| 2021 |
Stubberfield E, Sheldon J, Card RM, AbuOun M, Rogers J, Williamson S, Kay GL, Pallen MJ, Anjum MF. Whole-Genome Sequencing of Isolates From England and Wales Reveals Similarities to European Isolates and Mutations Associated With Reduced Sensitivity to Antimicrobials. Frontiers in Microbiology. 12: 713233. PMID 34531838 DOI: 10.3389/fmicb.2021.713233 |
0.392 |
|
| 2021 |
Gilroy R, Ravi A, Getino M, Pursley I, Horton DL, Alikhan NF, Baker D, Gharbi K, Hall N, Watson M, Adriaenssens EM, Foster-Nyarko E, Jarju S, Secka A, Antonio M, ... ... Pallen MJ, et al. Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture. Peerj. 9: e10941. PMID 33868800 DOI: 10.7717/peerj.10941 |
0.448 |
|
| 2021 |
Foster-Nyarko E, Alikhan NF, Ikumapayi UN, Sarwar G, Okoi C, Tientcheu PM, Defernez M, O'Grady J, Antonio M, Pallen MJ. Genomic diversity of from healthy children in rural Gambia. Peerj. 9: e10572. PMID 33505796 DOI: 10.7717/peerj.10572 |
0.586 |
|
| 2021 |
Foster-Nyarko E, Alikhan NF, Ravi A, Thomson NM, Jarju S, Kwambana-Adams BA, Secka A, O'Grady J, Antonio M, Pallen MJ. Genomic diversity of isolates from backyard chickens and guinea fowl in the Gambia. Microbial Genomics. 7. PMID 33253086 DOI: 10.1099/mgen.0.000484 |
0.587 |
|
| 2020 |
Foster-Nyarko E, Alikhan NF, Ravi A, Thilliez G, Thomson NM, Baker D, Kay G, Cramer JD, O'Grady J, Antonio M, Pallen MJ. Genomic diversity of isolates from non-human primates in the Gambia. Microbial Genomics. 6. PMID 32924917 DOI: 10.1099/mgen.0.000428 |
0.594 |
|
| 2020 |
Senghore M, Diarra B, Gehre F, Otu J, Worwui A, Muhammad AK, Kwambana-Adams B, Kay GL, Sanogo M, Baya B, Orsega S, Doumbia S, Diallo S, de Jong BC, Pallen MJ, et al. Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali. Scientific Reports. 10: 327. PMID 31941887 DOI: 10.1038/s41598-019-56001-0 |
0.523 |
|
| 2020 |
Foster-Nyarko E, Alikhan N, Ravi A, Thilliez G, Thomson N, Baker D, Kay G, D. Cramer J, O’Grady J, Antonio M, Pallen M. Non-human primates in the Gambia harbour human-associated pathogenic Escherichia coli strains Access Microbiology. 2. DOI: 10.1099/acmi.ac2020.po0781 |
0.572 |
|
| 2017 |
Senghore M, Otu J, Witney A, Gehre F, Doughty EL, Kay GL, Butcher P, Salako K, Kehinde A, Onyejepu N, Idigbe E, Corrah T, de Jong B, Pallen MJ, Antonio M. Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria. Plos One. 12: e0184510. PMID 28926571 DOI: 10.1371/journal.pone.0184510 |
0.569 |
|
| 2017 |
Card RM, Cawthraw SA, Nunez-Garcia J, Ellis RJ, Kay G, Pallen MJ, Woodward MJ, Anjum MF. An In Vitro Chicken Gut Model Demonstrates Transfer of a Multidrug Resistance Plasmid from Salmonella to Commensal Escherichia coli. Mbio. 8. PMID 28720731 DOI: 10.1128/mBio.00777-17 |
0.352 |
|
| 2016 |
Gehre F, Otu J, Kendall L, Forson A, Kwara A, Kudzawu S, Kehinde AO, Adebiyi O, Salako K, Baldeh I, Jallow A, Jallow M, Dagnra A, Dissé K, Kadanga EA, ... ... Pallen MJ, et al. The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance. Bmc Medicine. 14: 160. PMID 27806714 DOI: 10.1186/s12916-016-0704-5 |
0.48 |
|
| 2016 |
Kwambana-Adams BA, Asiedu-Bekoe F, Sarkodie B, Afreh OK, Kuma GK, Owusu-Okyere G, Foster-Nyarko E, Ohene SA, Okot C, Worwui AK, Okoi C, Senghore M, Otu JK, Ebruke C, Bannerman R, ... ... Pallen MJ, et al. An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana. Bmc Infectious Diseases. 16: 575. PMID 27756235 DOI: 10.1186/s12879-016-1914-3 |
0.391 |
|
| 2016 |
Higgins PG, Koehler D, Chan JZ, Cornely OA, Fätkenheuer G, Gillis M, Pallen MJ, Tien J, Seifert H, Vehreschild MJ, Millard AD. Draft Genome Sequences of Nine Clinical Isolates of Vancomycin-Resistant Enterococci. Genome Announcements. 4. PMID 27540059 DOI: 10.1128/genomeA.00803-16 |
0.35 |
|
| 2016 |
Senghore M, Bayliss SC, Kwambana-Adams BA, Foster-Nyarko E, Manneh J, Dione M, Badji H, Ebruke C, Doughty EL, Thorpe HA, Jasinska AJ, Schmitt CA, Cramer JD, Turner TR, Weinstock G, ... ... Pallen MJ, et al. Whole-genome sequencing reveals transmission of Staphylococcus aureus from humans to green monkeys in The Gambia. Applied and Environmental Microbiology. PMID 27474712 DOI: 10.1128/Aem.01496-16 |
0.532 |
|
| 2016 |
Duggett NA, Kay GL, Sergeant MJ, Bedford M, Constantinidou CI, Penn CW, Millard AD, Pallen MJ. Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca. Genome Announcements. 4. PMID 27231374 DOI: 10.1128/genomeA.00448-16 |
0.348 |
|
| 2016 |
Higgins PG, Chan JZ, Seifert H, Pallen MJ, Millard AD. Draft Genome Sequences of 11 Clinical Isolates of Acinetobacter baumannii. Genome Announcements. 4. PMID 27081137 DOI: 10.1128/genomeA.00269-16 |
0.341 |
|
| 2015 |
Webber MA, Whitehead RN, Mount M, Loman NJ, Pallen MJ, Piddock LJ. Parallel evolutionary pathways to antibiotic resistance selected by biocide exposure. The Journal of Antimicrobial Chemotherapy. 70: 2241-8. PMID 25953808 DOI: 10.1093/jac/dkv109 |
0.664 |
|
| 2014 |
Halachev MR, Chan JZ, Constantinidou CI, Cumley N, Bradley C, Smith-Banks M, Oppenheim B, Pallen MJ. Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England. Genome Medicine. 6: 70. PMID 25414729 DOI: 10.1186/s13073-014-0070-x |
0.314 |
|
| 2014 |
Doughty EL, Sergeant MJ, Adetifa I, Antonio M, Pallen MJ. Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer. Peerj. 2: e585. PMID 25279265 DOI: 10.7717/peerj.585 |
0.524 |
|
| 2014 |
Kay GL, Sergeant MJ, Giuffra V, Bandiera P, Milanese M, Bramanti B, Bianucci R, Pallen MJ. Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. Mbio. 5: e01337-14. PMID 25028426 DOI: 10.1128/mBio.01337-14 |
0.346 |
|
| 2014 |
Kay GL, Sergeant MJ, Giuffra V, Bandiera P, Milanese M, Bramanti B, Bianucci R, Pallen MJ. Recovery of a medieval Brucella melitensis genome using shotgun metagenomics. Mbio. 5: e01337-14. PMID 25028426 DOI: 10.1128/mBio.01337-14 |
0.346 |
|
| 2013 |
Snyder LA, Loman NJ, Faraj LA, Levi K, Weinstock G, Boswell TC, Pallen MJ, Ala'Aldeen DA. Epidemiological investigation of Pseudomonas aeruginosa isolates from a six-year-long hospital outbreak using high-throughput whole genome sequencing. Euro Surveillance : Bulletin Europã©En Sur Les Maladies Transmissibles = European Communicable Disease Bulletin. 18. PMID 24176582 DOI: 10.2807/1560-7917.ES2013.18.42.20611 |
0.356 |
|
| 2012 |
Williams TM, Loman NJ, Ebruke C, Musher DM, Adegbola RA, Pallen MJ, Weinstock GM, Antonio M. Genome analysis of a highly virulent serotype 1 strain of Streptococcus pneumoniae from West Africa. Plos One. 7: e26742. PMID 23082106 DOI: 10.1371/Journal.Pone.0026742 |
0.531 |
|
| 2012 |
Kochar M, Crosatti M, Harrison EM, Rieck B, Chan J, Constantinidou C, Pallen M, Ou HY, Rajakumar K. Deletion of TnAbaR23 results in both expected and unexpected antibiogram changes in a multidrug-resistant Acinetobacter baumannii strain. Antimicrobial Agents and Chemotherapy. 56: 1845-53. PMID 22290963 DOI: 10.1128/AAC.05334-11 |
0.337 |
|
| 2012 |
Ricci V, Loman N, Pallen M, Ivens A, Fookes M, Langridge GC, Wain J, Piddock LJ. The TCA cycle is not required for selection or survival of multidrug-resistant Salmonella. The Journal of Antimicrobial Chemotherapy. 67: 589-99. PMID 22186876 DOI: 10.1093/jac/dkr515 |
0.667 |
|
| 2011 |
Hornsey M, Loman N, Wareham DW, Ellington MJ, Pallen MJ, Turton JF, Underwood A, Gaulton T, Thomas CP, Doumith M, Livermore DM, Woodford N. Whole-genome comparison of two Acinetobacter baumannii isolates from a single patient, where resistance developed during tigecycline therapy Journal of Antimicrobial Chemotherapy. 66: 1499-1503. PMID 21565804 DOI: 10.1093/jac/dkr168 |
0.696 |
|
| 2011 |
Zarrilli R, Giannouli M, Rocco F, Loman NJ, Haines AS, Constantinidou C, Pallen MJ, Triassi M, Di Nocera PP. Genome sequences of three Acinetobacter baumannii strains assigned to the multilocus sequence typing genotypes ST2, ST25, and ST78. Journal of Bacteriology. 193: 2359-60. PMID 21398548 DOI: 10.1128/JB.00245-11 |
0.39 |
|
| 2010 |
Lewis T, Loman NJ, Bingle L, Jumaa P, Weinstock GM, Mortiboy D, Pallen MJ. High-throughput whole-genome sequencing to dissect the epidemiology of Acinetobacter baumannii isolates from a hospital outbreak. The Journal of Hospital Infection. 75: 37-41. PMID 20299126 DOI: 10.1016/J.Jhin.2010.01.012 |
0.343 |
|
| 2009 |
Loman NJ, Snyder LAS, Linton JD, Langdon R, Lawson AJ, Weinstock GM, Wren BW, Pallen MJ. Genome sequence of the emerging pathogen Helicobacter canadensis Journal of Bacteriology. 191: 5566-5567. PMID 19542273 DOI: 10.1128/Jb.00729-09 |
0.312 |
|
| 2009 |
Snyder LA, Loman N, Pallen MJ, Penn CW. Next-generation sequencing--the promise and perils of charting the great microbial unknown. Microbial Ecology. 57: 1-3. PMID 19015912 DOI: 10.1007/s00248-008-9465-9 |
0.657 |
|
| 2009 |
Berger CN, Shaw RK, Brown DJ, Mather H, Clare S, Dougan G, Pallen MJ, Frankel G. Interaction of Salmonella enterica with basil and other salad leaves. The Isme Journal. 3: 261-5. PMID 18830276 DOI: 10.1038/ismej.2008.95 |
0.503 |
|
| 2007 |
Pallen MJ, Wren BW. Bacterial pathogenomics. Nature. 449: 835-42. PMID 17943120 DOI: 10.1038/nature06248 |
0.314 |
|
| 2007 |
Pallen MJ, Wren BW. Bacterial pathogenomics. Nature. 449: 835-42. PMID 17943120 DOI: 10.1038/nature06248 |
0.314 |
|
| 2007 |
Chaudhuri RR, Ren CP, Desmond L, Vincent GA, Silman NJ, Brehm JK, Elmore MJ, Hudson MJ, Forsman M, Isherwood KE, Gurycová D, Minton NP, Titball RW, Pallen MJ, Vipond R. Genome sequencing shows that European isolates of Francisella tularensis subspecies tularensis are almost identical to US laboratory strain Schu S4. Plos One. 2: e352. PMID 17406676 DOI: 10.1371/journal.pone.0000352 |
0.304 |
|
| 2004 |
Ren CP, Chaudhuri RR, Fivian A, Bailey CM, Antonio M, Barnes WM, Pallen MJ. The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. Journal of Bacteriology. 186: 3547-60. PMID 15150243 DOI: 10.1128/JB.186.11.3547-3560.2004 |
0.517 |
|
| 2003 |
Cerdeño-Tárraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, et al. The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. Nucleic Acids Research. 31: 6516-23. PMID 14602910 DOI: 10.1093/nar/gkg874 |
0.331 |
|
| 2002 |
Antonio M, McFerran N, Pallen MJ. Mutations affecting the Rossman fold of isoleucyl-tRNA synthetase are correlated with low-level mupirocin resistance in Staphylococcus aureus. Antimicrobial Agents and Chemotherapy. 46: 438-42. PMID 11796355 DOI: 10.1128/AAC.46.2.438-442.2002 |
0.493 |
|
| 1999 |
Spector MP, Garcia del Portillo F, Bearson SM, Mahmud A, Magut M, Finlay BB, Dougan G, Foster JW, Pallen MJ. The rpoS-dependent starvation-stress response locus stiA encodes a nitrate reductase (narZYWV) required for carbon-starvation-inducible thermotolerance and acid tolerance in Salmonella typhimurium. Microbiology (Reading, England). 145: 3035-45. PMID 10589711 DOI: 10.1099/00221287-145-11-3035 |
0.486 |
|
| 1999 |
Pallen MJ. Microbial genomes. Molecular Microbiology. 32: 907-12. PMID 10490383 DOI: 10.1046/j.1365-2958.1999.01427.x |
0.308 |
|
| 1999 |
Spector MP, DiRusso CC, Pallen MJ, Del Portillo FG, Dougan G, Finlay BB. The medium-/long-chain fatty acyl-CoA dehydrogenase (fadF) gene of Salmonella typhimurium is a phase 1 starvation-stress response (SSR) locus. Microbiology (Reading, England). 145: 15-31. PMID 10206693 DOI: 10.1099/13500872-145-1-15 |
0.489 |
|
| 1998 |
Knutton S, Rosenshine I, Pallen MJ, Nisan I, Neves BC, Bain C, Wolff C, Dougan G, Frankel G. A novel EspA-associated surface organelle of enteropathogenic Escherichia coli involved in protein translocation into epithelial cells. The Embo Journal. 17: 2166-76. PMID 9545230 DOI: 10.1093/emboj/17.8.2166 |
0.353 |
|
| 1997 |
Farrant JL, Sansone A, Canvin JR, Pallen MJ, Langford PR, Wallis TS, Dougan G, Kroll JS. Bacterial copper- and zinc-cofactored superoxide dismutase contributes to the pathogenesis of systemic salmonellosis. Molecular Microbiology. 25: 785-96. PMID 9379906 DOI: 10.1046/j.1365-2958.1997.5151877.x |
0.375 |
|
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