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Jan Lipfert, Ph.D. - Publications

Affiliations: 
Physics University of Munich, München, Bayern, Germany 
Area:
biophysics, nucleic acids, magnetic tweezers, SAXS
Website:
http://www.biophysik.physik.uni-muenchen.de/personen/group_leader/lipfert_jan/
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104 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Zettl T, Shi X, Bonilla S, Sedlak SM, Lipfert J, Herschlag D. The structural ensemble of a Holliday junction determined by X-ray scattering interference. Nucleic Acids Research. PMID 32597986 DOI: 10.1093/Nar/Gkaa509  0.414
2020 Ott K, Martini L, Lipfert J, Gerland U. Dynamics of the Buckling Transition in Double-Stranded DNA and RNA. Biophysical Journal. 118: 1690-1701. PMID 32367807 DOI: 10.1016/J.Bpj.2020.01.049  0.37
2020 Vanderlinden W, Kolbeck PJ, Kriegel F, Walker PU, Lipfert J. A benchmark data set for the mechanical properties of double-stranded DNA and RNA under torsional constraint. Data in Brief. 30: 105404. PMID 32309523 DOI: 10.1016/J.Dib.2020.105404  0.401
2020 Dohnalová H, Dršata T, Šponer J, Zacharias M, Lipfert J, Lankaš F. Compensatory Mechanisms in Temperature Dependence of DNA Double Helical Structure: Bending and Elongation. Journal of Chemical Theory and Computation. PMID 32196331 DOI: 10.1021/Acs.Jctc.0C00037  0.336
2019 Lak A, Kahmann T, Schaper SJ, Obel J, Ludwig F, Muller-Buschbaum P, Lipfert J. The Dissociation Rate of Acetylacetonate Ligands Governs the Size of Ferrimagnetic Zinc Ferrite Nanocubes. Acs Applied Materials & Interfaces. PMID 31804796 DOI: 10.1021/Acsami.9B17714  0.303
2019 Vanderlinden W, Brouns T, Walker PU, Kolbeck PJ, Milles LF, Ott W, Nickels PC, Debyser Z, Lipfert J. The free energy landscape of retroviral integration. Nature Communications. 10: 4738. PMID 31628321 DOI: 10.1038/S41467-019-12649-W  0.309
2019 Löf A, Walker PU, Sedlak SM, Gruber S, Obser T, Brehm MA, Benoit M, Lipfert J. Multiplexed protein force spectroscopy reveals equilibrium protein folding dynamics and the low-force response of von Willebrand factor. Proceedings of the National Academy of Sciences of the United States of America. PMID 31462494 DOI: 10.1073/Pnas.1901794116  0.331
2019 Vanderlinden W, Kolbeck PJ, Frederickx W, Konrad SF, Nicolaus T, Lampe C, Urban AS, Moucheron C, Lipfert J. Ru(TAP)32+ uses multivalent binding to accelerate and constrain photo-adduct formation on DNA. Chemical Communications (Cambridge, England). PMID 31139806 DOI: 10.1039/C9Cc02838B  0.31
2018 Brouns T, De Keersmaecker H, Konrad SF, Kodera N, Ando T, Lipfert J, De Feyter S, Vanderlinden W. Free Energy Landscape and Dynamics of Supercoiled DNA by High-Speed Atomic Force Microscopy. Acs Nano. PMID 30346700 DOI: 10.1021/Acsnano.8B06994  0.333
2018 Ivanović MT, Bruetzel LK, Shevchuk R, Lipfert J, Hub JS. Quantifying the influence of the ion cloud on SAXS profiles of charged proteins. Physical Chemistry Chemical Physics : Pccp. PMID 30303199 DOI: 10.1039/C8Cp03080D  0.389
2018 Kriegel F, Matek C, Dršata T, Kulenkampff K, Tschirpke S, Zacharias M, Lankaš F, Lipfert J. The temperature dependence of the helical twist of DNA. Nucleic Acids Research. PMID 30053087 DOI: 10.1093/Nar/Gky599  0.331
2018 Kriegel F, Vanderlinden W, Nicolaus T, Kardinal A, Lipfert J. Measuring Single-Molecule Twist and Torque in Multiplexed Magnetic Tweezers. Methods in Molecular Biology (Clifton, N.J.). 1814: 75-98. PMID 29956228 DOI: 10.1007/978-1-4939-8591-3_6  0.37
2018 Zettl T, Das R, Harbury PAB, Herschlag D, Lipfert J, Mathew RS, Shi X. Recording and Analyzing Nucleic Acid Distance Distributions with X-Ray Scattering Interferometry (XSI). Current Protocols in Nucleic Acid Chemistry. 73: e54. PMID 29927110 DOI: 10.1002/Cpnc.54  0.564
2018 Zettl T, Mathew RS, Shi X, Doniach S, Herschlag D, Harbury PAB, Lipfert J. Gold nanocrystal labels provide a sequence-to-3D structure map in SAXS reconstructions. Science Advances. 4: eaar4418. PMID 29806025 DOI: 10.1126/Sciadv.Aar4418  0.591
2018 van Oene MM, Ha S, Jager T, Lee M, Pedaci F, Lipfert J, Dekker NH. Quantifying the Precision of Single-Molecule Torque and Twist Measurements Using Allan Variance. Biophysical Journal. 114: 1970-1979. PMID 29694873 DOI: 10.1016/J.Bpj.2018.02.039  0.33
2018 Bruetzel LK, Walker P, Gerling T, Dietz H, Lipfert J. Time-Resolved Small-Angle X-Ray Scattering Reveals Millisecond Transitions of a DNA Origami Switch. Nano Letters. PMID 29554806 DOI: 10.1021/Acs.Nanolett.8B00592  0.403
2018 Ivanovic MT, Bruetzel LK, Lipfert J, Hub JS. Temperature-dependent atomic models of detergent micelles refined against small-angle X-ray scattering data. Angewandte Chemie (International Ed. in English). PMID 29532982 DOI: 10.1002/Anie.201713303  0.378
2018 Harrer N, Schindler CEM, Bruetzel LK, Forné I, Ludwigsen J, Imhof A, Zacharias M, Lipfert J, Mueller-Planitz F. Structural Architecture of the Nucleosome Remodeler ISWI Determined from Cross-Linking, Mass Spectrometry, SAXS, and Modeling. Structure (London, England : 1993). PMID 29395785 DOI: 10.1016/J.Str.2017.12.015  0.359
2018 Walker PU, Vanderlinden W, Lipfert J. Dynamics and energy landscape of DNA plectoneme nucleation Physical Review E. 98. DOI: 10.1103/Physreve.98.042412  0.318
2017 Nomidis SK, Kriegel F, Vanderlinden W, Lipfert J, Carlon E. Twist-Bend Coupling and the Torsional Response of Double-Stranded DNA. Physical Review Letters. 118: 217801. PMID 28598642 DOI: 10.1103/Physrevlett.118.217801  0.322
2017 Kriegel F, Ermann N, Forbes R, Dulin D, Dekker NH, Lipfert J. Probing the salt dependence of the torsional stiffness of DNA by multiplexed magnetic torque tweezers. Nucleic Acids Research. PMID 28460037 DOI: 10.1093/Nar/Gkx280  0.349
2017 Sedlak SM, Bruetzel LK, Lipfert J. Quantitative evaluation of statistical errors in small-angle X-ray scattering measurements. Journal of Applied Crystallography. 50: 621-630. PMID 28381982 DOI: 10.1107/S1600576717003077  0.314
2017 Simoncelli S, Johnson S, Kriegel F, Lipfert J, Feldmann J. Stretching and Heating Single DNA Molecules with Optically Trapped Gold–Silica Janus Particles Acs Photonics. 4: 2843-2851. DOI: 10.1021/Acsphotonics.7B00839  0.309
2017 Vardanyan H, Sindbert S, Kalinin S, Hanke CA, Soltynski T, Lach G, Springstubbe D, Apel B, Snell E, Grant TD, Lipfert J, Müller S, Bujnicki JM, Gohlke H, Seidel CAM. FRET, SAXS and Molecular Simulations Resolve the Solution Structures of Three Coexisting Conformers of Flexible RNA Four-Way Junction Biophysical Journal. 112. DOI: 10.1016/J.Bpj.2016.11.1992  0.375
2016 Müller JP, Löf A, Mielke S, Obser T, Bruetzel LK, Vanderlinden W, Lipfert J, Schneppenheim R, Benoit M. pH-Dependent Interactions in Dimers Govern the Mechanics and Structure of von Willebrand Factor. Biophysical Journal. 111: 312-322. PMID 27463134 DOI: 10.1016/J.Bpj.2016.06.022  0.312
2016 Kriegel F, Ermann N, Lipfert J. Probing the Mechanical Properties, Conformational Changes, and Interactions of Nucleic Acids with Magnetic Tweezers. Journal of Structural Biology. PMID 27368129 DOI: 10.1016/J.Jsb.2016.06.022  0.379
2016 Bruetzel LK, Gerling T, Sedlak SM, Walker P, Zheng W, Dietz H, Lipfert J. Conformational Changes and Flexibility of DNA Devices Observed by Small-Angle X-Ray Scattering. Nano Letters. PMID 27356232 DOI: 10.1021/Acs.Nanolett.6B01338  0.564
2016 Zettl T, Mathew RS, Seifert S, Harbury PA, Doniach S, Lipfert J. Absolute Intra-Molecular Distance Measurements with Ångström-Resolution using Anomalous Small-Angle X-ray Scattering. Nano Letters. PMID 27244097 DOI: 10.1021/Acs.Nanolett.6B01160  0.592
2016 Bruetzel LK, Fischer S, Salditt A, Sedlak SM, Nickel B, Lipfert J. A Mo-anode-based in-house source for small-angle X-ray scattering measurements of biological macromolecules. The Review of Scientific Instruments. 87: 025103. PMID 26931887 DOI: 10.1063/1.4940936  0.396
2016 Müller JP, Mielke S, Löf A, Obser T, Beer C, Bruetzel LK, Pippig DA, Vanderlinden W, Lipfert J, Schneppenheim R, Benoit M. Force sensing by the vascular protein von Willebrand factor is tuned by a strong intermonomer interaction. Proceedings of the National Academy of Sciences of the United States of America. PMID 26787887 DOI: 10.1073/Pnas.1516214113  0.332
2016 Schindler CEM, Harrer N, Lipfert J, Müller-Planitz F, Zacharias M. Integrative Modeling of the ISWI Chromatin Remodeling Enzyme from Cross-Linking/Mass Spectrometry and Saxs Data Biophysical Journal. 110. DOI: 10.1016/J.Bpj.2015.11.1307  0.347
2015 Dulin D, Cui TJ, Cnossen J, Docter MW, Lipfert J, Dekker NH. High Spatiotemporal-Resolution Magnetic Tweezers: Calibration and Applications for DNA Dynamics. Biophysical Journal. 109: 2113-25. PMID 26588570 DOI: 10.1016/J.Bpj.2015.10.018  0.34
2015 Gebala M, Giambasu GM, Lipfert J, Bisaria N, Bonilla S, Li G, York DM, Herschlag D. Cation-Anion Interactions within the Nucleic Acid Ion Atmosphere Revealed by Ion Counting Studies. Journal of the American Chemical Society. PMID 26517731 DOI: 10.1021/Jacs.5B08395  0.361
2015 Liebl K, Drsata T, Lankas F, Lipfert J, Zacharias M. Explaining the striking difference in twist-stretch coupling between DNA and RNA: A comparative molecular dynamics analysis. Nucleic Acids Research. PMID 26464435 DOI: 10.1093/Nar/Gkv1028  0.407
2015 Vlijm R, Lee M, Lipfert J, Lusser A, Dekker C, Dekker NH. Nucleosome assembly dynamics involve spontaneous fluctuations in the handedness of tetrasomes. Cell Reports. 10: 216-25. PMID 25578730 DOI: 10.1016/J.Celrep.2014.12.022  0.318
2014 Lipfert J, Skinner GM, Keegstra JM, Hensgens T, Jager T, Dulin D, Köber M, Yu Z, Donkers SP, Chou FC, Das R, Dekker NH. Double-stranded RNA under force and torque: similarities to and striking differences from double-stranded DNA. Proceedings of the National Academy of Sciences of the United States of America. 111: 15408-13. PMID 25313077 DOI: 10.1073/Pnas.1407197111  0.563
2014 Oliver RC, Lipfert J, Fox DA, Lo RH, Kim JJ, Doniach S, Columbus L. Tuning micelle dimensions and properties with binary surfactant mixtures. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 13353-61. PMID 25312254 DOI: 10.1021/La503458N  0.496
2014 Oliver RC, Lipfert J, Fox DA, Lo RH, Kim JJ, Doniach S, Columbus L. Tuning micelle dimensions and properties with binary surfactant mixtures. Langmuir : the Acs Journal of Surfaces and Colloids. 30: 13353-61. PMID 25312254 DOI: 10.1021/La503458N  0.496
2014 Chou FC, Lipfert J, Das R. Blind predictions of DNA and RNA tweezers experiments with force and torque Plos Computational Biology. 10: e1003756. PMID 25102226 DOI: 10.1371/Journal.Pcbi.1003756  0.579
2014 Lipfert J, Doniach S, Das R, Herschlag D. Understanding nucleic acid-ion interactions. Annual Review of Biochemistry. 83: 813-41. PMID 24606136 DOI: 10.1146/Annurev-Biochem-060409-092720  0.62
2014 Lipfert J, Doniach S, Das R, Herschlag D. Understanding nucleic acid-ion interactions. Annual Review of Biochemistry. 83: 813-41. PMID 24606136 DOI: 10.1146/Annurev-Biochem-060409-092720  0.62
2014 Lipfert J, van Oene M, Jager T, Lee M, Pedaci F, Dekker NH. Quantifying the Resolution of Single-Molecule Torque Measurements by Allan Variance Biophysical Journal. 106: 450a. DOI: 10.1016/J.Bpj.2013.11.2549  0.312
2013 Lee M, Lipfert J, Sanchez H, Wyman C, Dekker NH. Structural and torsional properties of the RAD51-dsDNA nucleoprotein filament Nucleic Acids Research. 41: 7023-7030. PMID 23703213 DOI: 10.1093/Nar/Gkt425  0.383
2013 Oliver RC, Lipfert J, Fox DA, Lo RH, Doniach S, Columbus L. Dependence of micelle size and shape on detergent alkyl chain length and head group. Plos One. 8: e62488. PMID 23667481 DOI: 10.1371/Journal.Pone.0062488  0.52
2013 Oliver RC, Lipfert J, Fox DA, Lo RH, Doniach S, Columbus L. Dependence of micelle size and shape on detergent alkyl chain length and head group. Plos One. 8: e62488. PMID 23667481 DOI: 10.1371/Journal.Pone.0062488  0.52
2013 Oliver RC, Lipfert J, Columbus L. Modulating the Physical Properties of Micelles for Membrane Protein Investigations Biophysical Journal. 104: 44a. DOI: 10.1016/J.Bpj.2012.11.282  0.374
2013 Lipfert J, Skinner GM, Keegstra J, Hensgens T, Jager T, Dulin D, Donkers S, Dekker NH. Probing the Response of Double-Stranded RNA to Force and Torque at the Single-Molecule Level Biophysical Journal. 104: 1a-2a. DOI: 10.1016/J.Bpj.2012.11.023  0.391
2012 Sim AY, Lipfert J, Herschlag D, Doniach S. Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 021901. PMID 23005779 DOI: 10.1103/Physreve.86.021901  0.584
2012 Sim AY, Lipfert J, Herschlag D, Doniach S. Salt dependence of the radius of gyration and flexibility of single-stranded DNA in solution probed by small-angle x-ray scattering. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 86: 021901. PMID 23005779 DOI: 10.1103/Physreve.86.021901  0.584
2012 Janssen XJ, Lipfert J, Jager T, Daudey R, Beekman J, Dekker NH. Electromagnetic torque tweezers: a versatile approach for measurement of single-molecule twist and torque. Nano Letters. 12: 3634-9. PMID 22642488 DOI: 10.1021/Nl301330H  0.344
2012 Janssen XJ, Lipfert J, Daudey C, van der Does J, Roos D, Beekman J, Dekker NH. Introducing the Electromagnetic Torque Tweezers Biophysical Journal. 102: 386a. DOI: 10.1016/J.Bpj.2011.11.2112  0.301
2012 Lipfert J, Skinner GM, Donkers S, Huang Z, Dulin D, Keegstra JM, Hensgens T, Dekker NH. The Mechanical Properties of Double-Stranded RNA in Response to Force and Torque Biophysical Journal. 102: 275a. DOI: 10.1016/J.Bpj.2011.11.1514  0.387
2012 Doniach S, Lipfert J. Small and wide angle x-ray scattering from biological macromolecules and their complexes in solution Comprehensive Biophysics. 1: 376-397. DOI: 10.1016/B978-0-12-374920-8.00122-3  0.52
2011 Lipfert J, Wiggin M, Kerssemakers JWJ, Pedaci F, Dekker NH. Freely orbiting magnetic tweezers to directly monitor changes in the twist of nucleic acids Nature Communications. 2. PMID 21863006 DOI: 10.1038/Ncomms1450  0.368
2011 Wiggin MJ, Lipfert J, van Wijk R, Kerssemakers J, Dekker N. Freely Orbiting Magnetic Tweezers: A New Twist on Single Molecule Force Spectroscopy Biophysical Journal. 100: 23a-24a. DOI: 10.1016/J.Bpj.2010.12.335  0.347
2011 Skinner GM, Donkers SP, Lipfert J, Huang Z, Dekker NH. Characterization of Supercoiled Double-Stranded RNA, and Comparison to Double-Stranded DNA Biophysical Journal. 100: 236a. DOI: 10.1016/J.Bpj.2010.12.1503  0.403
2011 Lipfert J, Skinner GM, Wiggin MJ, Kerssemakers JW, Jager T, Dekker NH. Magnetic Torque Tweezers and Their Application in Probing the Torsional Properties of DNA, RNA, and DNA Filaments Biophysical Journal. 100: 176a. DOI: 10.1016/J.Bpj.2010.12.1183  0.371
2011 Lipfert J, Herschlag D, Doniach S, Dekker NH. RNA Structure, Function, and (Thermo-) Dynamics: A SAXS and Single-Molecule Perspective Biophysical Journal. 100: 1a-2a. DOI: 10.1016/J.Bpj.2010.11.060  0.604
2010 Lipfert J, Kerssemakers JWJ, Jager T, Dekker NH. Magnetic torque tweezers: Measuring torsional stiffness in DNA and RecA-DNA filaments Nature Methods. 7: 977-980. PMID 20953173 DOI: 10.1038/Nmeth.1520  0.31
2010 Te Velthuis AJW, Kerssemakers JWJ, Lipfert J, Dekker NH. Quantitative guidelines for force calibration through spectral analysis of magnetic tweezers data Biophysical Journal. 99: 1292-1302. PMID 20713015 DOI: 10.1016/J.Bpj.2010.06.008  0.316
2010 Lipfert J, Klijnhout S, Dekker NH. Torsional sensing of small-molecule binding using magnetic tweezers Nucleic Acids Research. 38: 7122-7132. PMID 20624816 DOI: 10.1093/Nar/Gkq598  0.35
2010 Lipfert J, Sim AY, Herschlag D, Doniach S. Dissecting electrostatic screening, specific ion binding, and ligand binding in an energetic model for glycine riboswitch folding. Rna (New York, N.Y.). 16: 708-19. PMID 20194520 DOI: 10.1261/Rna.1985110  0.601
2010 Ali M, Lipfert J, Seifert S, Herschlag D, Doniach S. The ligand-free state of the TPP riboswitch: a partially folded RNA structure. Journal of Molecular Biology. 396: 153-65. PMID 19925806 DOI: 10.1016/J.Jmb.2009.11.030  0.556
2010 Ali M, Lipfert J, Seifert S, Herschlag D, Doniach S. The ligand-free state of the TPP riboswitch: a partially folded RNA structure. Journal of Molecular Biology. 396: 153-65. PMID 19925806 DOI: 10.1016/J.Jmb.2009.11.030  0.556
2010 Skinner GM, Donkers SP, Lipfert J, Dekker NH. Supercoiling Double-Stranded RNA Biophysical Journal. 98: 468a. DOI: 10.1016/J.Bpj.2009.12.2545  0.371
2009 Doniach S, Lipfert J. Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs. Methods in Enzymology. 469: 237-51. PMID 20946792 DOI: 10.1016/S0076-6879(09)69011-X  0.588
2009 Doniach S, Lipfert J. Use of small angle X-ray scattering (SAXS) to characterize conformational states of functional RNAs. Methods in Enzymology. 469: 237-51. PMID 20946792 DOI: 10.1016/S0076-6879(09)69011-X  0.588
2009 Chu VB, Lipfert J, Bai Y, Pande VS, Doniach S, Herschlag D. Do conformational biases of simple helical junctions influence RNA folding stability and specificity? Rna (New York, N.Y.). 15: 2195-205. PMID 19850914 DOI: 10.1261/Rna.1747509  0.628
2009 Chu VB, Lipfert J, Bai Y, Pande VS, Doniach S, Herschlag D. Do conformational biases of simple helical junctions influence RNA folding stability and specificity? Rna (New York, N.Y.). 15: 2195-205. PMID 19850914 DOI: 10.1261/Rna.1747509  0.628
2009 Lipfert J, Koster DA, Vilfan ID, Hage S, Dekker NH. Single-molecule magnetic tweezers studies of type IB topoisomerases. Methods in Molecular Biology (Clifton, N.J.). 582: 71-89. PMID 19763943 DOI: 10.1007/978-1-60761-340-4_7  0.316
2009 Columbus L, Lipfert J, Jambunathan K, Fox DA, Sim AY, Doniach S, Lesley SA. Mixing and matching detergents for membrane protein NMR structure determination. Journal of the American Chemical Society. 131: 7320-6. PMID 19425578 DOI: 10.1021/Ja808776J  0.54
2009 Columbus L, Lipfert J, Jambunathan K, Fox DA, Sim AY, Doniach S, Lesley SA. Mixing and matching detergents for membrane protein NMR structure determination. Journal of the American Chemical Society. 131: 7320-6. PMID 19425578 DOI: 10.1021/Ja808776J  0.54
2009 Lipfert J, Herschlag D, Doniach S. Riboswitch conformations revealed by small-angle X-ray scattering. Methods in Molecular Biology (Clifton, N.J.). 540: 141-59. PMID 19381558 DOI: 10.1007/978-1-59745-558-9_11  0.597
2009 Lipfert J, Herschlag D, Doniach S. Riboswitch conformations revealed by small-angle X-ray scattering. Methods in Molecular Biology (Clifton, N.J.). 540: 141-59. PMID 19381558 DOI: 10.1007/978-1-59745-558-9_11  0.597
2009 Lipfert J, Klijnhout S, Dekker NH. Small-Molecule Binding to DNA under Tension and Twist Studied by Magnetic Tweezers Biophysical Journal. 96: 216a. DOI: 10.1016/J.Bpj.2008.12.1898  0.357
2009 Sim AYL, Lipfert J, Herschlag D, Doniach S. Scaling Behavior of Single Stranded DNA Measured by Small Angle X-ray Scattering Biophysical Journal. 96. DOI: 10.1016/J.Bpj.2008.12.1744  0.583
2008 Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. A repulsive field: advances in the electrostatics of the ion atmosphere. Current Opinion in Chemical Biology. 12: 619-25. PMID 19081286 DOI: 10.1016/J.Cbpa.2008.10.010  0.596
2008 Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. A repulsive field: advances in the electrostatics of the ion atmosphere. Current Opinion in Chemical Biology. 12: 619-25. PMID 19081286 DOI: 10.1016/J.Cbpa.2008.10.010  0.596
2008 Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DM. The complete VS ribozyme in solution studied by small-angle X-ray scattering. Structure (London, England : 1993). 16: 1357-67. PMID 18786398 DOI: 10.1016/J.Str.2008.07.007  0.562
2008 Lipfert J, Ouellet J, Norman DG, Doniach S, Lilley DM. The complete VS ribozyme in solution studied by small-angle X-ray scattering. Structure (London, England : 1993). 16: 1357-67. PMID 18786398 DOI: 10.1016/J.Str.2008.07.007  0.562
2008 Bai Y, Chu VB, Lipfert J, Pande VS, Herschlag D, Doniach S. Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble. Journal of the American Chemical Society. 130: 12334-41. PMID 18722445 DOI: 10.1021/Ja800854U  0.65
2008 Bai Y, Chu VB, Lipfert J, Pande VS, Herschlag D, Doniach S. Critical assessment of nucleic acid electrostatics via experimental and computational investigation of an unfolded state ensemble. Journal of the American Chemical Society. 130: 12334-41. PMID 18722445 DOI: 10.1021/Ja800854U  0.65
2008 Spink BJ, Sivaramakrishnan S, Lipfert J, Doniach S, Spudich JA. Long single alpha-helical tail domains bridge the gap between structure and function of myosin VI. Nature Structural & Molecular Biology. 15: 591-7. PMID 18511944 DOI: 10.1038/Nsmb.1429  0.523
2007 Bai Y, Greenfeld M, Travers KJ, Chu VB, Lipfert J, Doniach S, Herschlag D. Quantitative and comprehensive decomposition of the ion atmosphere around nucleic acids. Journal of the American Chemical Society. 129: 14981-8. PMID 17990882 DOI: 10.1021/Ja075020G  0.622
2007 Lipfert J, Columbus L, Chu VB, Lesley SA, Doniach S. Size and shape of detergent micelles determined by small-angle X-ray scattering. The Journal of Physical Chemistry. B. 111: 12427-38. PMID 17924686 DOI: 10.1021/Jp073016L  0.549
2007 Lipfert J, Columbus L, Chu VB, Lesley SA, Doniach S. Size and shape of detergent micelles determined by small-angle X-ray scattering. The Journal of Physical Chemistry. B. 111: 12427-38. PMID 17924686 DOI: 10.1021/Jp073016L  0.549
2007 Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophysical Journal. 93: 3202-9. PMID 17604318 DOI: 10.1529/Biophysj.106.099168  0.578
2007 Chu VB, Bai Y, Lipfert J, Herschlag D, Doniach S. Evaluation of ion binding to DNA duplexes using a size-modified Poisson-Boltzmann theory. Biophysical Journal. 93: 3202-9. PMID 17604318 DOI: 10.1529/Biophysj.106.099168  0.578
2007 Lipfert J, Doniach S. Small-angle X-ray scattering from RNA, proteins, and protein complexes. Annual Review of Biophysics and Biomolecular Structure. 36: 307-27. PMID 17284163 DOI: 10.1146/Annurev.Biophys.36.040306.132655  0.584
2007 Lipfert J, Doniach S. Small-angle X-ray scattering from RNA, proteins, and protein complexes. Annual Review of Biophysics and Biomolecular Structure. 36: 307-27. PMID 17284163 DOI: 10.1146/Annurev.Biophys.36.040306.132655  0.584
2007 Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. Journal of Molecular Biology. 365: 1393-406. PMID 17118400 DOI: 10.1016/J.Jmb.2006.10.022  0.656
2007 Lipfert J, Das R, Chu VB, Kudaravalli M, Boyd N, Herschlag D, Doniach S. Structural transitions and thermodynamics of a glycine-dependent riboswitch from Vibrio cholerae. Journal of Molecular Biology. 365: 1393-406. PMID 17118400 DOI: 10.1016/J.Jmb.2006.10.022  0.656
2007 Lipfert J, Columbus L, Chu VB, Doniach S. Analysis of small-angle X-ray scattering data of protein-detergent complexes by singular value decomposition Journal of Applied Crystallography. 40: s235-s239. DOI: 10.1107/S0021889807005791  0.529
2007 Lipfert J, Columbus L, Chu VB, Doniach S. Analysis of small-angle X-ray scattering data of protein-detergent complexes by singular value decomposition Journal of Applied Crystallography. 40: s235-s239. DOI: 10.1107/S0021889807005791  0.529
2007 Lipfert J, Chu VB, Bai Y, Herschlag D, Doniach S. Low-resolution models for nucleic acids from small-angle X-ray scattering with applications to electrostatic modeling Journal of Applied Crystallography. 40: s229-s234. DOI: 10.1107/S0021889807001707  0.677
2006 Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of Molecular Biology. 362: 1004-24. PMID 16949611 DOI: 10.1016/J.Jmb.2006.07.092  0.525
2006 Dantas G, Watters AL, Lunde BM, Eletr ZM, Isern NG, Roseman T, Lipfert J, Doniach S, Tompa M, Kuhlman B, Stoddard BL, Varani G, Baker D. Mis-translation of a computationally designed protein yields an exceptionally stable homodimer: implications for protein engineering and evolution. Journal of Molecular Biology. 362: 1004-24. PMID 16949611 DOI: 10.1016/J.Jmb.2006.07.092  0.525
2006 Columbus L, Lipfert J, Klock H, Millett I, Doniach S, Lesley SA. Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination. Protein Science : a Publication of the Protein Society. 15: 961-75. PMID 16597824 DOI: 10.1110/Ps.051874706  0.524
2006 Columbus L, Lipfert J, Klock H, Millett I, Doniach S, Lesley SA. Expression, purification, and characterization of Thermotoga maritima membrane proteins for structure determination. Protein Science : a Publication of the Protein Society. 15: 961-75. PMID 16597824 DOI: 10.1110/Ps.051874706  0.524
2006 Lipfert J, Millett IS, Seifert S, Doniach S. Sample holder for small-angle x-ray scattering static and flow cell measurements Review of Scientific Instruments. 77. DOI: 10.1063/1.2194484  0.563
2005 Zagrovic B, Lipfert J, Sorin EJ, Millett IS, van Gunsteren WF, Doniach S, Pande VS. Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 11698-703. PMID 16085707 DOI: 10.1073/Pnas.0409693102  0.582
2005 Zagrovic B, Lipfert J, Sorin EJ, Millett IS, van Gunsteren WF, Doniach S, Pande VS. Unusual compactness of a polyproline type II structure. Proceedings of the National Academy of Sciences of the United States of America. 102: 11698-703. PMID 16085707 DOI: 10.1073/Pnas.0409693102  0.582
2005 Lipfert J, Franklin J, Wu F, Doniach S. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing. Journal of Molecular Biology. 349: 648-58. PMID 15896350 DOI: 10.1016/J.Jmb.2005.03.083  0.568
2005 Lipfert J, Franklin J, Wu F, Doniach S. Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing. Journal of Molecular Biology. 349: 648-58. PMID 15896350 DOI: 10.1016/J.Jmb.2005.03.083  0.568
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