| Year |
Citation |
Score |
| 2024 |
Ma PF, Liu YL, Guo C, Jin G, Guo ZH, Mao L, Yang YZ, Niu LZ, Wang YJ, Clark LG, Kellogg EA, Xu ZC, Ye XY, Liu JX, Zhou MY, et al. Genome assemblies of 11 bamboo species highlight diversification induced by dynamic subgenome dominance. Nature Genetics. PMID 38491323 DOI: 10.1038/s41588-024-01683-0 |
0.741 |
|
| 2024 |
Liu YL, Gao SY, Jin G, Zhou MY, Gao Q, Guo C, Yang YZ, Niu LZ, Xia E, Guo ZH, Ma PF, Li DZ. BambooBase: A comprehensive database of bamboo omics and systematics. Molecular Plant. PMID 38419327 DOI: 10.1016/j.molp.2024.02.017 |
0.617 |
|
| 2023 |
Qin SY, Yu Zuo Z, Xu SX, Liu J, Yang FM, Luo YH, Ye JW, Zhao Y, Rong J, Liu B, Ma PF, Li DZ. Anthropogenic disturbance driving population decline of a dominant tree in East Asia evergreen broadleaved forests over the last 11, 000 years. Conservation Biology : the Journal of the Society For Conservation Biology. PMID 37700668 DOI: 10.1111/cobi.14180 |
0.481 |
|
| 2023 |
Qin SY, Zuo ZY, Guo C, Du XY, Liu SY, Yu XQ, Xiang XG, Rong J, Liu B, Liu ZF, Ma PF, Li DZ. Phylogenomic insights into the origin and evolutionary history of evergreen broadleaved forests in East Asia under Cenozoic climate change. Molecular Ecology. PMID 36847615 DOI: 10.1111/mec.16904 |
0.597 |
|
| 2022 |
Lv SY, Ye XY, Li ZH, Ma PF, Li DZ. Testing complete plastomes and nuclear ribosomal DNA sequences for species identification in a taxonomically difficult bamboo genus . Plant Diversity. 45: 147-155. PMID 37069924 DOI: 10.1016/j.pld.2022.04.002 |
0.619 |
|
| 2022 |
Niu LZ, Xu W, Ma PF, Guo ZH, Li DZ. Single-base methylome analysis reveals dynamic changes of genome-wide DNA methylation associated with rapid stem growth of woody bamboos. Planta. 256: 53. PMID 35913571 DOI: 10.1007/s00425-022-03962-8 |
0.636 |
|
| 2022 |
Wu H, Yang JB, Liu JX, Li DZ, Ma PF. Organelle Phylogenomics and Extensive Conflicting Phylogenetic Signals in the Monocot Order Poales. Frontiers in Plant Science. 12: 824672. PMID 35173754 DOI: 10.3389/fpls.2021.824672 |
0.651 |
|
| 2021 |
Li HT, Luo Y, Gan L, Ma PF, Gao LM, Yang JB, Cai J, Gitzendanner MA, Fritsch PW, Zhang T, Jin JJ, Zeng CX, Wang H, Yu WB, Zhang R, et al. Plastid phylogenomic insights into relationships of all flowering plant families. Bmc Biology. 19: 232. PMID 34711223 DOI: 10.1186/s12915-021-01166-2 |
0.715 |
|
| 2021 |
Jin G, Ma PF, Wu X, Gu L, Long M, Zhang C, Li DZ. New Genes Interacted with Recent Whole Genome Duplicates in the Fast Stem Growth of Bamboos. Molecular Biology and Evolution. PMID 34581782 DOI: 10.1093/molbev/msab288 |
0.604 |
|
| 2021 |
Wu H, Ma PF, Li HT, Hu GX, Li DZ. Comparative plastomic analysis and insights into the phylogeny of (Lamiaceae). Plant Diversity. 43: 15-26. PMID 33778221 DOI: 10.1016/j.pld.2020.07.004 |
0.64 |
|
| 2021 |
Ma PF, Liu YL, Jin GH, Liu JX, Wu H, He J, Guo ZH, Li DZ. The Pharus latifolius genome bridges the gap of early grass evolution. The Plant Cell. PMID 33630094 DOI: 10.1093/plcell/koab015 |
0.756 |
|
| 2020 |
Guo C, Ma PF, Yang GQ, Ye XY, Guo Y, Liu JX, Liu YL, Eaton DAR, Guo ZH, Li DZ. Parallel ddRAD and Genome Skimming Analyses Reveal a Radiative and Reticulate Evolutionary History of the Temperate Bamboos. Systematic Biology. PMID 33057686 DOI: 10.1093/sysbio/syaa076 |
0.74 |
|
| 2020 |
Liu JX, Zhou MY, Yang GQ, Zhang YX, Ma PF, Vorontsova MS, Li DZ. ddRAD analyses reveal a credible phylogenetic relationship of the four main genera of Bambusa-Dendrocalamus-Gigantochloa complex (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution. 106758. PMID 32028031 DOI: 10.1016/j.ympev.2020.106758 |
0.59 |
|
| 2019 |
Guo ZH, Ma PF, Yang GQ, Hu JY, Liu YL, Xia EH, Zhong MC, Zhao L, Sun GL, Xu YX, Zhao YJ, Zhang YC, Zhang YX, Zhang XM, Zhou MY, et al. Genome sequences provide insights into the reticulate origin and unique traits of woody bamboos. Molecular Plant. PMID 31145999 DOI: 10.1016/j.molp.2019.05.009 |
0.794 |
|
| 2019 |
Zhang LN, Ma PF, Zhang YX, Zeng CX, Zhao L, Li DZ. Using Nuclear Loci and Allelic Variation to Disentangle the Phylogeny of Phyllostachys (Poaceae, Bambusoideae). Molecular Phylogenetics and Evolution. PMID 31112779 DOI: 10.1016/j.ympev.2019.05.011 |
0.598 |
|
| 2019 |
Li HT, Yi TS, Gao LM, Ma PF, Zhang T, Yang JB, Gitzendanner MA, Fritsch PW, Cai J, Luo Y, Wang H, van der Bank M, Zhang SD, Wang QF, Wang J, et al. Origin of angiosperms and the puzzle of the Jurassic gap. Nature Plants. PMID 31061536 DOI: 10.1038/S41477-019-0421-0 |
0.756 |
|
| 2018 |
Ma L, Ma P, Li D. The first complete plastid genome of L. from the mycoheterotrophic monocot family Burmanniaceae. Plant Diversity. 40: 232-237. PMID 30740569 DOI: 10.1016/j.pld.2018.07.004 |
0.638 |
|
| 2018 |
Mower JP, Ma PF, Grewe F, Taylor A, Michael TP, VanBuren R, Qiu YL. Lycophyte plastid genomics: extreme variation in GC, gene and intron content and multiple inversions between a direct and inverted orientation of the rRNA repeat. The New Phytologist. PMID 30556907 DOI: 10.1111/Nph.15650 |
0.433 |
|
| 2018 |
Zhang YX, Ma PF, Li DZ. A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China. Phytokeys. 67-76. PMID 30364324 DOI: 10.3897/phytokeys.109.27566 |
0.551 |
|
| 2017 |
Ma PF, Vorontsova MS, Nanjarisoa OP, Razanatsoa J, Guo ZH, Haevermans T, Li DZ. Negative correlation between rates of molecular evolution and flowering cycles in temperate woody bamboos revealed by plastid phylogenomics. Bmc Plant Biology. 17: 260. PMID 29268709 DOI: 10.1186/s12870-017-1199-8 |
0.649 |
|
| 2017 |
Fu CN, Li HT, Milne R, Zhang T, Ma PF, Yang J, Li DZ, Gao LM. Comparative analyses of plastid genomes from fourteen Cornales species: inferences for phylogenetic relationships and genome evolution. Bmc Genomics. 18: 956. PMID 29216844 DOI: 10.1186/s12864-017-4319-9 |
0.767 |
|
| 2017 |
Zhang MY, Fritsch PW, Ma PF, Wang H, Lu L, Li DZ. Plastid Phylogenomics and Adaptive Evolution of Gaultheria series Trichophyllae (Ericaceae), a Clade from Sky Islands of the Himalaya-Hengduan Mountains. Molecular Phylogenetics and Evolution. PMID 28215572 DOI: 10.1016/j.ympev.2017.01.015 |
0.662 |
|
| 2016 |
Luo Y, Ma PF, Li HT, Yang JB, Wang H, Li DZ. Plastid phylogenomic analyses resolve Tofieldiaceae as the root of the early diverging monocot order Alismatales. Genome Biology and Evolution. PMID 26957030 DOI: 10.1093/gbe/evv260 |
0.679 |
|
| 2015 |
Zhang XZ, Zeng CX, Ma PF, Haevermans T, Zhang YX, Zhang LN, Guo ZH, Li DZ. Multi-locus plastid phylogenetic biogeography supports the Asian hypothesis of the temperate woody bamboos (Poaceae: Bambusoideae). Molecular Phylogenetics and Evolution. PMID 26723898 DOI: 10.1016/j.ympev.2015.11.025 |
0.682 |
|
| 2015 |
Cai J, Ma PF, Li HT, Li DZ. Complete Plastid Genome Sequencing of Four Tilia Species (Malvaceae): A Comparative Analysis and Phylogenetic Implications. Plos One. 10: e0142705. PMID 26566230 DOI: 10.1371/journal.pone.0142705 |
0.691 |
|
| 2015 |
Ma PF, Zhang YX, Guo ZH, Li DZ. Evidence for horizontal transfer of mitochondrial DNA to the plastid genome in a bamboo genus. Scientific Reports. 5: 11608. PMID 26100509 DOI: 10.1038/srep11608 |
0.72 |
|
| 2014 |
Ma PF, Zhang YX, Zeng CX, Guo ZH, Li DZ. Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae). Systematic Biology. 63: 933-50. PMID 25092479 DOI: 10.1093/sysbio/syu054 |
0.754 |
|
| 2014 |
Zhang LN, Zhang XZ, Zhang YX, Zeng CX, Ma PF, Zhao L, Guo ZH, Li DZ. Identification of putative orthologous genes for the phylogenetic reconstruction of temperate woody bamboos (Poaceae: Bambusoideae). Molecular Ecology Resources. 14: 988-99. PMID 24606129 DOI: 10.1111/1755-0998.12248 |
0.705 |
|
| 2013 |
Li R, Ma PF, Wen J, Yi TS. Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications. Plos One. 8: e78568. PMID 24205264 DOI: 10.1371/Journal.Pone.0078568 |
0.485 |
|
| 2013 |
Zhao L, Zhang N, Ma PF, Liu Q, Li DZ, Guo ZH. Phylogenomic analyses of nuclear genes reveal the evolutionary relationships within the BEP clade and the evidence of positive selection in Poaceae. Plos One. 8: e64642. PMID 23734211 DOI: 10.1371/journal.pone.0064642 |
0.735 |
|
| 2012 |
Ma PF, Guo ZH, Li DZ. Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses. Plos One. 7: e30297. PMID 22272330 DOI: 10.1371/journal.pone.0030297 |
0.732 |
|
| 2011 |
Zhang YJ, Ma PF, Li DZ. High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae). Plos One. 6: e20596. PMID 21655229 DOI: 10.1371/journal.pone.0020596 |
0.657 |
|
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