☰

Derek Aguiar - Publications

Affiliations: 
Department of Computer Science University of Connecticut, Storrs, CT, United States 
Tree Info Similar researchers PubMed Report error

12 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Alpay BA, Demetci P, Istrail S, Aguiar D. Combinatorial and statistical prediction of gene expression from haplotype sequence. Bioinformatics (Oxford, England). 36: i194-i202. PMID 32657373 DOI: 10.1093/Bioinformatics/Btaa318  0.57
2014 McDowell IC, Nikapitiya C, Aguiar D, Lane CE, Istrail S, Gomez-Chiarri M. Transcriptome of American oysters, Crassostrea virginica, in response to bacterial challenge: insights into potential mechanisms of disease resistance. Plos One. 9: e105097. PMID 25122115 DOI: 10.1371/Journal.Pone.0105097  0.564
2014 Aguiar D, Wong WS, Istrail S. Tumor haplotype assembly algorithms for cancer genomics. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 3-14. PMID 24297529  0.641
2014 Aguiar D, Morrow E, Istrail S. Tractatus: An exact and subquadratic algorithm for inferring identical-by-descent multi-shared haplotype tracts Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 8394: 1-17. DOI: 10.1007/978-3-319-05269-4_1  0.654
2013 Aguiar D, Istrail S. Haplotype assembly in polyploid genomes and identical by descent shared tracts. Bioinformatics (Oxford, England). 29: i352-60. PMID 23813004 DOI: 10.1093/Bioinformatics/Btt213  0.666
2013 Tulin S, Aguiar D, Istrail S, Smith J. A quantitative reference transcriptome for Nematostella vectensis early embryonic development: a pipeline for de novo assembly in emerging model systems. Evodevo. 4: 16. PMID 23731568 DOI: 10.1186/2041-9139-4-16  0.582
2012 Aguiar D, Istrail S. HapCompass: a fast cycle basis algorithm for accurate haplotype assembly of sequence data. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 19: 577-90. PMID 22697235 DOI: 10.1089/Cmb.2012.0084  0.681
2012 Aguiar D, Halldórsson BV, Morrow EM, Istrail S. DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism. Bioinformatics (Oxford, England). 28: i154-62. PMID 22689755 DOI: 10.1093/Bioinformatics/Bts234  0.679
2011 Halldórsson BV, Aguiar D, Tarpine R, Istrail S. The Clark phaseable sample size problem: long-range phasing and loss of heterozygosity in GWAS. Journal of Computational Biology : a Journal of Computational Molecular Cell Biology. 18: 323-33. PMID 21385037 DOI: 10.1089/Cmb.2010.0288  0.655
2011 Halldórsson BV, Aguiar D, Istrail S. Haplotype phasing by multi-assembly of shared haplotypes: phase-dependent interactions between rare variants. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 88-99. PMID 21121036  0.66
2010 Istrail S, Tarpine R, Schutter K, Aguiar D. Practical computational methods for regulatory genomics: a cisGRN-Lexicon and cisGRN-browser for gene regulatory networks. Methods in Molecular Biology (Clifton, N.J.). 674: 369-99. PMID 20827603 DOI: 10.1007/978-1-60761-854-6_22  0.635
2010 Halldórsson BV, Aguiar D, Tarpine R, Istrail S. The clark phase-able sample size problem: Long-range phasing and loss of heterozygosity in GWAS Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 6044: 158-173. DOI: 10.1007/978-3-642-12683-3_11  0.652
Show low-probability matches.