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Mohamed Nadhir Djekidel - Publications

Affiliations: 
2021- Center for Applied BioInformatics St Jude Children's Research Hospital, New York, NY, United States 
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21 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Bhattacherjee A, Zhang C, Watson BR, Djekidel MN, Moffitt JR, Zhang Y. Spatial transcriptomics reveals the distinct organization of mouse prefrontal cortex and neuronal subtypes regulating chronic pain. Nature Neuroscience. PMID 37845544 DOI: 10.1038/s41593-023-01455-9  0.418
2023 Matsui Y, Djekidel MN, Lindsay K, Samir P, Connolly N, Wu G, Yang X, Fan Y, Xu B, Peng JC. SNIP1 and PRC2 coordinate cell fates of neural progenitors during brain development. Nature Communications. 14: 4754. PMID 37553330 DOI: 10.1038/s41467-023-40487-4  0.613
2023 Lim B, Djekidel MN, Matsui Y, Jung S, Yuan ZF, Wang X, Yang X, Pilehroud AS, Pan H, Wang F, Pruett-Miller S, Kavdia K, Pagala V, Fan Y, Peng J, et al. Phosphorylation of 53BP1 by ATM enforce neurodevelopmental programs in cortical organoids. Biorxiv : the Preprint Server For Biology. PMID 37205560 DOI: 10.1101/2023.05.04.539457  0.653
2023 Wright S, Hu J, Wang H, Hyle J, Zhang Y, Du G, Konopleva MY, Kornblau SM, Djekidel MN, Rosikiewicz W, Xu B, Lu R, Yang JJ, Li C. Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens. Proceedings of the National Academy of Sciences of the United States of America. 120: e2220134120. PMID 37036970 DOI: 10.1073/pnas.2220134120  0.564
2023 Hyle J, Djekidel MN, Williams J, Wright S, Shao Y, Xu B, Li C. Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation. Genome Biology. 24: 14. PMID 36698211 DOI: 10.1186/s13059-022-02843-3  0.638
2022 Chen R, Liu Y, Djekidel MN, Chen W, Bhattacherjee A, Chen Z, Scolnick E, Zhang Y. Cell type-specific mechanism of Setd1a heterozygosity in schizophrenia pathogenesis. Science Advances. 8: eabm1077. PMID 35245111 DOI: 10.1126/sciadv.abm1077  0.643
2021 Wang Y, Wang M, Djekidel MN, Chen H, Liu D, Alt FW, Zhang Y. eccDNAs are apoptotic products with high innate immunostimulatory activity. Nature. 599: 308-314. PMID 34671165 DOI: 10.1038/s41586-021-04009-w  0.32
2021 Chen R, Blosser TR, Djekidel MN, Hao J, Bhattacherjee A, Chen W, Tuesta LM, Zhuang X, Zhang Y. Decoding molecular and cellular heterogeneity of mouse nucleus accumbens. Nature Neuroscience. 24: 1757-1771. PMID 34663959 DOI: 10.1038/s41593-021-00938-x  0.712
2021 Xu B, Wang H, Wright S, Hyle J, Zhang Y, Shao Y, Niu M, Fan Y, Rosikiewicz W, Djekidel MN, Peng J, Lu R, Li C. Acute depletion of CTCF rewires genome-wide chromatin accessibility. Genome Biology. 22: 244. PMID 34429148 DOI: 10.1186/s13059-021-02466-0  0.609
2021 Djekidel MN, Rosikiewicz W, Peng JC, Kanneganti TD, Hui Y, Jin H, Hedges D, Schreiner P, Fan Y, Wu G, Xu B. CovidExpress: an interactive portal for intuitive investigation on SARS-CoV-2 related transcriptomes. Biorxiv : the Preprint Server For Biology. PMID 34075382 DOI: 10.1101/2021.05.14.444026  0.576
2021 Chen Z, Djekidel MN, Zhang Y. Distinct dynamics and functions of H2AK119ub1 and H3K27me3 in mouse preimplantation embryos. Nature Genetics. PMID 33821005 DOI: 10.1038/s41588-021-00821-2  0.345
2019 Bhattacherjee A, Djekidel MN, Chen R, Chen W, Tuesta LM, Zhang Y. Cell type-specific transcriptional programs in mouse prefrontal cortex during adolescence and addiction. Nature Communications. 10: 4169. PMID 31519873 DOI: 10.1038/S41467-019-12054-3  0.725
2019 Fu X, Wu X, Djekidel MN, Zhang Y. Myc and Dnmt1 impede the pluripotent to totipotent state transition in embryonic stem cells. Nature Cell Biology. PMID 31209294 DOI: 10.1038/S41556-019-0343-0  0.377
2019 Tuesta LM, Djekidel MN, Chen R, Lu F, Wang W, Sabatini BL, Zhang Y. In vivo nuclear capture and molecular profiling identifies Gmeb1 as a transcriptional regulator essential for dopamine neuron function. Nature Communications. 10: 2508. PMID 31175277 DOI: 10.1038/S41467-019-10267-0  0.701
2018 Djekidel MN, Inoue A, Matoba S, Suzuki T, Zhang C, Lu F, Jiang L, Zhang Y. Reprogramming of Chromatin Accessibility in Somatic Cell Nuclear Transfer Is DNA Replication Independent. Cell Reports. 23: 1939-1947. PMID 29768195 DOI: 10.1016/J.Celrep.2018.04.036  0.646
2018 Djekidel MN, Chen Y, Zhang MQ. FIND: difFerential chromatin INteractions Detection using a spatial Poisson process. Genome Research. PMID 29440282 DOI: 10.1101/Gr.212241.116  0.389
2018 Li Y, He Y, Liang Z, Wang Y, Chen F, Djekidel MN, Li G, Zhang X, Xiang S, Wang Z, Gao J, Zhang MQ, Chen Y. Alterations of specific chromatin conformation affect ATRA-induced leukemia cell differentiation. Cell Death & Disease. 9: 200. PMID 29422670 DOI: 10.1038/S41419-017-0173-6  0.533
2017 Liang Z, Li G, Wang Z, Djekidel MN, Li Y, Qian MP, Zhang MQ, Chen Y. BL-Hi-C is an efficient and sensitive approach for capturing structural and regulatory chromatin interactions. Nature Communications. 8: 1622. PMID 29158486 DOI: 10.1038/S41467-017-01754-3  0.481
2016 Djekidel MN, Wang M, Zhang MQ, Gao J. HiC-3DViewer: a new tool to visualize Hi-C data in 3D space Quantitative Biology. 5: 183-190. DOI: 10.1007/s40484-017-0091-8  0.312
2016 Gao J, Yang X, Djekidel MN, Wang Y, Xi P, Zhang MQ. Developing bioimaging and quantitative methods to study 3D genome Quantitative Biology. 4: 129-147. DOI: 10.1007/s40484-016-0065-2  0.349
2015 Djekidel MN, Liang Z, Wang Q, Hu Z, Li G, Chen Y, Zhang MQ. 3CPET: finding co-factor complexes from ChIA-PET data using a hierarchical Dirichlet process. Genome Biology. 16: 288. PMID 26694485 DOI: 10.1186/S13059-015-0851-6  0.427
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