| Year |
Citation |
Score |
| 2023 |
Byun J, Vellampatti S, Chatterjee P, Hwang SH, Kim BC, Lee J. Characterization of the role of Kunitz-type protease inhibitor domain in dimerization of amyloid precursor protein. Journal of Computational Chemistry. PMID 36988355 DOI: 10.1002/jcc.27100 |
0.526 |
|
| 2022 |
Hong Y, Song J, Ko J, Lee J, Shin WH. S-Pred: protein structural property prediction using MSA transformer. Scientific Reports. 12: 13891. PMID 35974061 DOI: 10.1038/s41598-022-18205-9 |
0.756 |
|
| 2022 |
Hong Y, Lee J, Ko J. A-Prot: protein structure modeling using MSA transformer. Bmc Bioinformatics. 23: 93. PMID 35296230 DOI: 10.1186/s12859-022-04628-8 |
0.703 |
|
| 2022 |
Ucak UV, Ashyrmamatov I, Ko J, Lee J. Retrosynthetic reaction pathway prediction through neural machine translation of atomic environments. Nature Communications. 13: 1186. PMID 35246540 DOI: 10.1038/s41467-022-28857-w |
0.715 |
|
| 2021 |
Choi J, Lee J. V-Dock: Fast Generation of Novel Drug-like Molecules Using Machine-Learning-Based Docking Score and Molecular Optimization. International Journal of Molecular Sciences. 22. PMID 34769065 DOI: 10.3390/ijms222111635 |
0.419 |
|
| 2021 |
Kang B, Seok C, Lee J. MOLGENGO: Finding Novel Molecules with Desired Electronic Properties by Capitalizing on Their Global Optimization. Acs Omega. 6: 27454-27465. PMID 34693166 DOI: 10.1021/acsomega.1c04347 |
0.68 |
|
| 2021 |
Ucak UV, Kang T, Ko J, Lee J. Substructure-based neural machine translation for retrosynthetic prediction. Journal of Cheminformatics. 13: 4. PMID 33431017 DOI: 10.1186/s13321-020-00482-z |
0.71 |
|
| 2020 |
Kwon Y, Shin WH, Ko J, Lee J. AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks. International Journal of Molecular Sciences. 21. PMID 33182567 DOI: 10.3390/ijms21228424 |
0.762 |
|
| 2020 |
Kang B, Seok C, Lee J. Prediction of Molecular Electronic Transitions Using Random Forests. Journal of Chemical Information and Modeling. PMID 33090804 DOI: 10.1021/acs.jcim.0c00698 |
0.694 |
|
| 2017 |
Heo S, Lee J, Joo K, Shin HC, Lee J. Protein Loop Structure Prediction using Conformational Space Annealing. Journal of Chemical Information and Modeling. PMID 28398048 DOI: 10.1021/acs.jcim.6b00742 |
0.34 |
|
| 2016 |
Tofoleanu F, Lee J, Pickard Iv FC, König G, Huang J, Baek M, Seok C, Brooks BR. Absolute binding free energies for octa-acids and guests in SAMPL5 : Evaluating binding free energies for octa-acid and guest complexes in the SAMPL5 blind challenge. Journal of Computer-Aided Molecular Design. PMID 27696242 DOI: 10.1007/S10822-016-9965-5 |
0.769 |
|
| 2016 |
Lee J, Tofoleanu F, Pickard FC, König G, Huang J, Damjanović A, Baek M, Seok C, Brooks BR. Absolute binding free energy calculations of CBClip host-guest systems in the SAMPL5 blind challenge. Journal of Computer-Aided Molecular Design. PMID 27677749 DOI: 10.1007/S10822-016-9968-2 |
0.762 |
|
| 2016 |
Pickard FC, König G, Tofoleanu F, Lee J, Simmonett AC, Shao Y, Ponder JW, Brooks BR. Blind prediction of distribution in the SAMPL5 challenge with QM based protomer and pK a corrections. Journal of Computer-Aided Molecular Design. PMID 27646286 DOI: 10.1007/S10822-016-9955-7 |
0.309 |
|
| 2014 |
Manavalan B, Lee J, Lee J. Random forest-based protein model quality assessment (RFMQA) using structural features and potential energy terms. Plos One. 9: e106542. PMID 25222008 DOI: 10.1371/journal.pone.0106542 |
0.309 |
|
| 2013 |
Lee D, Lee J, Seok C. What stabilizes close arginine pairing in proteins? Physical Chemistry Chemical Physics : Pccp. 15: 5844-53. PMID 23486862 DOI: 10.1039/c3cp00160a |
0.724 |
|
| 2011 |
Shin WH, Heo L, Lee J, Ko J, Seok C, Lee J. LigDockCSA: protein-ligand docking using conformational space annealing. Journal of Computational Chemistry. 32: 3226-32. PMID 21837636 DOI: 10.1002/jcc.21905 |
0.718 |
|
| 2011 |
Lee J, Lee J, Sasaki TN, Sasai M, Seok C, Lee J. De novo protein structure prediction by dynamic fragment assembly and conformational space annealing. Proteins. 79: 2403-17. PMID 21604307 DOI: 10.1002/prot.23059 |
0.667 |
|
| 2010 |
Lee J, Kim YG, Kim KK, Seok C. Transition between B-DNA and Z-DNA: free energy landscape for the B-Z junction propagation. The Journal of Physical Chemistry. B. 114: 9872-81. PMID 20666528 DOI: 10.1021/jp103419t |
0.554 |
|
| 2010 |
Lee J, Kim JS, Seok C. Cooperativity and specificity of Cys2His2 zinc finger protein-DNA interactions: a molecular dynamics simulation study. The Journal of Physical Chemistry. B. 114: 7662-71. PMID 20469897 DOI: 10.1021/jp1017289 |
0.601 |
|
| 2008 |
Lee J, Seok C. A statistical rescoring scheme for protein-ligand docking: Consideration of entropic effect. Proteins. 70: 1074-83. PMID 18076034 DOI: 10.1002/prot.21844 |
0.649 |
|
| Show low-probability matches. |