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Sònia Casillas, Ph.D. - Publications

Affiliations: 
Departament de Genètica i de Microbiologia Universitat Autònoma de Barcelona, Barcelona, Spain 
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30 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Murga-Moreno J, Casillas S, Barbadilla A, Uricchio L, Enard D. An efficient and robust ABC approach to infer the rate and strength of adaptation. G3 (Bethesda, Md.). PMID 38365205 DOI: 10.1093/g3journal/jkae031  0.812
2023 Murga-Moreno J, Casillas S, Barbadilla A, Uricchio L, Enard D. An efficient and robust ABC approach to infer the rate and strength of adaptation. Biorxiv : the Preprint Server For Biology. PMID 37693550 DOI: 10.1101/2023.08.29.555322  0.808
2022 Murga-Moreno J, Coronado-Zamora M, Casillas S, Barbadilla A. The Imputed McDonald and Kreitman test (impMKT): a straightforward correction that significantly increases the evidence of positive selection of gene-by-gene MKT analyses. G3 (Bethesda, Md.). PMID 35976111 DOI: 10.1093/g3journal/jkac206  0.804
2021 Colomer-Vilaplana A, Murga-Moreno J, Canalda-Baltrons A, Inserte C, Soto D, Coronado-Zamora M, Barbadilla A, Casillas S. PopHumanVar: an interactive application for the functional characterization and prioritization of adaptive genomic variants in humans. Nucleic Acids Research. PMID 34664660 DOI: 10.1093/nar/gkab925  0.821
2021 Kapun M, Nunez JCB, Bogaerts-Márquez M, Murga-Moreno J, Paris M, Outten J, Coronado-Zamora M, Tern C, Rota-Stabelli O, García Guerreiro MP, Casillas S, Orengo DJ, Puerma E, Kankare M, Ometto L, et al. Drosophila Evolution over Space and Time (DEST) - A New Population Genomics Resource. Molecular Biology and Evolution. PMID 34469576 DOI: 10.1093/molbev/msab259  0.822
2020 Rodriguez-Galindo M, Casillas S, Weghorn D, Barbadilla A. Germline de novo mutation rates on exons versus introns in humans. Nature Communications. 11: 3304. PMID 32620809 DOI: 10.1038/S41467-020-17162-Z  0.784
2019 Murga-Moreno J, Coronado-Zamora M, Hervas S, Casillas S, Barbadilla A. iMKT: the integrative McDonald and Kreitman test. Nucleic Acids Research. PMID 31081014 DOI: 10.1093/Nar/Gkz372  0.832
2018 Murga-Moreno J, Coronado-Zamora M, Bodelón A, Barbadilla A, Casillas S. PopHumanScan: the online catalog of human genome adaptation. Nucleic Acids Research. PMID 30335169 DOI: 10.1093/Nar/Gky959  0.813
2018 Guillén Y, Casillas S, Ruiz A. Genome-wide patterns of sequence divergence of protein-coding genes between Drosophila buzzatii and D. mojavensis. The Journal of Heredity. PMID 30124907 DOI: 10.1093/jhered/esy041  0.746
2017 Casillas S, Mulet R, Villegas-Mirón P, Hervas S, Sanz E, Velasco D, Bertranpetit J, Laayouni H, Barbadilla A. PopHuman: the human population genomics browser. Nucleic Acids Research. PMID 29059408 DOI: 10.1093/Nar/Gkx943  0.842
2017 Hervas S, Sanz E, Casillas S, Pool JE, Barbadilla A. PopFly: the Drosophila population genomics browser. Bioinformatics (Oxford, England). PMID 28472360 DOI: 10.1093/Bioinformatics/Btx301  0.837
2017 Casillas S, Barbadilla A. Molecular Population Genetics. Genetics. 205: 1003-1035. PMID 28270526 DOI: 10.1534/Genetics.116.196493  0.803
2015 Puig M, Casillas S, Villatoro S, Cáceres M. Human inversions and their functional consequences. Briefings in Functional Genomics. 14: 369-79. PMID 25998059 DOI: 10.1093/bfgp/elv020  0.75
2015 Guillén Y, Rius N, Delprat A, Williford A, Muyas F, Puig M, Casillas S, Ràmia M, Egea R, Negre B, Mir G, Camps J, Moncunill V, Ruiz-Ruano FJ, Cabrero J, et al. Genomics of ecological adaptation in cactophilic Drosophila. Genome Biology and Evolution. 7: 349-66. PMID 25552534 DOI: 10.1093/Gbe/Evu291  0.793
2014 Martínez-Fundichely A, Casillas S, Egea R, Ràmia M, Barbadilla A, Pantano L, Puig M, Cáceres M. InvFEST, a database integrating information of polymorphic inversions in the human genome. Nucleic Acids Research. 42: D1027-32. PMID 24253300 DOI: 10.1093/Nar/Gkt1122  0.822
2013 Prado-Martinez J, Hernando-Herraez I, Lorente-Galdos B, Dabad M, Ramirez O, Baeza-Delgado C, Morcillo-Suarez C, Alkan C, Hormozdiari F, Raineri E, Estellé J, Fernandez-Callejo M, Valles M, Ritscher L, Schöneberg T, ... ... Casillas S, et al. The genome sequencing of an albino Western lowland gorilla reveals inbreeding in the wild. Bmc Genomics. 14: 363. PMID 23721540 DOI: 10.1186/1471-2164-14-363  0.802
2012 Mackay TF, Richards S, Stone EA, Barbadilla A, Ayroles JF, Zhu D, Casillas S, Han Y, Magwire MM, Cridland JM, Richardson MF, Anholt RR, Barrón M, Bess C, Blankenburg KP, et al. The Drosophila melanogaster Genetic Reference Panel. Nature. 482: 173-8. PMID 22318601 DOI: 10.1038/Nature10811  0.822
2012 Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. PopDrowser: the Population Drosophila Browser. Bioinformatics (Oxford, England). 28: 595-6. PMID 22180410 DOI: 10.1093/Bioinformatics/Btr691  0.839
2010 Miquel M, López-Ribera I, Ràmia M, Casillas S, Barbadilla A, Vicient CM. MASISH: a database for gene expression in maize seeds. Bioinformatics (Oxford, England). 27: 435-6. PMID 21134893 DOI: 10.1093/Bioinformatics/Btq654  0.786
2010 Ràmia M, Librado P, Casillas S, Rozas J, Barbadilla A. The Drosophila genome variation browser F1000research. 1. DOI: 10.7490/F1000Research.279.1  0.822
2008 Egea R, Casillas S, Barbadilla A. Standard and generalized McDonald-Kreitman test: a website to detect selection by comparing different classes of DNA sites. Nucleic Acids Research. 36: W157-62. PMID 18515345 DOI: 10.1093/Nar/Gkn337  0.802
2007 Casillas S, Egea R, Petit N, Bergman CM, Barbadilla A. Drosophila polymorphism database (DPDB): a portal for nucleotide polymorphism in Drosophila. Fly. 1: 205-11. PMID 18820438 DOI: 10.4161/Fly.5043  0.827
2007 Casillas S, Barbadilla A, Bergman CM. Purifying selection maintains highly conserved noncoding sequences in Drosophila. Molecular Biology and Evolution. 24: 2222-34. PMID 17646256 DOI: 10.1093/Molbev/Msm150  0.839
2007 Petit N, Casillas S, Ruiz A, Barbadilla A. Protein polymorphism is negatively correlated with conservation of intronic sequences and complexity of expression patterns in Drosophila melanogaster. Journal of Molecular Evolution. 64: 511-8. PMID 17460807 DOI: 10.1007/S00239-006-0047-5  0.799
2007 Egea R, Casillas S, Fernández E, Senar MA, Barbadilla A. MamPol: a database of nucleotide polymorphism in the Mammalia class. Nucleic Acids Research. 35: D624-9. PMID 17142236 DOI: 10.1093/Nar/Gkl833  0.818
2006 Casillas S, Negre B, Barbadilla A, Ruiz A. Fast sequence evolution of Hox and Hox-derived genes in the genus Drosophila. Bmc Evolutionary Biology. 6: 106. PMID 17163987 DOI: 10.1186/1471-2148-6-106  0.787
2006 Casillas S, Barbadilla A. PDA v.2: improving the exploration and estimation of nucleotide polymorphism in large datasets of heterogeneous DNA. Nucleic Acids Research. 34: W632-4. PMID 16845088 DOI: 10.1093/Nar/Gkl080  0.8
2005 Casillas S, Petit N, Barbadilla A. DPDB: a database for the storage, representation and analysis of polymorphism in the Drosophila genus. Bioinformatics (Oxford, England). 21: ii26-30. PMID 16204116 DOI: 10.1093/Bioinformatics/Bti1103  0.813
2005 Negre B, Casillas S, Suzanne M, Sánchez-Herrero E, Akam M, Nefedov M, Barbadilla A, de Jong P, Ruiz A. Conservation of regulatory sequences and gene expression patterns in the disintegrating Drosophila Hox gene complex. Genome Research. 15: 692-700. PMID 15867430 DOI: 10.1101/Gr.3468605  0.79
2004 Casillas S, Barbadilla A. PDA: a pipeline to explore and estimate polymorphism in large DNA databases. Nucleic Acids Research. 32: W166-9. PMID 15215372 DOI: 10.1093/Nar/Gkh428  0.826
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