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Sebastian Kadener - Publications

Affiliations: 
Brandeis University, Waltham, MA, United States 
Area:
RNA biology, splicing, circadian rhythm’s
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42 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Herman N, Kadener S, Shifman S. The chromatin factor ROW cooperates with BEAF-32 in regulating long-range inducible genes. Embo Reports. e54720. PMID 36245419 DOI: 10.15252/embr.202254720  0.37
2022 Pamudurti NR, Patop IL, Krishnamoorthy A, Bartok O, Maya R, Lerner N, Ashwall-Fluss R, Konakondla JVV, Beatus T, Kadener S. circMbl functions in cis and in trans to regulate gene expression and physiology in a tissue-specific fashion. Cell Reports. 39: 110740. PMID 35476987 DOI: 10.1016/j.celrep.2022.110740  0.37
2021 Krishnamoorthy A, Kadener S. Using Drosophila to uncover molecular and physiological functions of circRNAs. Methods (San Diego, Calif.). PMID 33901645 DOI: 10.1016/j.ymeth.2021.04.016  0.33
2020 Pamudurti NR, Patop IL, Krishnamoorthy A, Ashwal-Fluss R, Bartok O, Kadener S. An in vivo strategy for knockdown of circular RNAs. Cell Discovery. 6: 52. PMID 32818061 DOI: 10.1038/s41421-020-0182-y  0.41
2019 Martin Anduaga A, Evantal N, Patop IL, Bartok O, Weiss R, Kadener S. Thermosensitive alternative splicing senses and mediates temperature adaptation in . Elife. 8. PMID 31702556 DOI: 10.7554/eLife.44642  0.41
2019 Foley L, Ling J, Joshi R, Evantal N, Kadener S, Emery P. PSI controls circadian period and the phase of circadian behavior under temperature cycle via splicing. Elife. 8. PMID 31702555 DOI: 10.7554/eLife.50063  0.443
2019 Patop IL, Wüst S, Kadener S. Past, present, and future of circRNAs. The Embo Journal. 38: e100836. PMID 31343080 DOI: 10.15252/embj.2018100836  0.36
2017 Pamudurti NR, Bartok O, Jens M, Ashwal-Fluss R, Stottmeister C, Ruhe L, Hanan M, Wyler E, Perez-Hernandez D, Ramberger E, Shenzis S, Samson M, Dittmar G, Landthaler M, Chekulaeva M, ... ... Kadener S, et al. Translation of CircRNAs. Molecular Cell. PMID 28344080 DOI: 10.1016/j.molcel.2017.02.021  0.424
2017 Afik S, Bartok O, Artyomov MN, Shishkin AA, Kadri S, Hanan M, Zhu X, Garber M, Kadener S. Defining the 5΄ and 3΄ landscape of the Drosophila transcriptome with Exo-seq and RNaseH-seq. Nucleic Acids Research. PMID 28335028 DOI: 10.1093/Nar/Gkx133  0.385
2016 Mezan S, Feuz JD, Deplancke B, Kadener S. PDF Signaling Is an Integral Part of the Drosophila Circadian Molecular Oscillator. Cell Reports. 17: 708-719. PMID 27732848 DOI: 10.1016/J.Celrep.2016.09.048  0.341
2015 Lerner I, Bartok O, Wolfson V, Menet JS, Weissbein U, Afik S, Haimovich D, Gafni C, Friedman N, Rosbash M, Kadener S. Clk post-transcriptional control denoises circadian transcription both temporally and spatially. Nature Communications. 6: 7056. PMID 25952406 DOI: 10.1038/Ncomms8056  0.638
2015 Bartok O, Teesalu M, Ashwall-Fluss R, Pandey V, Hanan M, Rovenko BM, Poukkula M, Havula E, Moussaieff A, Vodala S, Nahmias Y, Kadener S, Hietakangas V. The transcription factor Cabut coordinates energy metabolism and the circadian clock in response to sugar sensing. The Embo Journal. 34: 1538-53. PMID 25916830 DOI: 10.15252/Embj.201591385  0.374
2015 Stelzer Y, Bar S, Bartok O, Afik S, Ronen D, Kadener S, Benvenisty N. Differentiation of human parthenogenetic pluripotent stem cells reveals multiple tissue- and isoform-specific imprinted transcripts. Cell Reports. 11: 308-20. PMID 25843718 DOI: 10.1016/J.Celrep.2015.03.023  0.303
2015 Lerner I, Bartok O, Wolfson V, Menet JS, Weissbein U, Afik S, Haimovich D, Gafni C, Friedman N, Rosbash M, Kadener S. Clk post-transcriptional control denoises circadian transcription both temporally and spatially Nature Communications. 6. DOI: 10.1038/ncomms8056  0.57
2014 Ashwal-Fluss R, Meyer M, Pamudurti NR, Ivanov A, Bartok O, Hanan M, Evantal N, Memczak S, Rajewsky N, Kadener S. circRNA biogenesis competes with pre-mRNA splicing. Molecular Cell. 56: 55-66. PMID 25242144 DOI: 10.1016/j.molcel.2014.08.019  0.449
2014 Weiss R, Bartok O, Mezan S, Malka Y, Kadener S. Synergistic interactions between the molecular and neuronal circadian networks drive robust behavioral circadian rhythms in Drosophila melanogaster. Plos Genetics. 10: e1004252. PMID 24698952 DOI: 10.1371/journal.pgen.1004252  0.353
2013 Mezan S, Ashwal-Fluss R, Shenhav R, Garber M, Kadener S. Genome-wide assessment of post-transcriptional control in the fly brain. Frontiers in Molecular Neuroscience. 6: 49. PMID 24367289 DOI: 10.3389/fnmol.2013.00049  0.447
2013 Pandey V, Varun P, Turm H, Hagit T, Bekenstein U, Uriya B, Shifman S, Sagiv S, Kadener S, Sebastian K. A new in vivo model of pantothenate kinase-associated neurodegeneration reveals a surprising role for transcriptional regulation in pathogenesis. Frontiers in Cellular Neuroscience. 7: 146. PMID 24058333 DOI: 10.3389/Fncel.2013.00146  0.302
2013 Bartok O, Kyriacou CP, Levine J, Sehgal A, Kadener S. Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs. Proceedings. Biological Sciences / the Royal Society. 280: 20130011. PMID 23825200 DOI: 10.1098/rspb.2013.0011  0.381
2013 Melamed Z, Levy A, Ashwal-Fluss R, Lev-Maor G, Mekahel K, Atias N, Gilad S, Sharan R, Levy C, Kadener S, Ast G. Alternative splicing regulates biogenesis of miRNAs located across exon-intron junctions. Molecular Cell. 50: 869-81. PMID 23747012 DOI: 10.1016/j.molcel.2013.05.007  0.303
2012 Belacortu Y, Weiss R, Kadener S, Paricio N. Transcriptional activity and nuclear localization of Cabut, the Drosophila ortholog of vertebrate TGF-β-inducible early-response gene (TIEG) proteins. Plos One. 7: e32004. PMID 22359651 DOI: 10.1371/journal.pone.0032004  0.386
2010 van der Linden AM, Beverly M, Kadener S, Rodriguez J, Wasserman S, Rosbash M, Sengupta P. Genome-wide analysis of light- and temperature-entrained circadian transcripts in Caenorhabditis elegans. Plos Biology. 8: e1000503. PMID 20967231 DOI: 10.1371/Journal.Pbio.1000503  0.669
2009 Fathallah-Shaykh HM, Bona JL, Kadener S. Mathematical model of the Drosophila circadian clock: loop regulation and transcriptional integration. Biophysical Journal. 97: 2399-408. PMID 19883582 DOI: 10.1016/j.bpj.2009.08.018  0.411
2009 Kadener S, Menet JS, Sugino K, Horwich MD, Weissbein U, Nawathean P, Vagin VV, Zamore PD, Nelson SB, Rosbash M. A role for microRNAs in the Drosophila circadian clock. Genes & Development. 23: 2179-91. PMID 19696147 DOI: 10.1101/Gad.1819509  0.54
2009 Kadener S, Rodriguez J, Abruzzi KC, Khodor YL, Sugino K, Marr MT, Nelson S, Rosbash M. Genome-wide identification of targets of the drosha-pasha/DGCR8 complex. Rna (New York, N.Y.). 15: 537-45. PMID 19223442 DOI: 10.1261/Rna.1319309  0.695
2008 Kadener S, Menet JS, Schoer R, Rosbash M. Circadian transcription contributes to core period determination in Drosophila. Plos Biology. 6: e119. PMID 18494558 DOI: 10.1371/Journal.Pbio.0060119  0.664
2007 Rosbash M, Bradley S, Kadener S, Li Y, Luo W, Menet JS, Nagoshi E, Palm K, Schoer R, Shang Y, Tang CH. Transcriptional feedback and definition of the circadian pacemaker in Drosophila and animals. Cold Spring Harbor Symposia On Quantitative Biology. 72: 75-83. PMID 18419264 DOI: 10.1101/Sqb.2007.72.062  0.597
2007 Kadener S, Stoleru D, McDonald M, Nawathean P, Rosbash M. Clockwork Orange is a transcriptional repressor and a new Drosophila circadian pacemaker component. Genes & Development. 21: 1675-86. PMID 17578907 DOI: 10.1101/Gad.1552607  0.743
2006 Kadener S, Villella A, Kula E, Palm K, Pyza E, Botas J, Hall JC, Rosbash M. Neurotoxic protein expression reveals connections between the circadian clock and mating behavior in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 103: 13537-42. PMID 16938865 DOI: 10.1073/Pnas.0605962103  0.471
2006 Lacadie SA, Tardiff DF, Kadener S, Rosbash M. In vivo commitment to yeast cotranscriptional splicing is sensitive to transcription elongation mutants. Genes & Development. 20: 2055-66. PMID 16882983 DOI: 10.1101/Gad.1434706  0.741
2005 Fededa JP, Petrillo E, Gelfand MS, Neverov AD, Kadener S, Nogués G, Pelisch F, Baralle FE, Muro AF, Kornblihtt AR. A polar mechanism coordinates different regions of alternative splicing within a single gene. Molecular Cell. 19: 393-404. PMID 16061185 DOI: 10.1016/j.molcel.2005.06.035  0.732
2005 Brown SA, Ripperger J, Kadener S, Fleury-Olela F, Vilbois F, Rosbash M, Schibler U. PERIOD1-associated proteins modulate the negative limb of the mammalian circadian oscillator. Science (New York, N.Y.). 308: 693-6. PMID 15860628 DOI: 10.1126/Science.1107373  0.625
2003 de la Mata M, Alonso CR, Kadener S, Fededa JP, Blaustein M, Pelisch F, Cramer P, Bentley D, Kornblihtt AR. A slow RNA polymerase II affects alternative splicing in vivo. Molecular Cell. 12: 525-32. PMID 14536091 DOI: 10.1016/j.molcel.2003.08.001  0.779
2003 Nogués G, Kadener S, Cramer P, de la Mata M, Fededa JP, Blaustein M, Srebrow A, Kornblihtt AR. Control of alternative pre-mRNA splicing by RNA Pol II elongation: faster is not always better. Iubmb Life. 55: 235-41. PMID 12880204 DOI: 10.1080/1521654031000119830  0.719
2003 Allada R, Kadener S, Nandakumar N, Rosbash M. A recessive mutant of Drosophila Clock reveals a role in circadian rhythm amplitude. The Embo Journal. 22: 3367-75. PMID 12839998 DOI: 10.1093/Emboj/Cdg318  0.713
2003 Portal D, Espinosa JM, Lobo GS, Kadener S, Pereira CA, De La Mata M, Tang Z, Lin RJ, Kornblihtt AR, Baralle FE, Flawiá MM, Torres HN. An early ancestor in the evolution of splicing: a Trypanosoma cruzi serine-arginine-rich protein (TcSR) is functional in cis-splicing. Molecular and Biochemical Parasitology. 127: 37-46. PMID 12615334 DOI: 10.1016/S0166-6851(02)00301-8  0.731
2003 Portal D, Lobo GS, Kadener S, Prasad J, Espinosa JM, Pereira CA, Tang Z, Lin RJ, Manley JL, Kornblihtt AR, Flawiá MM, Torres HN. Trypanosoma cruzi TcSRPK, the first protozoan member of the SRPK family, is biochemically and functionally conserved with metazoan SR protein-specific kinases. Molecular and Biochemical Parasitology. 127: 9-21. PMID 12615332 DOI: 10.1016/S0166-6851(02)00299-2  0.648
2002 Nogues G, Kadener S, Cramer P, Bentley D, Kornblihtt AR. Transcriptional activators differ in their abilities to control alternative splicing. The Journal of Biological Chemistry. 277: 43110-4. PMID 12221105 DOI: 10.1074/jbc.M208418200  0.681
2002 Kadener S, Fededa JP, Rosbash M, Kornblihtt AR. Regulation of alternative splicing by a transcriptional enhancer through RNA pol II elongation. Proceedings of the National Academy of Sciences of the United States of America. 99: 8185-90. PMID 12060763 DOI: 10.1073/Pnas.122246099  0.754
2001 Kadener S, Cramer P, Nogués G, Cazalla D, de la Mata M, Fededa JP, Werbajh SE, Srebrow A, Kornblihtt AR. Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing. The Embo Journal. 20: 5759-68. PMID 11598018 DOI: 10.1093/emboj/20.20.5759  0.633
2001 Cramer P, Srebrow A, Kadener S, Werbajh S, de la Mata M, Melen G, Nogués G, Kornblihtt AR. Coordination between transcription and pre-mRNA processing. Febs Letters. 498: 179-82. PMID 11412852 DOI: 10.1016/S0014-5793(01)02485-1  0.697
1999 Cramer P, Cáceres JF, Cazalla D, Kadener S, Muro AF, Baralle FE, Kornblihtt AR. Coupling of transcription with alternative splicing: RNA pol II promoters modulate SF2/ASF and 9G8 effects on an exonic splicing enhancer. Molecular Cell. 4: 251-8. PMID 10488340 DOI: 10.1016/S1097-2765(00)80372-X  0.755
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