Ting Wang - Publications

Affiliations: 
Genetics Washington University, Saint Louis, St. Louis, MO 

71 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Zemke NR, Armand EJ, Wang W, Lee S, Zhou J, Li YE, Liu H, Tian W, Nery JR, Castanon RG, Bartlett A, Osteen JK, Li D, Zhuo X, Xu V, ... ... Wang T, et al. Conserved and divergent gene regulatory programs of the mammalian neocortex. Nature. 624: 390-402. PMID 38092918 DOI: 10.1038/s41586-023-06819-6  0.307
2023 Wang T, Duan S, Xu C, Wang Y, Zhang X, Xu X, Chen L, Han Z, Wu T. Pan-genome analysis of 13 Malus accessions reveals structural and sequence variations associated with fruit traits. Nature Communications. 14: 7377. PMID 37968318 DOI: 10.1038/s41467-023-43270-7  0.345
2023 Gonçalves TM, Stewart CL, Baxley SD, Xu J, Li D, Gabel HW, Wang T, Avraham O, Zhao G. Towards a comprehensive regulatory map of Mammalian Genomes. Research Square. PMID 37841836 DOI: 10.21203/rs.3.rs-3294408/v1  0.396
2023 Nan J, Ling Y, An J, Wang T, Chai M, Fu J, Wang G, Yang C, Yang Y, Han B. Genome resequencing reveals independent domestication and breeding improvement of naked oat. Gigascience. 12. PMID 37524540 DOI: 10.1093/gigascience/giad061  0.304
2023 Lawson HA, Liang Y, Wang T. Transposable elements in mammalian chromatin organization. Nature Reviews. Genetics. PMID 37286742 DOI: 10.1038/s41576-023-00609-6  0.724
2023 Liao WW, Asri M, Ebler J, Doerr D, Haukness M, Hickey G, Lu S, Lucas JK, Monlong J, Abel HJ, Buonaiuto S, Chang XH, Cheng H, Chu J, Colonna V, ... ... Wang T, et al. A draft human pangenome reference. Nature. 617: 312-324. PMID 37165242 DOI: 10.1038/s41586-023-05896-x  0.483
2023 Zhuo X, Hsu S, Purushotham D, Kuntala PK, Harrison JK, Du AY, Chen S, Li D, Wang T. Comparing genomic and epigenomic features across species using the WashU Comparative Epigenome Browser. Genome Research. PMID 37156621 DOI: 10.1101/gr.277550.122  0.357
2023 Rather SA, Wang T, Liu H, Schneider H. Characterization of the complete chloroplast genome of Dalbergia congesta (Fabaceae), an endangered legume endemic to the Nilgiri Hills of Tamil Nadu, India. Functional & Integrative Genomics. 23: 126. PMID 37067625 DOI: 10.1007/s10142-023-01047-7  0.344
2023 Choudhary MNK, Quaid K, Xing X, Schmidt H, Wang T. Widespread contribution of transposable elements to the rewiring of mammalian 3D genomes. Nature Communications. 14: 634. PMID 36746940 DOI: 10.1038/s41467-023-36364-9  0.32
2022 Zhao L, You D, Wang T, Zou ZP, Yin BC, Zhou Y, Ye BC. Acylation driven by intracellular metabolites in host cells inhibits Cas9 activity used for genome editing. Pnas Nexus. 1: pgac277. PMID 36712324 DOI: 10.1093/pnasnexus/pgac277  0.321
2022 Gu X, Zhu M, Su Y, Wang T. A Large Intergenic Spacer Leads to the Increase in Genome Size and Sequential Gene Movement around IR/SC Boundaries in the Chloroplast Genome of (Pteridaceae). International Journal of Molecular Sciences. 23. PMID 36555263 DOI: 10.3390/ijms232415616  0.301
2022 Jarvis ED, Formenti G, Rhie A, Guarracino A, Yang C, Wood J, Tracey A, Thibaud-Nissen F, Vollger MR, Porubsky D, Cheng H, Asri M, Logsdon GA, Carnevali P, Chaisson MJP, ... ... Wang T, et al. Semi-automated assembly of high-quality diploid human reference genomes. Nature. PMID 36261518 DOI: 10.1038/s41586-022-05325-5  0.539
2022 Nair S, Barrett A, Li D, Raney BJ, Lee BT, Kerpedjiev P, Ramalingam V, Pampari A, Lekschas F, Wang T, Haeussler M, Kundaje A. The dynseq browser track shows context-specific features at nucleotide resolution. Nature Genetics. PMID 36241719 DOI: 10.1038/s41588-022-01194-w  0.583
2022 Modzelewski AJ, Gan Chong J, Wang T, He L. Mammalian genome innovation through transposon domestication. Nature Cell Biology. PMID 36008480 DOI: 10.1038/s41556-022-00970-4  0.313
2022 Hao J, Liang Y, Su Y, Wang T. The Complete Mitochondrial Genome of L. Is with Highly Repetitive Sequences: Intergenomic Fragment Transfer and Phylogenetic Analysis. Genes. 13. PMID 35886070 DOI: 10.3390/genes13071287  0.306
2022 Lee HJ, Hou Y, Maeng JH, Shah NM, Chen Y, Lawson HA, Yang H, Yue F, Wang T. Epigenomic analysis reveals prevalent contribution of transposable elements to -regulatory elements, tissue-specific expression, and alternative promoters in zebrafish. Genome Research. PMID 35649578 DOI: 10.1101/gr.276052.121  0.683
2022 Wang T, Antonacci-Fulton L, Howe K, Lawson HA, Lucas JK, Phillippy AM, Popejoy AB, Asri M, Carson C, Chaisson MJP, Chang X, Cook-Deegan R, Felsenfeld AL, Fulton RS, Garrison EP, et al. The Human Pangenome Project: a global resource to map genomic diversity. Nature. 604: 437-446. PMID 35444317 DOI: 10.1038/s41586-022-04601-8  0.742
2022 Wang R, Zhao G, Wang Z, Lin Z, Jiang X, Lin S, Chan H, Hong Y, Zhang Y, Su Y, Wang T. The complete chloroplast genome of , a common and widespread filmy fern (Hymenophyllaceae). Mitochondrial Dna. Part B, Resources. 7: 128-129. PMID 34993335 DOI: 10.1080/23802359.2021.2013744  0.319
2021 Hao J, Liang Y, Zhu M, Ping J, Feng P, Su Y, Wang T. The complete chloroplast genome of L. (Ophioglossaceae) and phylogenetic analysis. Mitochondrial Dna. Part B, Resources. 6: 2730-2731. PMID 34447885 DOI: 10.1080/23802359.2021.1966333  0.317
2021 Wang Z, Wang R, Lin L, Liu R, Ma S, Hong Y, He Z, Su Y, Wang T. The complete chloroplast genome of , a common and widespread tree fern (Cyatheaceae). Mitochondrial Dna. Part B, Resources. 6: 2084-2085. PMID 34212105 DOI: 10.1080/23802359.2021.1942262  0.333
2021 Wang Z, Li N, Li Z, Liu Y, Yang P, Hong Y, He Z, Su Y, Wang T. The complete chloroplast genome of , a valuable medicinal fern. Mitochondrial Dna. Part B, Resources. 6: 423-424. PMID 33628877 DOI: 10.1080/23802359.2020.1870888  0.318
2020 Zhu M, Zhao G, Ping J, Liang Y, Feng P, Su Y, Wang T. Complete chloroplast genome of (Cyatheaceae). Mitochondrial Dna. Part B, Resources. 5: 2938-2939. PMID 33458010 DOI: 10.1080/23802359.2020.1787893  0.337
2020 Yang X, Zhu Y, Mao M, Feng Y, Wang H, Hong Y, Wang Z, Su Y, Wang T. The complete chloroplast genome sequence of , a fascinating fern with important taxonomic significance. Mitochondrial Dna. Part B, Resources. 5: 843-844. PMID 33366777 DOI: 10.1080/23802359.2020.1716640  0.33
2020 Hong Y, Huang X, Li C, Ruan X, Wang Z, Su Y, Wang T. Genome Survey Sequencing of In Vivo Mother Plant and In Vitro Plantlets of . Plants (Basel, Switzerland). 9. PMID 33261119 DOI: 10.3390/plants9121665  0.32
2020 Yang H, Luan Y, Liu T, Lee HJ, Fang L, Wang Y, Wang X, Zhang B, Jin Q, Ang KC, Xing X, Wang J, Xu J, Song F, Sriranga I, ... ... Wang T, et al. A map of cis-regulatory elements and 3D genome structures in zebrafish. Nature. PMID 33239788 DOI: 10.1038/s41586-020-2962-9  0.353
2020 Moudgil A, Li D, Hsu S, Purushotham D, Wang T, Mitra RD. The qBED track: a novel genome browser visualization for point processes. Bioinformatics (Oxford, England). PMID 32941613 DOI: 10.1093/Bioinformatics/Btaa771  0.329
2020 Flynn JA, Purushotham D, Choudhary MNK, Zhuo X, Fan C, Matt G, Li D, Wang T. Exploring the coronavirus pandemic with the WashU Virus Genome Browser. Nature Genetics. PMID 32908257 DOI: 10.1038/S41588-020-0697-Z  0.309
2020 Choudhary MN, Friedman RZ, Wang JT, Jang HS, Zhuo X, Wang T. Co-opted transposons help perpetuate conserved higher-order chromosomal structures. Genome Biology. 21: 16. PMID 31973766 DOI: 10.1186/S13059-019-1916-8  0.335
2019 Li J, Li Y, Li W, Luo H, Xi Y, Dong S, Gao M, Xu P, Zhang B, Liang Y, Zou Q, Hu X, Peng L, Zou D, Wang T, et al. Guide Positioning Sequencing identifies aberrant DNA methylation patterns that alter cell identity and tumor-immune surveillance networks. Genome Research. PMID 30670627 DOI: 10.1101/Gr.240606.118  0.364
2018 Zhou S, Zhou S, Xu R, Liu S, He Z, Wang Z, Wang T, Su Y. The complete chloroplast genome of , a reputed medicinal fern (Thelypteridaceae). Mitochondrial Dna. Part B, Resources. 3: 949-950. PMID 33490548 DOI: 10.1080/23802359.2018.1501317  0.308
2018 Liu S, Wang Z, Wang T, Su Y. The complete chloroplast genome of (Cibotiaceae), an endangered CITES medicinal fern. Mitochondrial Dna. Part B, Resources. 3: 464-465. PMID 33490515 DOI: 10.1080/23802359.2018.1462128  0.321
2018 Ding Z, Chen T, Liu S, Li S, Wang Z, Wang T, Su Y. The complete chloroplast genome of monotypic fern, (Thelypteridaceae). Mitochondrial Dna. Part B, Resources. 3: 868-869. PMID 33474348 DOI: 10.1080/23802359.2018.1502632  0.307
2018 Cai S, Cai X, Li S, Liu S, Wang Z, Wang T, Su Y. The complete chloroplast genome of (Polypodiaceae), an important ornamental and medical fern. Mitochondrial Dna. Part B, Resources. 3: 801-802. PMID 33474328 DOI: 10.1080/23802359.2018.1491347  0.303
2018 Min Y, Guan J, Li S, Liu S, Hong Y, Wang Z, Wang T, Su Y. The complete chloroplast genome of , a traditional Chinese medical fern. Mitochondrial Dna. Part B, Resources. 3: 784-785. PMID 33474322 DOI: 10.1080/23802359.2018.1491345  0.313
2018 Sun X, Kang Z, Liu S, Xu R, Wang Z, Wang T, Su Y. The complete chloroplast genome sequence of (Dennstaedtiaceae). Mitochondrial Dna. Part B, Resources. 3: 772-773. PMID 33474317 DOI: 10.1080/23802359.2018.1491344  0.305
2018 Zhang M, Xiao H, Liu S, Li S, Wang Z, Wang T, Su Y. The complete chloroplast genome sequence of medicinal fern (Polypodiaceae). Mitochondrial Dna. Part B, Resources. 3: 770-771. PMID 33474316 DOI: 10.1080/23802359.2018.1491343  0.326
2018 Wang T, Pehrsson EC, Purushotham D, Li D, Zhuo X, Zhang B, Lawson HA, Province MA, Krapp C, Lan Y, Coarfa C, Katz TA, Tang WY, Wang Z, Biswal S, et al. The NIEHS TaRGET II Consortium and environmental epigenomics. Nature Biotechnology. 36: 225-227. PMID 29509741 DOI: 10.1038/Nbt.4099  0.611
2017 Liu S, Ping J, Wang Z, Wang T, Su Y. Complete chloroplast genome of the tree fern (Cyatheaceae). Mitochondrial Dna. Part B, Resources. 3: 48-49. PMID 33474061 DOI: 10.1080/23802359.2017.1419095  0.319
2016 Huang L, Wang Z, Wang T, Su YJ. The complete chloroplast genome sequence of (Asteraceae), a noxious invasive weed to South China. Mitochondrial Dna. Part B, Resources. 1: 603-604. PMID 33473567 DOI: 10.1080/23802359.2016.1209090  0.316
2016 Amarillo IE, Nievera I, Hagan A, Huchthagowder V, Heeley J, Hollander A, Koenig J, Austin P, Wang T. Integrated small copy number variations and epigenome maps of disorders of sex development. Human Genome Variation. 3: 16012. PMID 27340555 DOI: 10.1038/hgv.2016.12  0.325
2016 Tao K, Gao L, Li J, Chen S, Su Y, Wang T. The complete chloroplast genome of Torreya fargesii (Taxaceae). Mitochondrial Dna. Part a. Dna Mapping, Sequencing, and Analysis. 27: 3512-3. PMID 27158868 DOI: 10.3109/19401736.2015.1074195  0.341
2016 Lowdon RF, Jang HS, Wang T. Evolution of Epigenetic Regulation in Vertebrate Genomes. Trends in Genetics : Tig. PMID 27080453 DOI: 10.1016/j.tig.2016.03.001  0.307
2016 Ma D, Ma A, Huang Z, Wang G, Wang T, Xia D, Ma B. Transcriptome Analysis for Identification of Genes Related to Gonad Differentiation, Growth, Immune Response and Marker Discovery in The Turbot (Scophthalmus maximus). Plos One. 11: e0149414. PMID 26925843 DOI: 10.1371/journal.pone.0149414  0.316
2016 Li J, Gao L, Chen S, Tao K, Su Y, Wang T. Evolution of short inverted repeat in cupressophytes, transfer of accD to nucleus in Sciadopitys verticillata and phylogenetic position of Sciadopityaceae. Scientific Reports. 6: 20934. PMID 26865528 DOI: 10.1038/srep20934  0.334
2015 Rang J, He H, Wang T, Ding X, Zuo M, Quan M, Sun Y, Yu Z, Hu S, Xia L. Comparative analysis of genomics and proteomics in Bacillus thuringiensis 4.0718. Plos One. 10: e0119065. PMID 25781161 DOI: 10.1371/journal.pone.0119065  0.327
2015 Kundaje A, Meuleman W, Ernst J, Bilenky M, Yen A, Heravi-Moussavi A, Kheradpour P, Zhang Z, Wang J, Ziller MJ, Amin V, Whitaker JW, Schultz MD, Ward LD, ... ... Wang T, et al. Integrative analysis of 111 reference human epigenomes. Nature. 518: 317-30. PMID 25693563 DOI: 10.1038/Nature14248  0.505
2015 Elliott G, Hong C, Xing X, Zhou X, Li D, Coarfa C, Bell RJ, Maire CL, Ligon KL, Sigaroudinia M, Gascard P, Tlsty TD, Harris RA, Schalkwyk LC, Bilenky M, ... ... Wang T, et al. Intermediate DNA methylation is a conserved signature of genome regulation. Nature Communications. 6: 6363. PMID 25691127 DOI: 10.1038/Ncomms7363  0.526
2014 Cheng Y, Ma Z, Kim BH, Wu W, Cayting P, Boyle AP, Sundaram V, Xing X, Dogan N, Li J, Euskirchen G, Lin S, Lin Y, Visel A, Kawli T, ... ... Wang T, et al. Principles of regulatory information conservation between mouse and human. Nature. 515: 371-5. PMID 25409826 DOI: 10.1038/Nature13985  0.355
2014 Yue F, Cheng Y, Breschi A, Vierstra J, Wu W, Ryba T, Sandstrom R, Ma Z, Davis C, Pope BD, Shen Y, Pervouchine DD, Djebali S, Thurman RE, Kaul R, ... ... Wang T, et al. A comparative encyclopedia of DNA elements in the mouse genome. Nature. 515: 355-64. PMID 25409824 DOI: 10.1038/Nature13992  0.36
2014 Raney BJ, Dreszer TR, Barber GP, Clawson H, Fujita PA, Wang T, Nguyen N, Paten B, Zweig AS, Karolchik D, Kent WJ. Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser Bioinformatics. 30: 1003-1005. PMID 24227676 DOI: 10.1093/Bioinformatics/Btt637  0.729
2013 Gao L, Wang B, Wang ZW, Zhou Y, Su YJ, Wang T. Plastome sequences of Lygodium japonicum and Marsilea crenata reveal the genome organization transformation from basal ferns to core leptosporangiates. Genome Biology and Evolution. 5: 1403-7. PMID 23821521 DOI: 10.1093/gbe/evt099  0.313
2013 Zhou X, Lowdon RF, Li D, Lawson HA, Madden PA, Costello JF, Wang T. Exploring long-range genome interactions using the WashU Epigenome Browser. Nature Methods. 10: 375-6. PMID 23629413 DOI: 10.1038/nmeth.2440  0.686
2013 Yi X, Gao L, Wang B, Su YJ, Wang T. The complete chloroplast genome sequence of Cephalotaxus oliveri (Cephalotaxaceae): evolutionary comparison of cephalotaxus chloroplast DNAs and insights into the loss of inverted repeat copies in gymnosperms. Genome Biology and Evolution. 5: 688-98. PMID 23538991 DOI: 10.1093/gbe/evt042  0.341
2013 Zhou X, Wang T. Using the Wash U Epigenome Browser to examine genome-wide sequencing data. Current Protocols in Bioinformatics. Unit10.10. PMID 23255151 DOI: 10.1002/0471250953.bi1010s40  0.319
2012 Nielsen CB, Younesy H, O'Geen H, Xu X, Jackson AR, Milosavljevic A, Wang T, Costello JF, Hirst M, Farnham PJ, Jones SJ. Spark: a navigational paradigm for genomic data exploration. Genome Research. 22: 2262-9. PMID 22960372 DOI: 10.1101/Gr.140665.112  0.312
2012 Xiao S, Xie D, Cao X, Yu P, Xing X, Chen CC, Musselman M, Xie M, West FD, Lewin HA, Wang T, Zhong S. Comparative epigenomic annotation of regulatory DNA. Cell. 149: 1381-92. PMID 22682255 DOI: 10.1016/j.cell.2012.04.029  0.322
2012 Zhao G, Ihuegbu N, Lee M, Schriefer L, Wang T, Stormo GD. Conserved Motifs and Prediction of Regulatory Modules in Caenorhabditis elegans. G3 (Bethesda, Md.). 2: 469-81. PMID 22540038 DOI: 10.1534/G3.111.001081  0.738
2011 Zhou X, Maricque B, Xie M, Li D, Sundaram V, Martin EA, Koebbe BC, Nielsen C, Hirst M, Farnham P, Kuhn RM, Zhu J, Smirnov I, Kent WJ, Haussler D, ... ... Wang T, et al. The Human Epigenome Browser at Washington University. Nature Methods. 8: 989-90. PMID 22127213 DOI: 10.1038/Nmeth.1772  0.394
2011 Grimm AA, Brace CS, Wang T, Stormo GD, Imai S. A nutrient-sensitive interaction between Sirt1 and HNF-1α regulates Crp expression. Aging Cell. 10: 305-17. PMID 21176092 DOI: 10.1111/J.1474-9726.2010.00667.X  0.524
2010 Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, et al. Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications. Nature Biotechnology. 28: 1097-105. PMID 20852635 DOI: 10.1038/Nbt.1682  0.489
2010 Maunakea AK, Nagarajan RP, Bilenky M, Ballinger TJ, D'Souza C, Fouse SD, Johnson BE, Hong C, Nielsen C, Zhao Y, Turecki G, Delaney A, Varhol R, Thiessen N, Shchors K, ... ... Wang T, et al. Conserved role of intragenic DNA methylation in regulating alternative promoters. Nature. 466: 253-7. PMID 20613842 DOI: 10.1038/Nature09165  0.474
2010 Rosenbloom KR, Dreszer TR, Pheasant M, Barber GP, Meyer LR, Pohl A, Raney BJ, Wang T, Hinrichs AS, Zweig AS, Fujita PA, Learned K, Rhead B, Smith KE, Kuhn RM, et al. ENCODE whole-genome data in the UCSC Genome Browser. Nucleic Acids Research. 38: D620-5. PMID 19920125 DOI: 10.1093/Nar/Gkp961  0.73
2009 Gao L, Yi X, Yang YX, Su YJ, Wang T. Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes. Bmc Evolutionary Biology. 9: 130. PMID 19519899 DOI: 10.1186/1471-2148-9-130  0.308
2009 Zhu J, Sanborn JZ, Benz S, Szeto C, Hsu F, Kuhn RM, Karolchik D, Archie J, Lenburg ME, Esserman LJ, Kent WJ, Haussler D, Wang T. The UCSC Cancer Genomics Browser. Nature Methods. 6: 239-40. PMID 19333237 DOI: 10.1038/Nmeth0409-239  0.737
2008 Riley M, Staley JT, Danchin A, Wang TZ, Brettin TS, Hauser LJ, Land ML, Thompson LS. Genomics of an extreme psychrophile, Psychromonas ingrahamii. Bmc Genomics. 9: 210. PMID 18460197 DOI: 10.1186/1471-2164-9-210  0.305
2008 Zeng J, Yan J, Wang T, Mosbrook-Davis D, Dolan KT, Christensen R, Stormo GD, Haussler D, Lathrop RH, Brachmann RK, Burgess SM. Genome wide screens in yeast to identify potential binding sites and target genes of DNA-binding proteins. Nucleic Acids Research. 36: e8. PMID 18086703 DOI: 10.1093/Nar/Gkm1117  0.676
2007 Wang T, Zeng J, Lowe CB, Sellers RG, Salama SR, Yang M, Burgess SM, Brachmann RK, Haussler D. Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53. Proceedings of the National Academy of Sciences of the United States of America. 104: 18613-8. PMID 18003932 DOI: 10.1073/Pnas.0703637104  0.71
2006 MacIsaac KD, Wang T, Gordon DB, Gifford DK, Stormo GD, Fraenkel E. An improved map of conserved regulatory sites for Saccharomyces cerevisiae. Bmc Bioinformatics. 7: 113. PMID 16522208 DOI: 10.1186/1471-2105-7-113  0.558
2005 Wang T, Stormo GD. Identifying the conserved network of cis-regulatory sites of a eukaryotic genome. Proceedings of the National Academy of Sciences of the United States of America. 102: 17400-5. PMID 16301543 DOI: 10.1073/pnas.0505147102  0.615
2004 Hu Y, Wang T, Stormo GD, Gordon JI. RNA interference of achaete-scute homolog 1 in mouse prostate neuroendocrine cells reveals its gene targets and DNA binding sites. Proceedings of the National Academy of Sciences of the United States of America. 101: 5559-64. PMID 15060276 DOI: 10.1073/pnas.0306988101  0.505
2003 Wang T, Stormo GD. Combining phylogenetic data with co-regulated genes to identify regulatory motifs. Bioinformatics (Oxford, England). 19: 2369-80. PMID 14668220 DOI: 10.1093/bioinformatics/btg329  0.536
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