| Year |
Citation |
Score |
| 2024 |
You H, Tang D, Liu H, Zhou Y, Li Y, Shen Y, Gong Z, Yu H, Gu M, Jiang J, Zhang T, Cheng Z. Chromosome ends initiate homologous chromosome pairing during rice meiosis. Plant Physiology. PMID 38478471 DOI: 10.1093/plphys/kiae152 |
0.595 |
|
| 2024 |
Dias S, de Oliveira Bustamante F, do Vale Martins L, da Costa VA, Montenegro C, Oliveira ARDS, de Lima GS, Braz GT, Jiang J, da Costa AF, Benko-Iseppon AM, Brasileiro-Vidal AC. Translocations and inversions: major chromosomal rearrangements during Vigna (Leguminosae) evolution. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 137: 29. PMID 38261028 DOI: 10.1007/s00122-024-04546-8 |
0.845 |
|
| 2023 |
Hamilton JP, Vaillancourt B, Wood JC, Wang H, Jiang J, Soltis DE, Buell CR, Soltis PS. Chromosome-scale genome assembly of the 'Munstead' cultivar of Lavandula angustifolia. Bmc Genomic Data. 24: 75. PMID 38093190 DOI: 10.1186/s12863-023-01181-y |
0.485 |
|
| 2022 |
Zhang A, Li X, Zhao H, Jiang J, Zhang W. Genome-Wide Identification of Open Chromatin in Plants Using MH-Seq. Methods in Molecular Biology (Clifton, N.J.). 2594: 29-43. PMID 36264486 DOI: 10.1007/978-1-0716-2815-7_3 |
0.327 |
|
| 2022 |
Shi P, Sun H, Liu G, Zhang X, Zhou J, Song R, Xiao J, Yuan C, Sun L, Wang Z, Lou Q, Jiang J, Wang X, Wang H. Chromosome painting reveals inter-chromosomal rearrangements and evolution of subgenome D of wheat. The Plant Journal : For Cell and Molecular Biology. PMID 35998122 DOI: 10.1111/tpj.15926 |
0.588 |
|
| 2022 |
Planta J, Liang YY, Xin H, Chansler MT, Prather LA, Jiang N, Jiang J, Childs KL. Chromosome scale genome assemblies and annotations for Poales species Carex cristatella, Carex scoparia, Juncus effusus and Juncus inflexus. G3 (Bethesda, Md.). PMID 35976112 DOI: 10.1093/g3journal/jkac211 |
0.523 |
|
| 2022 |
Hoopes G, Meng X, Hamilton JP, Achakkagari SR, de Alves Freitas Guesdes F, Bolger ME, Coombs JJ, Esselink D, Kaiser NR, Kodde L, Kyriakidou M, Lavrijssen B, van Lieshout N, Shereda R, Tuttle HK, ... ... Jiang J, et al. Phased, chromosome-scale genome assemblies of tetraploid potato reveals a complex genome, transcriptome, and predicted proteome landscape underpinning genetic diversity. Molecular Plant. PMID 35026436 DOI: 10.1016/j.molp.2022.01.003 |
0.496 |
|
| 2021 |
Yu F, Zhao X, Chai J, Ding X, Li X, Huang Y, Wang X, Wu J, Zhang M, Yang Q, Deng Z, Jiang J. Chromosome-specific painting unveils chromosomal fusions and distinct allopolyploid species in the Saccharum complex. The New Phytologist. PMID 34874076 DOI: 10.1111/nph.17905 |
0.624 |
|
| 2021 |
Comai L, Amundson KR, Ordoñez B, Zhao X, Braz GT, Jiang J, Henry IM. LD-CNV: rapid and simple discovery of chromosomal translocations using linkage disequilibrium between copy number variable loci. Genetics. 219. PMID 34740239 DOI: 10.1093/genetics/iyab137 |
0.847 |
|
| 2021 |
Huang Y, Huang W, Meng Z, Braz GT, Li Y, Wang K, Wang H, Lai J, Jiang J, Dong Z, Jin W. Megabase-scale presence-absence variation with Tripsacum origin was under selection during maize domestication and adaptation. Genome Biology. 22: 237. PMID 34416918 DOI: 10.1186/s13059-021-02448-2 |
0.759 |
|
| 2021 |
de Oliveira Bustamante F, do Nascimento TH, Montenegro C, Dias S, do Vale Martins L, Braz GT, Benko-Iseppon AM, Jiang J, Pedrosa-Harand A, Brasileiro-Vidal AC. Oligo-FISH barcode in beans: a new chromosome identification system. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 34368889 DOI: 10.1007/s00122-021-03921-z |
0.866 |
|
| 2021 |
Zhang T, Liu G, Zhao H, Braz GT, Jiang J. Chorus2: design of genome-scale oligonucleotide-based probes for fluorescence in situ hybridization. Plant Biotechnology Journal. PMID 33960617 DOI: 10.1111/pbi.13610 |
0.799 |
|
| 2021 |
do Vale Martins L, de Oliveira Bustamante F, da Silva Oliveira AR, da Costa AF, de Lima Feitoza L, Liang Q, Zhao H, Benko-Iseppon AM, Muñoz-Amatriaín M, Pedrosa-Harand A, Jiang J, Brasileiro-Vidal AC. BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris. Chromosoma. PMID 33909141 DOI: 10.1007/s00412-021-00758-9 |
0.627 |
|
| 2021 |
Brose J, Lau KH, Dang TTT, Hamilton JP, Martins LDV, Hamberger B, Hamberger B, Jiang J, O'Connor SE, Buell CR. The Mitragyna speciosa (Kratom) Genome: A resource for data-mining potent pharmaceuticals that impact human health. G3 (Bethesda, Md.). PMID 33677570 DOI: 10.1093/g3journal/jkab058 |
0.4 |
|
| 2020 |
Braz GT, Yu F, Zhao H, Deng Z, Birchler JA, Jiang J. Preferential meiotic chromosome pairing among homologous chromosomes with cryptic sequence variation in tetraploid maize. The New Phytologist. PMID 33222183 DOI: 10.1111/nph.17098 |
0.844 |
|
| 2020 |
Pham GM, Hamilton JP, Wood JC, Burke JT, Zhao H, Vaillancourt B, Ou S, Jiang J, Buell CR. Construction of a chromosome-scale long-read reference genome assembly for potato. Gigascience. 9. PMID 32964225 DOI: 10.1093/gigascience/giaa100 |
0.435 |
|
| 2020 |
Hamilton JP, Godden GT, Lanier E, Bhat WW, Kinser TJ, Vaillancourt B, Wang H, Wood JC, Jiang J, Soltis PS, Soltis DE, Hamberger B, Buell CR. Generation of a chromosome-scale genome assembly of the insect-repellent terpenoid-producing Lamiaceae species, Callicarpa americana. Gigascience. 9. PMID 32893861 DOI: 10.1093/Gigascience/Giaa093 |
0.354 |
|
| 2020 |
He L, Zhao H, He J, Yang Z, Guan B, Chen K, Hong Q, Wang J, Liu J, Jiang J. Extraordinarily conserved chromosomal synteny of Citrus species revealed by chromosome-specific painting. The Plant Journal : For Cell and Molecular Biology. PMID 32578280 DOI: 10.1111/tpj.14894 |
0.648 |
|
| 2020 |
Braz GT, Yu F, do Vale Martins L, Jiang J. Fluorescent In Situ Hybridization Using Oligonucleotide-Based Probes. Methods in Molecular Biology (Clifton, N.J.). 2148: 71-83. PMID 32394375 DOI: 10.1007/978-1-0716-0623-0_4 |
0.848 |
|
| 2020 |
Braz GT, do Vale Martins L, Zhang T, Albert PS, Birchler JA, Jiang J. A universal chromosome identification system for maize and wild Zea species. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 32219602 DOI: 10.1007/S10577-020-09630-5 |
0.849 |
|
| 2019 |
do Vale Martins L, Yu F, Zhao H, Dennison T, Lauter N, Wang H, Deng Z, Thompson A, Semrau K, Rouillard JM, Birchler JA, Jiang J. Meiotic crossovers characterized by haplotype-specific chromosome painting in maize. Nature Communications. 10: 4604. PMID 31601818 DOI: 10.1038/S41467-019-12646-Z |
0.521 |
|
| 2019 |
Xin H, Zhang T, Wu Y, Zhang W, Zhang P, Xi M, Jiang J. An extraordinarily stable karyotype of the woody Populus species revealed by chromosome painting. The Plant Journal : For Cell and Molecular Biology. PMID 31529535 DOI: 10.1111/tpj.14536 |
0.638 |
|
| 2019 |
Liu X, Sun S, Wu Y, Zhou Y, Gu S, Yu H, Yi C, Gu M, Jiang J, Liu B, Zhang T, Gong Z. Dual-color oligo-FISH can reveal chromosomal variations and evolution in Oryza species. The Plant Journal : For Cell and Molecular Biology. PMID 31494982 DOI: 10.1111/tpj.14522 |
0.644 |
|
| 2019 |
Pham GM, Braz GT, Conway M, Crisovan E, Hamilton JP, Laimbeer FPE, Manrique-Carpintero N, Newton L, Douches DS, Jiang J, Veilleux RE, Buell CR. Genome-wide Inference of Somatic Translocation Events During Potato Dihaploid Production. The Plant Genome. 12. PMID 31290929 DOI: 10.3835/Plantgenome2018.10.0079 |
0.824 |
|
| 2019 |
Jiang J. Fluorescence in situ hybridization in plants: recent developments and future applications. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 30852707 DOI: 10.1007/s10577-019-09607-z |
0.57 |
|
| 2019 |
Marand AP, Zhao H, Zhang W, Zeng Z, Fang C, Jiang J. Historical Meiotic Crossover Hotspots Fueled Patterns of Evolutionary Divergence in Rice. The Plant Cell. PMID 30705136 DOI: 10.1105/tpc.18.00750 |
0.361 |
|
| 2019 |
Albert PS, Zhang T, Semrau K, Rouillard JM, Kao YH, Wang CR, Danilova TV, Jiang J, Birchler JA. Whole-chromosome paints in maize reveal rearrangements, nuclear domains, and chromosomal relationships. Proceedings of the National Academy of Sciences of the United States of America. PMID 30655344 DOI: 10.1073/Pnas.1813957116 |
0.604 |
|
| 2018 |
Wu S, Lau KH, Cao Q, Hamilton JP, Sun H, Zhou C, Eserman L, Gemenet DC, Olukolu BA, Wang H, Crisovan E, Godden GT, Jiao C, Wang X, Kitavi M, ... ... Jiang J, et al. Genome sequences of two diploid wild relatives of cultivated sweetpotato reveal targets for genetic improvement. Nature Communications. 9: 4580. PMID 30389915 DOI: 10.1038/s41467-018-06983-8 |
0.314 |
|
| 2018 |
He L, Braz GT, Torres GA, Jiang J. Chromosome painting in meiosis reveals pairing of specific chromosomes in polyploid Solanum species. Chromosoma. PMID 30242479 DOI: 10.1007/s00412-018-0682-9 |
0.813 |
|
| 2018 |
Manrique-Carpintero NC, Coombs JJ, Pham GM, Laimbeer FPE, Braz GT, Jiang J, Veilleux RE, Buell CR, Douches DS. Genome Reduction in Tetraploid Potato Reveals Genetic Load, Haplotype Variation, and Loci Associated With Agronomic Traits. Frontiers in Plant Science. 9: 944. PMID 30018631 DOI: 10.3389/Fpls.2018.00944 |
0.795 |
|
| 2018 |
Liao Y, Zhang X, Li B, Liu T, Chen J, Bai Z, Wang M, Shi J, Walling JG, Wing RA, Jiang J, Chen M. Comparison of Oryza sativa and Oryza brachyantha genomes reveals selection-driven gene escape from the centromeric regions. The Plant Cell. PMID 29967288 DOI: 10.1105/Tpc.18.00163 |
0.424 |
|
| 2018 |
Hou L, Xu M, Zhang T, Xu Z, Wang W, Zhang J, Yu M, Ji W, Zhu C, Gong Z, Gu M, Jiang J, Yu H. Chromosome painting and its applications in cultivated and wild rice. Bmc Plant Biology. 18: 110. PMID 29879904 DOI: 10.1186/s12870-018-1325-2 |
0.602 |
|
| 2018 |
Dong Z, Yu J, Li H, Huang W, Xu L, Zhao Y, Zhang T, Xu W, Jiang J, Su Z, Jin W. Transcriptional and epigenetic adaptation of maize chromosomes in Oat-Maize addition lines. Nucleic Acids Research. PMID 29579310 DOI: 10.1093/Nar/Gky209 |
0.407 |
|
| 2018 |
Yang X, Zhao H, Zhang T, Zeng Z, Zhang P, Zhu B, Han Y, Braz GT, Casler MD, Schmutz J, Jiang J. Amplification and adaptation of centromeric repeats in polyploid switchgrass species. The New Phytologist. PMID 29577299 DOI: 10.1111/nph.15098 |
0.806 |
|
| 2018 |
Koo DH, Molin WT, Saski CA, Jiang J, Putta K, Jugulam M, Friebe B, Gill BS. Extrachromosomal circular DNA-based amplification and transmission of herbicide resistance in crop weed. Proceedings of the National Academy of Sciences of the United States of America. PMID 29531028 DOI: 10.1073/pnas.1719354115 |
0.303 |
|
| 2018 |
Xin H, Zhang T, Han Y, Wu Y, Shi J, Xi M, Jiang J. Chromosome painting and comparative physical mapping of the sex chromosomes in Populus tomentosa and Populus deltoides. Chromosoma. PMID 29520650 DOI: 10.1007/s00412-018-0664-y |
0.64 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29415183 DOI: 10.1093/Nar/Gky091 |
0.433 |
|
| 2018 |
Leisner CP, Hamilton JP, Crisovan E, Manrique-Carpintero NC, Marand AP, Newton L, Pham GM, Jiang J, Douches DS, Jansky SH, Buell CR. Genome sequence of M6, a diploid inbred clone of the high glycoalkaloid-producing tuber-bearing potato species Solanum chacoense, reveals residual heterozygosity. The Plant Journal : For Cell and Molecular Biology. PMID 29405524 DOI: 10.1111/tpj.13857 |
0.483 |
|
| 2018 |
Zhao D, Hamilton JP, Vaillancourt B, Zhang W, Eizenga GC, Cui Y, Jiang J, Buell CR, Jiang N. The unique epigenetic features of Pack-MULEs and their impact on chromosomal base composition and expression spectrum. Nucleic Acids Research. PMID 29365184 DOI: 10.1093/nar/gky025 |
0.433 |
|
| 2017 |
Braz GT, He L, Zhao H, Zhang T, Semrau K, Rouillard JM, Torres GA, Jiang J. Comparative oligo-FISH Mapping: An Efficient and Powerful Methodology to Reveal Karyotypic and Chromosomal Evolution. Genetics. PMID 29242292 DOI: 10.1534/genetics.117.300344 |
0.821 |
|
| 2017 |
Marand AP, Jansky SH, Zhao H, Leisner CP, Zhu X, Zeng Z, Crisovan E, Newton L, Hamernik AJ, Veilleux RE, Buell CR, Jiang J. Meiotic crossovers are associated with open chromatin and enriched with Stowaway transposons in potato. Genome Biology. 18: 203. PMID 29084572 DOI: 10.1186/S13059-017-1326-8 |
0.329 |
|
| 2017 |
Zhao H, Zeng Z, Koo DH, Gill BS, Birchler JA, Jiang J. Recurrent establishment of de novo centromeres in the pericentromeric region of maize chromosome 3. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. PMID 28831743 DOI: 10.1007/S10577-017-9564-X |
0.558 |
|
| 2017 |
Bilinski P, Han Y, Hufford MB, Lorant A, Zhang P, Estep MC, Jiang J, Ross-Ibarra J. Genomic abundance is not predictive of tandem repeat localization in grass genomes. Plos One. 12: e0177896. PMID 28570674 DOI: 10.1371/Journal.Pone.0177896 |
0.489 |
|
| 2017 |
Koo DH, Singh B, Jiang J, Friebe B, Gill BS, Chastain PD, Manne U, Tiwari HK, Singh KK. Single-molecule mtDNA fiber FISH for analyzing numtogenesis. Analytical Biochemistry. PMID 28322800 DOI: 10.1016/J.Ab.2017.03.015 |
0.347 |
|
| 2016 |
Hardigan MA, Crisovan E, Hamiltion JP, Kim J, Laimbeer P, Leisner CP, Manrique-Carpintero NC, Newton L, Pham GM, Vaillancourt B, Yang X, Zeng Z, Douches D, Jiang J, Veilleux RE, et al. Genome reduction uncovers a large dispensable genome and adaptive role for copy number variation in asexually propagated Solanum tuberosum. The Plant Cell. PMID 26772996 DOI: 10.1105/Tpc.15.00538 |
0.384 |
|
| 2015 |
Khrustaleva L, Jiang J, Havey MJ. High-resolution tyramide-FISH mapping of markers tightly linked to the male-fertility restoration (Ms) locus of onion. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. PMID 26704420 DOI: 10.1007/s00122-015-2646-2 |
0.463 |
|
| 2015 |
Zhao H, Zhu X, Wang K, Gent JI, Zhang W, Dawe RK, Jiang J. Gene Expression and Chromatin Modifications Associated with Maize Centromeres. G3 (Bethesda, Md.). PMID 26564952 DOI: 10.1534/G3.115.022764 |
0.362 |
|
| 2015 |
Lough AN, Faries KM, Koo DH, Hussain A, Roark LM, Langewisch TL, Backes T, Kremling KA, Jiang J, Birchler JA, Newton KJ. Cytogenetic and Sequence Analyses of Mitochondrial DNA Insertions in Nuclear Chromosomes of Maize. G3 (Bethesda, Md.). PMID 26333837 DOI: 10.1534/G3.115.020677 |
0.485 |
|
| 2015 |
Gent JI, Wang K, Jiang J, Dawe RK. Stable Patterns of CENH3 Occupancy Through Maize Lineages Containing Genetically Similar Centromeres. Genetics. PMID 26063660 DOI: 10.1534/Genetics.115.177360 |
0.415 |
|
| 2015 |
Han Y, Zhang T, Thammapichai P, Weng Y, Jiang J. Chromosome-Specific Painting in Cucumis Species Using Bulked Oligonucleotides. Genetics. 200: 771-9. PMID 25971668 DOI: 10.1534/genetics.115.177642 |
0.662 |
|
| 2015 |
Gao D, Jiang N, Wing RA, Jiang J, Jackson SA. Transposons play an important role in the evolution and diversification of centromeres among closely related species. Frontiers in Plant Science. 6: 216. PMID 25904926 DOI: 10.3389/Fpls.2015.00216 |
0.438 |
|
| 2015 |
Zhang W, Jiang J. Genome-wide mapping of DNase I hypersensitive sites in plants. Methods in Molecular Biology (Clifton, N.J.). 1284: 71-89. PMID 25757768 DOI: 10.1007/978-1-4939-2444-8_4 |
0.383 |
|
| 2015 |
Jiang J. The 'dark matter' in the plant genomes: non-coding and unannotated DNA sequences associated with open chromatin. Current Opinion in Plant Biology. 24: 17-23. PMID 25625239 DOI: 10.1016/j.pbi.2015.01.005 |
0.326 |
|
| 2015 |
Iovene M, Yu Q, Ming R, Jiang J. Evidence for emergence of sex-determining gene(s) in a centromeric region in Vasconcellea parviflora. Genetics. 199: 413-21. PMID 25480779 DOI: 10.1534/genetics.114.173021 |
0.613 |
|
| 2014 |
Zhang W, Zhang T, Wu Y, Jiang J. Open chromatin in plant genomes. Cytogenetic and Genome Research. 143: 18-27. PMID 24923879 DOI: 10.1159/000362827 |
0.335 |
|
| 2014 |
Cook DE, Bayless AM, Wang K, Guo X, Song Q, Jiang J, Bent AF. Distinct Copy Number, Coding Sequence, and Locus Methylation Patterns Underlie Rhg1-Mediated Soybean Resistance to Soybean Cyst Nematode. Plant Physiology. 165: 630-647. PMID 24733883 DOI: 10.1104/Pp.114.235952 |
0.32 |
|
| 2014 |
Zhang H, Koblížková A, Wang K, Gong Z, Oliveira L, Torres GA, Wu Y, Zhang W, Novák P, Buell CR, Macas J, Jiang J. Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres. The Plant Cell. 26: 1436-1447. PMID 24728646 DOI: 10.1105/tpc.114.123877 |
0.805 |
|
| 2014 |
Wang L, Zeng Z, Zhang W, Jiang J. Three potato centromeres are associated with distinct haplotypes with or without megabase-sized satellite repeat arrays. Genetics. 196: 397-401. PMID 24318533 DOI: 10.1534/genetics.113.160135 |
0.452 |
|
| 2014 |
Yang L, Koo DH, Li D, Zhang T, Jiang J, Luan F, Renner SS, Hénaff E, Sanseverino W, Garcia-Mas J, Casacuberta J, Senalik DA, Simon PW, Chen J, Weng Y. Next-generation sequencing, FISH mapping and synteny-based modeling reveal mechanisms of decreasing dysploidy in Cucumis. The Plant Journal : For Cell and Molecular Biology. 77: 16-30. PMID 24127692 DOI: 10.1111/Tpj.12355 |
0.523 |
|
| 2014 |
Wang K, Wu Y, Zhang W, Dawe RK, Jiang J. Maize centromeres expand and adopt a uniform size in the genetic background of oat. Genome Research. 24: 107-16. PMID 24100079 DOI: 10.1101/gr.160887.113 |
0.522 |
|
| 2013 |
Duangpan S, Zhang W, Wu Y, Jansky SH, Jiang J. Insertional mutagenesis using Tnt1 retrotransposon in potato. Plant Physiology. 163: 21-9. PMID 23898040 DOI: 10.1104/pp.113.221903 |
0.374 |
|
| 2013 |
Iovene M, Zhang T, Lou Q, Buell CR, Jiang J. Copy number variation in potato - an asexually propagated autotetraploid species. The Plant Journal : For Cell and Molecular Biology. 75: 80-9. PMID 23573982 DOI: 10.1111/tpj.12200 |
0.486 |
|
| 2013 |
Chen J, Huang Q, Gao D, Wang J, Lang Y, Liu T, Li B, Bai Z, Luis Goicoechea J, Liang C, Chen C, Zhang W, Sun S, Liao Y, Zhang X, ... ... Jiang J, et al. Whole-genome sequencing of Oryza brachyantha reveals mechanisms underlying Oryza genome evolution. Nature Communications. 4: 1595. PMID 23481403 DOI: 10.1038/Ncomms2596 |
0.403 |
|
| 2013 |
Zhang H, Bian Y, Gou X, Zhu B, Xu C, Qi B, Li N, Rustgi S, Zhou H, Han F, Jiang J, von Wettstein D, Liu B. Persistent whole-chromosome aneuploidy is generally associated with nascent allohexaploid wheat. Proceedings of the National Academy of Sciences of the United States of America. 110: 3447-52. PMID 23401544 DOI: 10.1073/pnas.1300153110 |
0.612 |
|
| 2013 |
He L, Liu J, Torres GA, Zhang H, Jiang J, Xie C. Interstitial telomeric repeats are enriched in the centromeres of chromosomes in Solanum species. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 21: 5-13. PMID 23250588 DOI: 10.1007/s10577-012-9332-x |
0.855 |
|
| 2013 |
Walling JG, Zhang W, Jiang J. Fluorescence in situ hybridization techniques for cytogenetic and genomic analyses. Methods in Molecular Biology (Clifton, N.J.). 956: 13-27. PMID 23135841 DOI: 10.1007/978-1-62703-194-3_2 |
0.523 |
|
| 2012 |
Gong Z, Wu Y, Koblízková A, Torres GA, Wang K, Iovene M, Neumann P, Zhang W, Novák P, Buell CR, Macas J, Jiang J. Repeatless and repeat-based centromeres in potato: implications for centromere evolution. The Plant Cell. 24: 3559-74. PMID 22968715 DOI: 10.1105/tpc.112.100511 |
0.814 |
|
| 2012 |
Wang J, Na JK, Yu Q, Gschwend AR, Han J, Zeng F, Aryal R, VanBuren R, Murray JE, Zhang W, Navajas-Pérez R, Feltus FA, Lemke C, Tong EJ, Chen C, ... ... Jiang J, et al. Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution. Proceedings of the National Academy of Sciences of the United States of America. 109: 13710-5. PMID 22869747 DOI: 10.1073/Pnas.1207833109 |
0.483 |
|
| 2012 |
Pendinen G, Spooner DM, Jiang J, Gavrilenko T. Genomic in situ hybridization reveals both auto- and allopolyploid origins of different North and Central American hexaploid potato (Solanum sect. Petota) species. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 55: 407-15. PMID 22594521 DOI: 10.1139/g2012-027 |
0.454 |
|
| 2012 |
Na JK, Wang J, Murray JE, Gschwend AR, Zhang W, Yu Q, Navajas-Pérez R, Feltus FA, Chen C, Kubat Z, Moore PH, Jiang J, Paterson AH, Ming R. Construction of physical maps for the sex-specific regions of papaya sex chromosomes. Bmc Genomics. 13: 176. PMID 22568889 DOI: 10.1186/1471-2164-13-176 |
0.48 |
|
| 2012 |
Yang L, Koo DH, Li Y, Zhang X, Luan F, Havey MJ, Jiang J, Weng Y. Chromosome rearrangements during domestication of cucumber as revealed by high-density genetic mapping and draft genome assembly. The Plant Journal : For Cell and Molecular Biology. 71: 895-906. PMID 22487099 DOI: 10.1111/j.1365-313X.2012.05017.x |
0.612 |
|
| 2012 |
Zhang H, Phan BH, Wang K, Artelt BJ, Jiang J, Parrott WA, Dawe RK. Stable integration of an engineered megabase repeat array into the maize genome. The Plant Journal : For Cell and Molecular Biology. 70: 357-65. PMID 22233334 DOI: 10.1111/j.1365-313X.2011.04867.x |
0.355 |
|
| 2012 |
Gent JI, Dong Y, Jiang J, Dawe RK. Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications. Nucleic Acids Research. 40: 1550-60. PMID 22058126 DOI: 10.1093/Nar/Gkr862 |
0.335 |
|
| 2011 |
Torres GA, Gong Z, Iovene M, Hirsch CD, Buell CR, Bryan GJ, Novák P, Macas J, Jiang J. Organization and evolution of subtelomeric satellite repeats in the potato genome. G3 (Bethesda, Md.). 1: 85-92. PMID 22384321 DOI: 10.1534/g3.111.000125 |
0.815 |
|
| 2011 |
Fan C, Walling JG, Zhang J, Hirsch CD, Jiang J, Wing RA. Conservation and purifying selection of transcribed genes located in a rice centromere. The Plant Cell. 23: 2821-30. PMID 21856794 DOI: 10.1105/Tpc.111.085605 |
0.401 |
|
| 2011 |
Xu X, Pan S, Cheng S, Zhang B, Mu D, Ni P, Zhang G, Yang S, Li R, Wang J, Orjeda G, Guzman F, Torres M, Lozano R, ... ... Jiang J, et al. Genome sequence and analysis of the tuber crop potato. Nature. 475: 189-95. PMID 21743474 DOI: 10.1038/Nature10158 |
0.761 |
|
| 2011 |
Iovene M, Cavagnaro PF, Senalik D, Buell CR, Jiang J, Simon PW. Comparative FISH mapping of Daucus species (Apiaceae family). Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 19: 493-506. PMID 21547583 DOI: 10.1007/s10577-011-9202-y |
0.649 |
|
| 2011 |
Koo DH, Han F, Birchler JA, Jiang J. Distinct DNA methylation patterns associated with active and inactive centromeres of the maize B chromosome. Genome Research. 21: 908-14. PMID 21518739 DOI: 10.1101/Gr.116202.110 |
0.443 |
|
| 2011 |
Lin L, Koo DH, Zhang W, St Peter J, Jiang J. De novo assembly of potential linear artificial chromosome constructs capped with expansive telomeric repeats. Plant Methods. 7: 10. PMID 21496260 DOI: 10.1186/1746-4811-7-10 |
0.396 |
|
| 2011 |
Koo DH, Jiang J. Super-stretched pachytene chromosomes for plant molecular cytogenetic mapping. Methods in Molecular Biology (Clifton, N.J.). 701: 239-45. PMID 21181534 DOI: 10.1007/978-1-61737-957-4_13 |
0.525 |
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| 2010 |
Zhang W, Friebe B, Gill BS, Jiang J. Centromere inactivation and epigenetic modifications of a plant chromosome with three functional centromeres. Chromosoma. 119: 553-63. PMID 20499078 DOI: 10.1007/S00412-010-0278-5 |
0.568 |
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| 2010 |
Lou Q, Iovene M, Spooner DM, Buell CR, Jiang J. Evolution of chromosome 6 of Solanum species revealed by comparative fluorescence in situ hybridization mapping. Chromosoma. 119: 435-42. PMID 20352244 DOI: 10.1007/s00412-010-0269-6 |
0.586 |
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| 2010 |
Gaines TA, Zhang W, Wang D, Bukun B, Chisholm ST, Shaner DL, Nissen SJ, Patzoldt WL, Tranel PJ, Culpepper AS, Grey TL, Webster TM, Vencill WK, Sammons RD, Jiang J, et al. Gene amplification confers glyphosate resistance in Amaranthus palmeri. Proceedings of the National Academy of Sciences of the United States of America. 107: 1029-34. PMID 20018685 DOI: 10.1073/Pnas.0906649107 |
0.305 |
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| 2009 |
Schnable PS, Ware D, Fulton RS, Stein JC, Wei F, Pasternak S, Liang C, Zhang J, Fulton L, Graves TA, Minx P, Reily AD, Courtney L, Kruchowski SS, Tomlinson C, ... ... Jiang J, et al. The B73 maize genome: complexity, diversity, and dynamics. Science (New York, N.Y.). 326: 1112-5. PMID 19965430 DOI: 10.1126/Science.1178534 |
0.451 |
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| 2009 |
Wolfgruber TK, Sharma A, Schneider KL, Albert PS, Koo DH, Shi J, Gao Z, Han F, Lee H, Xu R, Allison J, Birchler JA, Jiang J, Dawe RK, Presting GG. Maize centromere structure and evolution: sequence analysis of centromeres 2 and 5 reveals dynamic Loci shaped primarily by retrotransposons. Plos Genetics. 5: e1000743. PMID 19956743 DOI: 10.1371/Journal.Pgen.1000743 |
0.467 |
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| 2009 |
Hirsch CD, Wu Y, Yan H, Jiang J. Lineage-specific adaptive evolution of the centromeric protein CENH3 in diploid and allotetraploid Oryza species. Molecular Biology and Evolution. 26: 2877-85. PMID 19741004 DOI: 10.1093/molbev/msp208 |
0.361 |
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| 2009 |
Han Y, Zhang Z, Liu C, Liu J, Huang S, Jiang J, Jin W. Centromere repositioning in cucurbit species: implication of the genomic impact from centromere activation and inactivation. Proceedings of the National Academy of Sciences of the United States of America. 106: 14937-41. PMID 19706458 DOI: 10.1073/pnas.0904833106 |
0.651 |
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| 2009 |
Gao D, Gill N, Kim HR, Walling JG, Zhang W, Fan C, Yu Y, Ma J, SanMiguel P, Jiang N, Cheng Z, Wing RA, Jiang J, Jackson SA. A lineage-specific centromere retrotransposon in Oryza brachyantha. The Plant Journal : For Cell and Molecular Biology. 60: 820-31. PMID 19702667 DOI: 10.1111/J.1365-313X.2009.04005.X |
0.483 |
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| 2009 |
Koo DH, Jiang J. Super-stretched pachytene chromosomes for fluorescence in situ hybridization mapping and immunodetection of DNA methylation. The Plant Journal : For Cell and Molecular Biology. 59: 509-16. PMID 19392688 DOI: 10.1111/j.1365-313X.2009.03881.x |
0.58 |
|
| 2008 |
Iovene M, Grzebelus E, Carputo D, Jiang J, Simon PW. Major cytogenetic landmarks and karyotype analysis inDaucus carota and other Apiaceae. American Journal of Botany. 95: 793-804. PMID 21632405 DOI: 10.3732/ajb.0700007 |
0.646 |
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| 2008 |
Yan H, Talbert PB, Lee HR, Jett J, Henikoff S, Chen F, Jiang J. Intergenic locations of rice centromeric chromatin. Plos Biology. 6: e286. PMID 19067486 DOI: 10.1371/journal.pbio.0060286 |
0.537 |
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| 2008 |
Jin W, Lamb JC, Zhang W, Kolano B, Birchler JA, Jiang J. Histone modifications associated with both A and B chromosomes of maize. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 16: 1203-14. PMID 18987983 DOI: 10.1007/S10577-008-1269-8 |
0.477 |
|
| 2008 |
Iovene M, Wielgus SM, Simon PW, Buell CR, Jiang J. Chromatin structure and physical mapping of chromosome 6 of potato and comparative analyses with tomato. Genetics. 180: 1307-17. PMID 18791232 DOI: 10.1534/genetics.108.093179 |
0.564 |
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| 2008 |
Pendinen G, Gavrilenko T, Jiang J, Spooner DM. Allopolyploid speciation of the Mexican tetraploid potato species Solanum stoloniferum and S. hjertingii revealed by genomic in situ hybridization. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 51: 714-20. PMID 18772949 DOI: 10.1139/G08-052 |
0.517 |
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| 2008 |
Zhang W, Wang X, Yu Q, Ming R, Jiang J. DNA methylation and heterochromatinization in the male-specific region of the primitive Y chromosome of papaya. Genome Research. 18: 1938-43. PMID 18593814 DOI: 10.1101/Gr.078808.108 |
0.581 |
|
| 2008 |
Koo DH, Jiang J. Extraordinary tertiary constrictions of Tripsacum dactyloides chromosomes: implications for karyotype evolution of polyploids driven by segmental chromosome losses. Genetics. 179: 1119-23. PMID 18558656 DOI: 10.1534/genetics.108.087726 |
0.57 |
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| 2008 |
Zhu W, Ouyang S, Iovene M, O'Brien K, Vuong H, Jiang J, Buell CR. Analysis of 90 Mb of the potato genome reveals conservation of gene structures and order with tomato but divergence in repetitive sequence composition. Bmc Genomics. 9: 286. PMID 18554403 DOI: 10.1186/1471-2164-9-286 |
0.37 |
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| 2008 |
Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, ... ... Jiang J, et al. The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus). Nature. 452: 991-6. PMID 18432245 DOI: 10.1038/Nature06856 |
0.348 |
|
| 2008 |
Yu Q, Hou S, Feltus FA, Jones MR, Murray JE, Veatch O, Lemke C, Saw JH, Moore RC, Thimmapuram J, Liu L, Moore PH, Alam M, Jiang J, Paterson AH, et al. Low X/Y divergence in four pairs of papaya sex-linked genes. The Plant Journal : For Cell and Molecular Biology. 53: 124-32. PMID 17973896 DOI: 10.1111/J.1365-313X.2007.03329.X |
0.592 |
|
| 2007 |
Yu Q, Hou S, Hobza R, Feltus FA, Wang X, Jin W, Skelton RL, Blas A, Lemke C, Saw JH, Moore PH, Alam M, Jiang J, Paterson AH, Vyskot B, et al. Chromosomal location and gene paucity of the male specific region on papaya Y chromosome. Molecular Genetics and Genomics : Mgg. 278: 177-85. PMID 17520292 DOI: 10.1007/S00438-007-0243-Z |
0.628 |
|
| 2007 |
Neumann P, Yan H, Jiang J. The centromeric retrotransposons of rice are transcribed and differentially processed by RNA interference. Genetics. 176: 749-61. PMID 17409063 DOI: 10.1534/genetics.107.071902 |
0.306 |
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| 2007 |
Yan H, Jiang J. Rice as a model for centromere and heterochromatin research. Chromosome Research : An International Journal On the Molecular, Supramolecular and Evolutionary Aspects of Chromosome Biology. 15: 77-84. PMID 17295128 DOI: 10.1007/s10577-006-1104-z |
0.423 |
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| 2006 |
Jiang J, Gill BS. Current status and the future of fluorescence in situ hybridization (FISH) in plant genome research. Genome / National Research Council Canada = GéNome / Conseil National De Recherches Canada. 49: 1057-68. PMID 17110986 DOI: 10.1139/g06-076 |
0.559 |
|
| 2006 |
Lee HR, Neumann P, Macas J, Jiang J. Transcription and evolutionary dynamics of the centromeric satellite repeat CentO in rice. Molecular Biology and Evolution. 23: 2505-20. PMID 16987952 DOI: 10.1093/molbev/msl127 |
0.37 |
|
| 2006 |
Yan H, Ito H, Nobuta K, Ouyang S, Jin W, Tian S, Lu C, Venu RC, Wang GL, Green PJ, Wing RA, Buell CR, Meyers BC, Jiang J. Genomic and genetic characterization of rice Cen3 reveals extensive transcription and evolutionary implications of a complex centromere. The Plant Cell. 18: 2123-33. PMID 16877494 DOI: 10.1105/Tpc.106.043794 |
0.505 |
|
| 2005 |
Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, ... ... Jiang J, et al. Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species. Genome Research. 15: 1284-91. PMID 16109971 DOI: 10.1101/Gr.3869505 |
0.627 |
|
| 2005 |
Lee HR, Zhang W, Langdon T, Jin W, Yan H, Cheng Z, Jiang J. Chromatin immunoprecipitation cloning reveals rapid evolutionary patterns of centromeric DNA in Oryza species. Proceedings of the National Academy of Sciences of the United States of America. 102: 11793-8. PMID 16040802 DOI: 10.1073/pnas.0503863102 |
0.498 |
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| 2005 |
Tek AL, Song J, Macas J, Jiang J. Sobo, a recently amplified satellite repeat of potato, and its implications for the origin of tandemly repeated sequences. Genetics. 170: 1231-8. PMID 15911575 DOI: 10.1534/genetics.105.041087 |
0.5 |
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| 2005 |
Jin W, Lamb JC, Vega JM, Dawe RK, Birchler JA, Jiang J. Molecular and functional dissection of the maize B chromosome centromere. The Plant Cell. 17: 1412-23. PMID 15805482 DOI: 10.1105/Tpc.104.030643 |
0.38 |
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| 2005 |
Nagaki K, Neumann P, Zhang D, Ouyang S, Buell CR, Cheng Z, Jiang J. Structure, divergence, and distribution of the CRR centromeric retrotransposon family in rice. Molecular Biology and Evolution. 22: 845-55. PMID 15616142 DOI: 10.1093/Molbev/Msi069 |
0.375 |
|
| 2004 |
Tek AL, Jiang J. The centromeric regions of potato chromosomes contain megabase-sized tandem arrays of telomere-similar sequence. Chromosoma. 113: 77-83. PMID 15258808 DOI: 10.1007/s00412-004-0297-1 |
0.563 |
|
| 2004 |
Tek AL, Stevenson WR, Helgeson JP, Jiang J. Transfer of tuber soft rot and early blight resistances from Solanum brevidens into cultivated potato. Tag. Theoretical and Applied Genetics. Theoretische Und Angewandte Genetik. 109: 249-54. PMID 15052402 DOI: 10.1007/s00122-004-1638-4 |
0.325 |
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| 2004 |
Jin W, Melo JR, Nagaki K, Talbert PB, Henikoff S, Dawe RK, Jiang J. Maize centromeres: Organization and functional adaptation in the genetic background of oat Plant Cell. 16: 571-581. PMID 14973167 DOI: 10.1105/tpc.018937 |
0.556 |
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| 2004 |
Nagaki K, Cheng Z, Ouyang S, Talbert PB, Kim M, Jones KM, Henikoff S, Buell CR, Jiang J. Sequencing of a rice centromere uncovers active genes. Nature Genetics. 36: 138-45. PMID 14716315 DOI: 10.1038/Ng1289 |
0.391 |
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| 2003 |
Nagaki K, Talbert PB, Zhong CX, Dawe RK, Henikoff S, Jiang J. Chromatin immunoprecipitation reveals that the 180-bp satellite repeat is the key functional DNA element of Arabidopsis thaliana centromeres Genetics. 163: 1221-1225. PMID 12663558 |
0.314 |
|
| 2003 |
Nagaki K, Song J, Stupar RM, Parokonny AS, Yuan Q, Ouyang S, Liu J, Hsiao J, Jones KM, Dawe RK, Buell CR, Jiang J. Molecular and cytological analyses of large tracks of centromeric DNA reveal the structure and evolutionary dynamics of maize centromeres. Genetics. 163: 759-70. PMID 12618412 |
0.447 |
|
| 2002 |
Stupar RM, Song J, Tek AL, Cheng Z, Dong F, Jiang J. Highly condensed potato pericentromeric heterochromatin contains rDNA-related tandem repeats. Genetics. 162: 1435-44. PMID 12454086 |
0.379 |
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| 2002 |
Feng Q, Zhang Y, Hao P, Wang S, Fu G, Huang Y, Li Y, Zhu J, Liu Y, Hu X, Jia P, Zhang Y, Zhao Q, Ying K, Yu S, ... ... Jiang J, et al. Sequence and analysis of rice chromosome 4. Nature. 420: 316-20. PMID 12447439 DOI: 10.1038/Nature01183 |
0.595 |
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| 2002 |
Sasaki T, Matsumoto T, Yamamoto K, Sakata K, Baba T, Katayose Y, Wu J, Niimura Y, Cheng Z, Nagamura Y, Antonio BA, Kanamori H, Hosokawa S, Masukawa M, Arikawa K, ... ... Jiang J, et al. The genome sequence and structure of rice chromosome 1. Nature. 420: 312-6. PMID 12447438 DOI: 10.1038/Nature01184 |
0.583 |
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| 2002 |
Zhong CX, Marshall JB, Topp C, Mroczek R, Kato A, Nagaki K, Birchler JA, Jiang J, Dawe RK. Centromeric retroelements and satellites interact with maize kinetochore protein CENH3. The Plant Cell. 14: 2825-36. PMID 12417704 DOI: 10.1105/Tpc.006106 |
0.305 |
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| 2002 |
Cheng Z, Buell CR, Wing RA, Jiang J. Resolution of fluorescence in-situ hybridization mapping on rice mitotic prometaphase chromosomes, meiotic pachytene chromosomes and extended DNA fibers Chromosome Research. 10: 379-387. PMID 12296520 DOI: 10.1023/A:1016849618707 |
0.539 |
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| 2002 |
Cheng Z, Dong F, Langdon T, Ouyang S, Buell CR, Gu M, Blattner FR, Jiang J. Functional rice centromeres are marked by a satellite repeat and a centromere-specific retrotransposon. The Plant Cell. 14: 1691-704. PMID 12172016 DOI: 10.1105/Tpc.003079 |
0.51 |
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| 2002 |
Jiang N, Bao Z, Temnykh S, Cheng Z, Jiang J, Wing RA, McCouch SR, Wessler SR. Dasheng: a recently amplified nonautonomous long terminal repeat element that is a major component of pericentromeric regions in rice. Genetics. 161: 1293-305. PMID 12136031 |
0.367 |
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| 2002 |
Zhao Q, Zhang Y, Cheng Z, Chen M, Wang S, Feng Q, Huang Y, Li Y, Tang Y, Zhou B, Chen Z, Yu S, Zhu J, Hu X, Mu J, ... ... Jiang J, et al. A fine physical map of the rice chromosome 4. Genome Research. 12: 817-23. PMID 11997348 DOI: 10.1101/Gr.48902 |
0.545 |
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