Krzysztof Jacek Gorgolewski - Publications

Affiliations: 
Stanford University, Palo Alto, CA 
Area:
neuroinformatics

70 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Poldrack RA, Markiewicz CJ, Appelhoff S, Ashar YK, Auer T, Baillet S, Bansal S, Beltrachini L, Benar CG, Bertazzoli G, Bhogawar S, Blair RW, Bortoletto M, Boudreau M, Brooks TL, ... ... Gorgolewski KJ, et al. The Past, Present, and Future of the Brain Imaging Data Structure (BIDS). Arxiv. PMID 37744469  0.503
2022 Ciric R, Thompson WH, Lorenz R, Goncalves M, MacNicol EE, Markiewicz CJ, Halchenko YO, Ghosh SS, Gorgolewski KJ, Poldrack RA, Esteban O. TemplateFlow: FAIR-sharing of multi-scale, multi-species brain models. Nature Methods. PMID 36456786 DOI: 10.1038/s41592-022-01681-2  0.5
2021 Markiewicz CJ, Gorgolewski KJ, Feingold F, Blair R, Halchenko YO, Miller E, Hardcastle N, Wexler J, Esteban O, Goncavles M, Jwa A, Poldrack R. The OpenNeuro resource for sharing of neuroscience data. Elife. 10. PMID 34658334 DOI: 10.7554/eLife.71774  0.546
2021 Bannier E, Barker G, Borghesani V, Broeckx N, Clement P, Emblem KE, Ghosh S, Glerean E, Gorgolewski KJ, Havu M, Halchenko YO, Herholz P, Hespel A, Heunis S, Hu Y, et al. The Open Brain Consent: Informing research participants and obtaining consent to share brain imaging data. Human Brain Mapping. PMID 33522661 DOI: 10.1002/hbm.25351  0.304
2020 Fox AS, Holley D, Klink PC, Arbuckle SA, Barnes C, Diedrichsen J, Kwok SC, Kyle C, Pruszynski JA, Seidlitz J, Zhou XF, Poldrack RA, Gorgolewski KJ. Sharing Voxelwise Neuroimaging Results from Rhesus Monkeys and Other Species with Neurovault. Neuroimage. 117518. PMID 33137472 DOI: 10.1016/j.neuroimage.2020.117518  0.522
2020 Dadi K, Varoquaux G, Machlouzarides-Shalit A, Gorgolewski KJ, Wassermann D, Thirion B, Mensch A. Fine-grain atlases of functional modes for fMRI analysis. Neuroimage. 221: 117126. PMID 32673748 DOI: 10.1016/J.Neuroimage.2020.117126  0.439
2020 Esteban O, Ciric R, Finc K, Blair RW, Markiewicz CJ, Moodie CA, Kent JD, Goncalves M, DuPre E, Gomez DEP, Ye Z, Salo T, Valabregue R, Amlien IK, Liem F, ... ... Gorgolewski KJ, et al. Analysis of task-based functional MRI data preprocessed with fMRIPrep. Nature Protocols. PMID 32514178 DOI: 10.1038/S41596-020-0327-3  0.637
2020 Botvinik-Nezer R, Holzmeister F, Camerer CF, Dreber A, Huber J, Johannesson M, Kirchler M, Iwanir R, Mumford JA, Adcock RA, Avesani P, Baczkowski BM, Bajracharya A, Bakst L, Ball S, ... ... Gorgolewski KJ, et al. Variability in the analysis of a single neuroimaging dataset by many teams. Nature. PMID 32483374 DOI: 10.1038/S41586-020-2314-9  0.569
2019 Yarkoni T, Markiewicz CJ, de la Vega A, Gorgolewski KJ, Salo T, Halchenko YO, McNamara Q, DeStasio K, Poline JB, Petrov D, Hayot-Sasson V, Nielson DM, Carlin J, Kiar G, Whitaker K, et al. PyBIDS: Python tools for BIDS datasets. Journal of Open Source Software. 4. PMID 32775955 DOI: 10.21105/joss.01294  0.42
2019 Holdgraf C, Appelhoff S, Bickel S, Bouchard K, D'Ambrosio S, David O, Devinsky O, Dichter B, Flinker A, Foster BL, Gorgolewski KJ, Groen I, Groppe D, Gunduz A, Hamilton L, et al. iEEG-BIDS, extending the Brain Imaging Data Structure specification to human intracranial electrophysiology. Scientific Data. 6: 102. PMID 31239438 DOI: 10.1038/S41597-019-0105-7  0.434
2019 Pernet CR, Appelhoff S, Gorgolewski KJ, Flandin G, Phillips C, Delorme A, Oostenveld R. EEG-BIDS, an extension to the brain imaging data structure for electroencephalography. Scientific Data. 6: 103. PMID 31239435 DOI: 10.1038/S41597-019-0104-8  0.427
2019 Esteban O, Blair RW, Nielson DM, Varada JC, Marrett S, Thomas AG, Poldrack RA, Gorgolewski KJ. Crowdsourced MRI quality metrics and expert quality annotations for training of humans and machines. Scientific Data. 6: 30. PMID 30975998 DOI: 10.1038/S41597-019-0035-4  0.535
2019 Mendes N, Oligschläger S, Lauckner ME, Golchert J, Huntenburg JM, Falkiewicz M, Ellamil M, Krause S, Baczkowski BM, Cozatl R, Osoianu A, Kumral D, Pool J, Golz L, Dreyer M, ... ... Gorgolewski KJ, et al. A functional connectome phenotyping dataset including cognitive state and personality measures. Scientific Data. 6: 180307. PMID 30747913 DOI: 10.1038/Sdata.2018.307  0.634
2019 Babayan A, Erbey M, Kumral D, Reinelt JD, Reiter AMF, Röbbig J, Schaare HL, Uhlig M, Anwander A, Bazin PL, Horstmann A, Lampe L, Nikulin VV, Okon-Singer H, Preusser S, ... ... Gorgolewski KJ, et al. A mind-brain-body dataset of MRI, EEG, cognition, emotion, and peripheral physiology in young and old adults. Scientific Data. 6: 180308. PMID 30747911 DOI: 10.1038/Sdata.2018.308  0.641
2019 Gorgolewski KJ, Yarkoni T, Poldrack RA. peaks2maps: reconstructing unthresholded statistical maps from peak coordinates using deep neural networks F1000research. 8. DOI: 10.7490/F1000Research.1116395.1  0.486
2019 Yarkoni T, Markiewicz C, de la Vega A, Gorgolewski K, Salo T, Halchenko Y, McNamara Q, DeStasio K, Poline J, Petrov D, Hayot-Sasson V, Nielson D, Carlin J, Kiar G, Whitaker K, et al. PyBIDS: Python tools for BIDS datasets Journal of Open Source Software. 4: 1294. DOI: 10.21105/joss.01294  0.42
2019 Poldrack RA, Gorgolewski KJ, Varoquaux G. Computational and Informatic Advances for Reproducible Data Analysis in Neuroimaging Annual Review of Biomedical Data Science. 2: 119-138. DOI: 10.1146/ANNUREV-BIODATASCI-072018-021237  0.524
2018 Gorgolewski KJ, Nichols T, Kennedy DN, Poline JB, Poldrack RA. Making replication prestigious. The Behavioral and Brain Sciences. 41: e131. PMID 31064546 DOI: 10.1017/S0140525X18000663  0.516
2018 Esteban O, Markiewicz CJ, Blair RW, Moodie CA, Isik AI, Erramuzpe A, Kent JD, Goncalves M, DuPre E, Snyder M, Oya H, Ghosh SS, Wright J, Durnez J, Poldrack RA, ... Gorgolewski KJ, et al. fMRIPrep: a robust preprocessing pipeline for functional MRI. Nature Methods. PMID 30532080 DOI: 10.1038/S41592-018-0235-4  0.593
2018 Wimmer GE, Li JK, Gorgolewski KJ, Poldrack RA. Reward learning over weeks versus minutes increases the neural representation of value in the human brain. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. PMID 30061189 DOI: 10.1523/Jneurosci.0075-18.2018  0.464
2018 Niso G, Gorgolewski KJ, Bock E, Brooks TL, Flandin G, Gramfort A, Henson RN, Jas M, Litvak V, T Moreau J, Oostenveld R, Schoffelen JM, Tadel F, Wexler J, Baillet S. MEG-BIDS, the brain imaging data structure extended to magnetoencephalography. Scientific Data. 5: 180110. PMID 29917016 DOI: 10.1038/Sdata.2018.110  0.449
2017 Gorgolewski KJ, Durnez J, Poldrack RA. Preprocessed Consortium for Neuropsychiatric Phenomics dataset. F1000research. 6: 1262. PMID 29152222 DOI: 10.12688/F1000Research.11964.2  0.583
2017 Rubin TN, Koyejo O, Gorgolewski KJ, Jones MN, Poldrack RA, Yarkoni T. Decoding brain activity using a large-scale probabilistic functional-anatomical atlas of human cognition. Plos Computational Biology. 13: e1005649. PMID 29059185 DOI: 10.1371/Journal.Pcbi.1005649  0.596
2017 Esteban O, Birman D, Schaer M, Koyejo OO, Poldrack RA, Gorgolewski KJ. MRIQC: Advancing the automatic prediction of image quality in MRI from unseen sites. Plos One. 12: e0184661. PMID 28945803 DOI: 10.1371/Journal.Pone.0184661  0.498
2017 Kiar G, Gorgolewski KJ, Kleissas D, Roncal WG, Litt B, Wandell B, Poldrack RA, Wiener M, Vogelstein RJ, Burns R, Vogelstein JT. Science In the Cloud (SIC): A use case in MRI Connectomics. Gigascience. PMID 28327935 DOI: 10.1093/Gigascience/Gix013  0.35
2017 Gorgolewski KJ, Alfaro-Almagro F, Auer T, Bellec P, Capotă M, Chakravarty MM, Churchill NW, Cohen AL, Craddock RC, Devenyi GA, Eklund A, Esteban O, Flandin G, Ghosh SS, Guntupalli JS, et al. BIDS apps: Improving ease of use, accessibility, and reproducibility of neuroimaging data analysis methods. Plos Computational Biology. 13: e1005209. PMID 28278228 DOI: 10.1371/Journal.Pcbi.1005209  0.558
2017 Acikalin MY, Gorgolewski KJ, Poldrack RA. A Coordinate-Based Meta-Analysis of Overlaps in Regional Specialization and Functional Connectivity across Subjective Value and Default Mode Networks. Frontiers in Neuroscience. 11: 1. PMID 28154520 DOI: 10.3389/Fnins.2017.00001  0.577
2017 Poldrack RA, Baker CI, Durnez J, Gorgolewski KJ, Matthews PM, Munafò MR, Nichols TE, Poline JB, Vul E, Yarkoni T. Scanning the horizon: towards transparent and reproducible neuroimaging research. Nature Reviews. Neuroscience. PMID 28053326 DOI: 10.1038/Nrn.2016.167  0.536
2017 Gorgolewski KJ, Tambini A, Durnez J, Sochat VV, Wexler J, Poldrack RA. Evaluation of full brain parcellation schemes using the NeuroVault database of statistical maps F1000research. 6. DOI: 10.7490/F1000Research.1115065.1  0.53
2017 Esteban O, Gorgolewski K, Blair R, Berleant S, Moodie C, Poldrack R. FMRIprep: a robust preprocessing pipeline for task-based and resting-state fMRI data F1000research. 6. DOI: 10.7490/F1000Research.1114420.1  0.546
2017 Esteban O, Gorgolewski K, Poldrack R. MRIQC: automatic prediction of quality and visual reporting of MRI scans F1000research. 6. DOI: 10.7490/F1000Research.1114419.1  0.479
2017 Gorgolewski KJ, Esteban O, Schaefer G, Wandell BA, Poldrack RA. OpenNeuro – a free online platform for sharing and analysis of neuroimaging data F1000research. 6. DOI: 10.7490/F1000Research.1114354.1  0.521
2017 Poldrack RA, Gorgolewski KJ. 2.1 Making Neuroimaging More Reproducible and Transparent Journal of the American Academy of Child & Adolescent Psychiatry. 56: S136. DOI: 10.1016/J.Jaac.2017.07.514  0.486
2016 Poldrack RA, Congdon E, Triplett W, Gorgolewski KJ, Karlsgodt KH, Mumford JA, Sabb FW, Freimer NB, London ED, Cannon TD, Bilder RM. A phenome-wide examination of neural and cognitive function. Scientific Data. 3: 160110. PMID 27922632 DOI: 10.1038/Sdata.2016.110  0.58
2016 Maumet C, Auer T, Bowring A, Chen G, Das S, Flandin G, Ghosh S, Glatard T, Gorgolewski KJ, Helmer KG, Jenkinson M, Keator DB, Nichols BN, Poline JB, Reynolds R, et al. Sharing brain mapping statistical results with the neuroimaging data model. Scientific Data. 3: 160102. PMID 27922621 DOI: 10.1038/Sdata.2016.102  0.426
2016 Shine JM, Bissett PG, Bell PT, Koyejo O, Balsters JH, Gorgolewski KJ, Moodie CA, Poldrack RA. The Dynamics of Functional Brain Networks: Integrated Network States during Cognitive Task Performance. Neuron. PMID 27693256 DOI: 10.1016/J.Neuron.2016.09.018  0.599
2016 Gorgolewski KJ, Poldrack RA. A Practical Guide for Improving Transparency and Reproducibility in Neuroimaging Research. Plos Biology. 14: e1002506. PMID 27389358 DOI: 10.1371/Journal.Pbio.1002506  0.485
2016 Gorgolewski KJ, Auer T, Calhoun VD, Craddock RC, Das S, Duff EP, Flandin G, Ghosh SS, Glatard T, Halchenko YO, Handwerker DA, Hanke M, Keator D, Li X, Michael Z, et al. The brain imaging data structure, a format for organizing and describing outputs of neuroimaging experiments. Scientific Data. 3: 160044. PMID 27326542 DOI: 10.1038/Sdata.2016.44  0.599
2016 Pernet CR, Gorgolewski KJ, Job D, Rodriguez D, Whittle I, Wardlaw J. A structural and functional magnetic resonance imaging dataset of brain tumour patients. Scientific Data. 3: 160003. PMID 26836205 DOI: 10.1038/Sdata.2016.3  0.438
2016 Pernet CR, Gorgolewski KJ, Job D, Rodriguez D, Storkey A, Whittle I, Wardlaw J. Evaluation of a pre-surgical functional MRI workflow: From data acquisition to reporting. International Journal of Medical Informatics. 86: 37-42. PMID 26725693 DOI: 10.1016/J.Ijmedinf.2015.11.014  0.383
2016 Clark D, Gorgolewski KJ, Craddock RC. Integrating the Brain Imaging Data Structure (BIDS) standard into C-PAC Gigascience. 5. DOI: 10.1186/S13742-016-0147-0-C  0.375
2016 Craddock RC, Bellec P, Margules DS, Nichols BN, Pfannmöller JP, Badhwar A, Kennedy D, Poline J, Toro R, Cipollini B, Rokem A, Clark D, Gorgolewski KJ, Craddock RC, Craddock RC, ... ... Gorgolewski KJ, et al. 2015 Brainhack Proceedings Gigascience. 5: 1-26. DOI: 10.1186/S13742-016-0147-0  0.715
2015 Poldrack RA, Laumann TO, Koyejo O, Gregory B, Hover A, Chen MY, Gorgolewski KJ, Luci J, Joo SJ, Boyd RL, Hunicke-Smith S, Simpson ZB, Caven T, Sochat V, Shine JM, et al. Long-term neural and physiological phenotyping of a single human. Nature Communications. 6: 8885. PMID 26648521 DOI: 10.1038/Ncomms9885  0.588
2015 Sochat VV, Gorgolewski KJ, Koyejo O, Durnez J, Poldrack RA. Effects of thresholding on correlation-based image similarity metrics. Frontiers in Neuroscience. 9: 418. PMID 26578875 DOI: 10.3389/Fnins.2015.00418  0.539
2015 Shine JM, Oluwasanmi K, Bell PT, Gorgolewski KJ, Gilat M, Poldrack RA. Estimation of dynamic functional connectivity using Multiplicative Analytical Coupling. Neuroimage. PMID 26231247 DOI: 10.1016/J.Neuroimage.2015.07.064  0.54
2015 Pernet CR, McAleer P, Latinus M, Gorgolewski KJ, Charest I, Bestelmeyer PE, Watson RH, Fleming D, Crabbe F, Valdes-Sosa M, Belin P. The human voice areas: Spatial organization and inter-individual variability in temporal and extra-temporal cortices. Neuroimage. 119: 164-174. PMID 26116964 DOI: 10.1016/J.Neuroimage.2015.06.050  0.309
2015 Poldrack RA, Gorgolewski KJ. OpenfMRI: Open sharing of task fMRI data. Neuroimage. PMID 26048618 DOI: 10.1016/J.Neuroimage.2015.05.073  0.533
2015 Gorgolewski KJ, Mendes N, Wilfling D, Wladimirow E, Gauthier CJ, Bonnen T, Ruby FJ, Trampel R, Bazin PL, Cozatl R, Smallwood J, Margulies DS. A high resolution 7-Tesla resting-state fMRI test-retest dataset with cognitive and physiological measures. Scientific Data. 2: 140054. PMID 25977805 DOI: 10.1038/Sdata.2014.54  0.627
2015 Gorgolewski KJ, Varoquaux G, Rivera G, Schwarz Y, Ghosh SS, Maumet C, Sochat VV, Nichols TE, Poldrack RA, Poline JB, Yarkoni T, Margulies DS. NeuroVault.org: a web-based repository for collecting and sharing unthresholded statistical maps of the human brain. Frontiers in Neuroinformatics. 9: 8. PMID 25914639 DOI: 10.3389/Fninf.2015.00008  0.686
2015 Gorgolewski KJ, Varoquaux G, Rivera G, Schwartz Y, Sochat VV, Ghosh SS, Maumet C, Nichols TE, Poline JB, Yarkoni T, Margulies DS, Poldrack RA. NeuroVault.org: A repository for sharing unthresholded statistical maps, parcellations, and atlases of the human brain. Neuroimage. PMID 25869863 DOI: 10.1016/J.Neuroimage.2015.04.016  0.69
2014 Zuo XN, Anderson JS, Bellec P, Birn RM, Biswal BB, Blautzik J, Breitner JC, Buckner RL, Calhoun VD, Castellanos FX, Chen A, Chen B, Chen J, Chen X, Colcombe SJ, ... ... Gorgolewski KJ, et al. An open science resource for establishing reliability and reproducibility in functional connectomics. Scientific Data. 1: 140049. PMID 25977800 DOI: 10.1038/Sdata.2014.49  0.669
2014 Poldrack RA, Gorgolewski KJ. Making big data open: data sharing in neuroimaging. Nature Neuroscience. 17: 1510-7. PMID 25349916 DOI: 10.1038/Nn.3818  0.592
2014 Schaefer A, Margulies DS, Lohmann G, Gorgolewski KJ, Smallwood J, Kiebel SJ, Villringer A. Dynamic network participation of functional connectivity hubs assessed by resting-state fMRI. Frontiers in Human Neuroscience. 8: 195. PMID 24860458 DOI: 10.3389/Fnhum.2014.00195  0.631
2014 Gorgolewski KJ, Lurie D, Urchs S, Kipping JA, Craddock RC, Milham MP, Margulies DS, Smallwood J. A correspondence between individual differences in the brain's intrinsic functional architecture and the content and form of self-generated thoughts. Plos One. 9: e97176. PMID 24824880 DOI: 10.1371/Journal.Pone.0097176  0.602
2014 Buchanan CR, Pernet CR, Gorgolewski KJ, Storkey AJ, Bastin ME. Test-retest reliability of structural brain networks from diffusion MRI. Neuroimage. 86: 231-43. PMID 24096127 DOI: 10.1016/J.Neuroimage.2013.09.054  0.318
2014 Gorgolewski KJ, Fox AS, Chang L, Schäfer A, Arélin K, Burmann I, Sacher J, Margulies DS. Tight fitting genes: finding relations between statistical maps and gene expression patterns F1000research. 5. DOI: 10.7490/F1000Research.1097120.1  0.504
2014 Gorgolewski K, Yarkoni T, Ghosh S, Poldrack R, Poline J, Schwarz Y, Nichols T, Maumet C, Margulies D. NeuroVault: a web repository for sharing statistical parametric maps F1000research. 5. DOI: 10.7490/F1000Research.1096374.1  0.625
2014 Moreno-Dominguez D, Watanabe A, Gorgolewski KJ, Schäfer A, Goulas A, Kipping J, Kanaan AS, Anwander A, Toro R, Margulies DS. Multi-modal parcellation of the frontal lobe F1000research. 5. DOI: 10.7490/F1000Research.1096130.1  0.561
2014 Ruby FJ, Gorgolewski KJ, Jefferies E, Margulies D, Smallwood J. Relation between semantic and episodic networks in self-generated thought F1000research. 5. DOI: 10.7490/F1000Research.1096075.1  0.502
2014 Huntenburg JM, Gorgolewski KJ, Anwander A, Margulies DS. Evaluating nonlinear coregistration of BOLD EPI and T1 images F1000research. 5. DOI: 10.7490/F1000Research.1096036.1  0.553
2013 Smallwood J, Gorgolewski KJ, Golchert J, Ruby FJ, Engen H, Baird B, Vinski MT, Schooler JW, Margulies DS. The default modes of reading: modulation of posterior cingulate and medial prefrontal cortex connectivity associated with comprehension and task focus while reading. Frontiers in Human Neuroscience. 7: 734. PMID 24282397 DOI: 10.3389/Fnhum.2013.00734  0.59
2013 Baird B, Smallwood J, Gorgolewski KJ, Margulies DS. Medial and lateral networks in anterior prefrontal cortex support metacognitive ability for memory and perception. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 33: 16657-65. PMID 24133268 DOI: 10.1523/Jneurosci.0786-13.2013  0.54
2013 Margulies DS, Böttger J, Watanabe A, Gorgolewski KJ. Visualizing the human connectome. Neuroimage. 80: 445-61. PMID 23660027 DOI: 10.1016/J.Neuroimage.2013.04.111  0.551
2013 Gorgolewski KJ, Storkey A, Bastin ME, Whittle IR, Wardlaw JM, Pernet CR. A test-retest fMRI dataset for motor, language and spatial attention functions. Gigascience. 2: 6. PMID 23628139 DOI: 10.1186/2047-217X-2-6  0.379
2013 Gorgolewski KJ, Margulies DS, Milham MP. Making data sharing count: a publication-based solution. Frontiers in Neuroscience. 7: 9. PMID 23390412 DOI: 10.3389/Fnins.2013.00009  0.558
2013 Gorgolewski KJ, Storkey AJ, Bastin ME, Whittle I, Pernet C. Single subject fMRI test-retest reliability metrics and confounding factors. Neuroimage. 69: 231-43. PMID 23153967 DOI: 10.1016/J.Neuroimage.2012.10.085  0.313
2013 Gorgolewski KJ, Bazin PL, Engen H, Margulies DS. Fifty shades of gray, matter: Using bayesian priors to improve the power of whole-brain voxel- and connexelwise inferences Proceedings - 2013 3rd International Workshop On Pattern Recognition in Neuroimaging, Prni 2013. 194-197. DOI: 10.1109/PRNI.2013.57  0.505
2012 Gorgolewski KJ, Storkey AJ, Bastin ME, Pernet CR. Adaptive thresholding for reliable topological inference in single subject fMRI analysis. Frontiers in Human Neuroscience. 6: 245. PMID 22936908 DOI: 10.3389/Fnhum.2012.00245  0.328
2012 Poline JB, Breeze JL, Ghosh S, Gorgolewski K, Halchenko YO, Hanke M, Haselgrove C, Helmer KG, Keator DB, Marcus DS, Poldrack RA, Schwartz Y, Ashburner J, Kennedy DN. Data sharing in neuroimaging research. Frontiers in Neuroinformatics. 6: 9. PMID 22493576 DOI: 10.3389/Fninf.2012.00009  0.587
2011 Gorgolewski K, Burns CD, Madison C, Clark D, Halchenko YO, Waskom ML, Ghosh SS. Nipype: a flexible, lightweight and extensible neuroimaging data processing framework in python. Frontiers in Neuroinformatics. 5: 13. PMID 21897815 DOI: 10.3389/Fninf.2011.00013  0.334
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