| Year |
Citation |
Score |
| 2023 |
Hepkema J, Lee NK, Stewart BJ, Ruangroengkulrith S, Charoensawan V, Clatworthy MR, Hemberg M. Predicting the impact of sequence motifs on gene regulation using single-cell data. Genome Biology. 24: 189. PMID 37582793 DOI: 10.1186/s13059-023-03021-9 |
0.37 |
|
| 2022 |
Salmen F, De Jonghe J, Kaminski TS, Alemany A, Parada GE, Verity-Legg J, Yanagida A, Kohler TN, Battich N, van den Brekel F, Ellermann AL, Arias AM, Nichols J, Hemberg M, Hollfelder F, et al. High-throughput total RNA sequencing in single cells using VASA-seq. Nature Biotechnology. PMID 35760914 DOI: 10.1038/s41587-022-01361-8 |
0.339 |
|
| 2020 |
Heaton H, Talman AM, Knights A, Imaz M, Gaffney DJ, Durbin R, Hemberg M, Lawniczak MKN. Souporcell: robust clustering of single-cell RNA-seq data by genotype without reference genotypes. Nature Methods. PMID 32366989 DOI: 10.1038/S41592-020-0820-1 |
0.384 |
|
| 2020 |
Georgakopoulos-Soares I, Koh G, Momen SE, Jiricny J, Hemberg M, Nik-Zainal S. Transcription-coupled repair and mismatch repair contribute towards preserving genome integrity at mononucleotide repeat tracts. Nature Communications. 11: 1980. PMID 32332764 DOI: 10.1038/S41467-020-15901-W |
0.367 |
|
| 2020 |
Westoby J, Artemov P, Hemberg M, Ferguson-Smith A. Obstacles to detecting isoforms using full-length scRNA-seq data. Genome Biology. 21: 74. PMID 32293520 DOI: 10.1186/S13059-020-01981-W |
0.413 |
|
| 2020 |
Bayraktar OA, Bartels T, Holmqvist S, Kleshchevnikov V, Martirosyan A, Polioudakis D, Ben Haim L, Young AMH, Batiuk MY, Prakash K, Brown A, Roberts K, Paredes MF, Kawaguchi R, Stockley JH, ... ... Hemberg M, et al. Astrocyte layers in the mammalian cerebral cortex revealed by a single-cell in situ transcriptomic map. Nature Neuroscience. PMID 32203496 DOI: 10.1038/S41593-020-0602-1 |
0.312 |
|
| 2020 |
Wang R, Sharma R, Shen X, Laughney AM, Funato K, Clark PJ, Shpokayte M, Morgenstern P, Navare M, Xu Y, Harbi S, Masilionis I, Nanjangud G, Yang Y, Duran-Rehbein G, ... Hemberg M, et al. Adult Human Glioblastomas Harbor Radial Glia-like Cells. Stem Cell Reports. PMID 32004492 DOI: 10.1016/J.Stemcr.2020.01.007 |
0.348 |
|
| 2019 |
Kiselev VY, Andrews TS, Hemberg M. Challenges in unsupervised clustering of single-cell RNA-seq data. Nature Reviews. Genetics. PMID 30617341 DOI: 10.1038/S41576-018-0088-9 |
0.369 |
|
| 2018 |
Andrews TS, Hemberg M. False signals induced by single-cell imputation. F1000research. 7: 1740. PMID 30906525 DOI: 10.12688/F1000Research.16613.2 |
0.409 |
|
| 2018 |
Andrews TS, Hemberg M. M3Drop: Dropout-based feature selection for scRNASeq. Bioinformatics (Oxford, England). PMID 30590489 DOI: 10.1093/Bioinformatics/Bty1044 |
0.347 |
|
| 2018 |
Westoby J, Herrera MS, Ferguson-Smith AC, Hemberg M. Simulation-based benchmarking of isoform quantification in single-cell RNA-seq. Genome Biology. 19: 191. PMID 30404663 DOI: 10.1186/S13059-018-1571-5 |
0.422 |
|
| 2018 |
Hemberg M. Single-cell genomics. Briefings in Functional Genomics. 17: 207-208. PMID 30060035 DOI: 10.1093/Bfgp/Ely025 |
0.33 |
|
| 2018 |
Kiselev VY, Yiu A, Hemberg M. scmap: projection of single-cell RNA-seq data across data sets. Nature Methods. PMID 29608555 DOI: 10.1038/Nmeth.4644 |
0.38 |
|
| 2018 |
Bergiers I, Andrews T, Vargel Bölükbaşı Ö, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Itır Perçin G, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis. Elife. 7. PMID 29555020 DOI: 10.7554/Elife.29312 |
0.436 |
|
| 2018 |
Amaral PP, Leonardi T, Han N, Viré E, Gascoigne DK, Arias-Carrasco R, Büscher M, Pandolfini L, Zhang A, Pluchino S, Maracaja-Coutinho V, Nakaya HI, Hemberg M, Shiekhattar R, Enright AJ, et al. Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci. Genome Biology. 19: 32. PMID 29540241 DOI: 10.1186/S13059-018-1405-5 |
0.404 |
|
| 2017 |
Mathys H, Adaikkan C, Gao F, Young JZ, Manet E, Hemberg M, De Jager PL, Ransohoff RM, Regev A, Tsai LH. Temporal Tracking of Microglia Activation in Neurodegeneration at Single-Cell Resolution. Cell Reports. 21: 366-380. PMID 29020624 DOI: 10.1016/J.Celrep.2017.09.039 |
0.36 |
|
| 2017 |
Akay A, Di Domenico T, Suen KM, Nabih A, Parada GE, Larance M, Medhi R, Berkyurek AC, Zhang X, Wedeles CJ, Rudolph KLM, Engelhardt J, Hemberg M, Ma P, Lamond AI, et al. The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription. Developmental Cell. 42: 241-255.e6. PMID 28787591 DOI: 10.1016/J.Devcel.2017.07.002 |
0.444 |
|
| 2017 |
Andrews TS, Hemberg M. Identifying cell populations with scRNASeq. Molecular Aspects of Medicine. PMID 28712804 DOI: 10.1016/J.Mam.2017.07.002 |
0.363 |
|
| 2017 |
Kiselev VY, Kirschner K, Schaub MT, Andrews T, Yiu A, Chandra T, Natarajan KN, Reik W, Barahona M, Green AR, Hemberg M. SC3: consensus clustering of single-cell RNA-seq data. Nature Methods. PMID 28346451 DOI: 10.1038/Nmeth.4236 |
0.359 |
|
| 2017 |
Bergiers I, Andrews T, Bölükbaşı ÖV, Buness A, Janosz E, Lopez-Anguita N, Ganter K, Kosim K, Celen C, Perçin GI, Collier P, Baying B, Benes V, Hemberg M, Lancrin C. Author response: Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis Elife. DOI: 10.7554/Elife.29312.055 |
0.361 |
|
| 2016 |
Sørensen AT, Cooper YA, Baratta MV, Weng FJ, Zhang Y, Ramamoorthi K, Fropf R, LaVerriere E, Xue J, Young A, Schneider C, Gøtzsche CR, Hemberg M, Yin JC, Maier SF, et al. A robust activity marking system for exploring active neuronal ensembles. Elife. 5. PMID 27661450 DOI: 10.7554/Elife.13918 |
0.341 |
|
| 2016 |
Yang Y, Yamada T, Hill KK, Hemberg M, Reddy NC, Cho HY, Guthrie AN, Oldenborg A, Heiney SA, Ohmae S, Medina JF, Holy TE, Bonni A. Chromatin remodeling inactivates activity genes and regulates neural coding. Science (New York, N.Y.). 353: 300-5. PMID 27418512 DOI: 10.1126/Science.Aad4225 |
0.42 |
|
| 2016 |
Nguyen TA, Jones RD, Snavely A, Pfenning A, Kirchner R, Hemberg M, Gray JM. High-throughput functional comparison of promoter and enhancer activities. Genome Research. PMID 27311442 DOI: 10.1101/Gr.204834.116 |
0.403 |
|
| 2016 |
Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J. f-divergence cutoff index to simultaneously identify differential expression in the integrated transcriptome and proteome. Nucleic Acids Research. PMID 26980280 DOI: 10.1093/Nar/Gkw157 |
0.59 |
|
| 2016 |
Delmans M, Hemberg M. Discrete distributional differential expression (D(3)E) - a tool for gene expression analysis of single-cell RNA-seq data. Bmc Bioinformatics. 17: 110. PMID 26927822 DOI: 10.1186/S12859-016-0944-6 |
0.433 |
|
| 2015 |
Andzelm MM, Cherry TJ, Harmin DA, Boeke AC, Lee C, Hemberg M, Pawlyk B, Malik AN, Flavell SW, Sandberg MA, Raviola E, Greenberg ME. MEF2D drives photoreceptor development through a genome-wide competition for tissue-specific enhancers. Neuron. 86: 247-63. PMID 25801704 DOI: 10.1016/J.Neuron.2015.02.038 |
0.393 |
|
| 2015 |
Gabel HW, Kinde B, Stroud H, Gilbert CS, Harmin DA, Kastan NR, Hemberg M, Ebert DH, Greenberg ME. Disruption of DNA-methylation-dependent long gene repression in Rett syndrome. Nature. 522: 89-93. PMID 25762136 DOI: 10.1038/Nature14319 |
0.396 |
|
| 2015 |
Kim TK, Hemberg M, Gray JM. Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Cold Spring Harbor Perspectives in Biology. 7: a018622. PMID 25561718 DOI: 10.1101/Cshperspect.A018622 |
0.407 |
|
| 2015 |
Kiselev V, Schaub M, Andrews TS, Barahona M, Hemberg M. SC 3 - consensus clustering of single-cell RNA-Seq data F1000research. 4. DOI: 10.7490/F1000Research.1110908.1 |
0.364 |
|
| 2014 |
Prabakaran S, Hemberg M, Chauhan R, Winter D, Tweedie-Cullen RY, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA. Quantitative profiling of peptides from RNAs classified as noncoding. Nature Communications. 5: 5429. PMID 25403355 DOI: 10.1038/Ncomms6429 |
0.618 |
|
| 2014 |
Malik AN, Vierbuchen T, Hemberg M, Rubin AA, Ling E, Couch CH, Stroud H, Spiegel I, Farh KK, Harmin DA, Greenberg ME. Genome-wide identification and characterization of functional neuronal activity-dependent enhancers. Nature Neuroscience. 17: 1330-9. PMID 25195102 DOI: 10.1038/Nn.3808 |
0.429 |
|
| 2014 |
Yamada T, Yang Y, Hemberg M, Yoshida T, Cho HY, Murphy JP, Fioravante D, Regehr WG, Gygi SP, Georgopoulos K, Bonni A. Promoter decommissioning by the NuRD chromatin remodeling complex triggers synaptic connectivity in the mammalian brain. Neuron. 83: 122-34. PMID 24991957 DOI: 10.1016/J.Neuron.2014.05.039 |
0.395 |
|
| 2012 |
Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G. Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research. 40: 7858-69. PMID 22684627 DOI: 10.1093/nar/gks477 |
0.6 |
|
| 2012 |
Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK, Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME. Bhlhb5 and Prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron. 73: 292-303. PMID 22284184 DOI: 10.1016/J.Neuron.2011.09.035 |
0.374 |
|
| 2011 |
Cohen S, Gabel HW, Hemberg M, Hutchinson AN, Sadacca LA, Ebert DH, Harmin DA, Greenberg RS, Verdine VK, Zhou Z, Wetsel WC, West AE, Greenberg ME. Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function. Neuron. 72: 72-85. PMID 21982370 DOI: 10.1016/J.Neuron.2011.08.022 |
0.358 |
|
| 2011 |
Hemberg M, Kreiman G. Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Research. 39: 7092-102. PMID 21622661 DOI: 10.1093/Nar/Gkr404 |
0.608 |
|
| 2010 |
Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. Plos One. 5: e10870. PMID 20523734 DOI: 10.1371/Journal.Pone.0010870 |
0.425 |
|
| 2010 |
Kim TK, Hemberg M, Gray JM, Costa AM, Bear DM, Wu J, Harmin DA, Laptewicz M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, et al. Widespread transcription at neuronal activity-regulated enhancers. Nature. 465: 182-7. PMID 20393465 DOI: 10.1038/Nature09033 |
0.625 |
|
| 2009 |
Ståhlberg A, Bengtsson M, Hemberg M, Semb H. Quantitative transcription factor analysis of undifferentiated single human embryonic stem cells. Clinical Chemistry. 55: 2162-70. PMID 19815608 DOI: 10.1373/Clinchem.2009.131433 |
0.416 |
|
| 2008 |
Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME. Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron. 60: 1022-38. PMID 19109909 DOI: 10.1016/J.Neuron.2008.11.029 |
0.391 |
|
| 2008 |
Bengtsson M, Hemberg M, Rorsman P, Ståhlberg A. Quantification of mRNA in single cells and modelling of RT-qPCR induced noise. Bmc Molecular Biology. 9: 63. PMID 18631407 DOI: 10.1186/1471-2199-9-63 |
0.382 |
|
| 2008 |
Chang HH, Hemberg M, Barahona M, Ingber DE, Huang S. Transcriptome-wide noise controls lineage choice in mammalian progenitor cells. Nature. 453: 544-7. PMID 18497826 DOI: 10.1038/Nature06965 |
0.371 |
|
| Low-probability matches (unlikely to be authored by this person) |
| 2022 |
Georgakopoulos-Soares I, Chan CSY, Ahituv N, Hemberg M. Author Correction: High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation. Genome Biology. 23: 164. PMID 35897074 DOI: 10.1186/s13059-022-02733-8 |
0.299 |
|
| 2022 |
Georgakopoulos-Soares I, Chan CSY, Ahituv N, Hemberg M. High-throughput techniques enable advances in the roles of DNA and RNA secondary structures in transcriptional and post-transcriptional gene regulation. Genome Biology. 23: 159. PMID 35851062 DOI: 10.1186/s13059-022-02727-6 |
0.298 |
|
| 2019 |
Kiselev VY, Andrews TS, Hemberg M. Publisher Correction: Challenges in unsupervised clustering of single-cell RNA-seq data. Nature Reviews. Genetics. PMID 30670832 DOI: 10.1038/S41576-019-0095-5 |
0.294 |
|
| 2017 |
Kirschner K, Chandra T, Kiselev V, Flores-Santa Cruz D, Macaulay IC, Park HJ, Li J, Kent DG, Kumar R, Pask DC, Hamilton TL, Hemberg M, Reik W, Green AR. Proliferation Drives Aging-Related Functional Decline in a Subpopulation of the Hematopoietic Stem Cell Compartment. Cell Reports. 19: 1503-1511. PMID 28538171 DOI: 10.1016/J.Celrep.2017.04.074 |
0.294 |
|
| 2017 |
Hemberg M. Summing up the parts of the hypothalamus. Nature Neuroscience. 20: 378-379. PMID 28230849 DOI: 10.1038/Nn.4515 |
0.292 |
|
| 2022 |
Cha J, Yu J, Cho JW, Hemberg M, Lee I. scHumanNet: a single-cell network analysis platform for the study of cell-type specificity of disease genes. Nucleic Acids Research. PMID 36350625 DOI: 10.1093/nar/gkac1042 |
0.288 |
|
| 2023 |
Gordon WE, Baek S, Nguyen HP, Kuo YM, Bradley R, Galazyuk A, Lee I, Ingala MR, Simmons NB, Schountz T, Cooper LN, Georgakopoulos-Soares I, Hemberg M, Ahituv N. Integrative single-cell characterization of frugivory adaptations in the bat kidney and pancreas. Biorxiv : the Preprint Server For Biology. PMID 36824791 DOI: 10.1101/2023.02.12.528204 |
0.281 |
|
| 2014 |
Frost B, Hemberg M, Lewis J, Feany MB. Tau promotes neurodegeneration through global chromatin relaxation. Nature Neuroscience. 17: 357-66. PMID 24464041 DOI: 10.1038/Nn.3639 |
0.279 |
|
| 2021 |
Urbonaite G, Lee JTH, Liu P, Parada GE, Hemberg M, Acar M. A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels. Communications Biology. 4: 822. PMID 34193958 DOI: 10.1038/s42003-021-02320-w |
0.275 |
|
| 2021 |
Urbonaite G, Lee JTH, Liu P, Parada GE, Hemberg M, Acar M. A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels. Communications Biology. 4: 822. PMID 34193958 DOI: 10.1038/s42003-021-02320-w |
0.275 |
|
| 2019 |
Lee JTH, Hemberg M. Supervised clustering for single-cell analysis. Nature Methods. PMID 31501544 DOI: 10.1038/S41592-019-0534-4 |
0.275 |
|
| 2022 |
Parada GE, Hemberg M. Identification and Quantification of Microexons Using Bulk and Single-Cell RNA-Seq Data. Methods in Molecular Biology (Clifton, N.J.). 2537: 129-147. PMID 35895262 DOI: 10.1007/978-1-0716-2521-7_8 |
0.275 |
|
| 2016 |
Sørensen AT, Cooper YA, Baratta MV, Weng F, Zhang Y, Ramamoorthi K, Fropf R, LaVerriere E, Xue J, Young A, Schneider C, Gøtzsche CR, Hemberg M, Yin JC, Maier SF, et al. Author response: A robust activity marking system for exploring active neuronal ensembles Elife. DOI: 10.7554/Elife.13918.028 |
0.273 |
|
| 2024 |
Gordon WE, Baek S, Nguyen HP, Kuo YM, Bradley R, Fong SL, Kim N, Galazyuk A, Lee I, Ingala MR, Simmons NB, Schountz T, Cooper LN, Georgakopoulos-Soares I, Hemberg M, et al. Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature Communications. 15: 12. PMID 38195585 DOI: 10.1038/s41467-023-44186-y |
0.273 |
|
| 2018 |
Georgakopoulos-Soares I, Morganella S, Jain N, Hemberg M, Nik-Zainal S. Noncanonical secondary structures arising from non-B DNA motifs are determinants of mutagenesis. Genome Research. PMID 30104284 DOI: 10.1101/Gr.231688.117 |
0.272 |
|
| 2007 |
Hemberg M, Barahona M. Perfect sampling of the master equation for gene regulatory networks. Biophysical Journal. 93: 401-10. PMID 17468171 DOI: 10.1529/Biophysj.106.099390 |
0.271 |
|
| 2019 |
Howick VM, Russell AJC, Andrews T, Heaton H, Reid AJ, Natarajan K, Butungi H, Metcalf T, Verzier LH, Rayner JC, Berriman M, Herren JK, Billker O, Hemberg M, Talman AM, et al. The Malaria Cell Atlas: Single parasite transcriptomes across the complete life cycle. Science (New York, N.Y.). 365. PMID 31439762 DOI: 10.1126/Science.Aaw2619 |
0.264 |
|
| 2022 |
Bergmann T, Liu Y, Skov J, Mogus L, Lee J, Pfisterer U, Handfield LF, Asenjo-Martinez A, Lisa-Vargas I, Seemann SE, Lee JTH, Patikas N, Kornum BR, Denham M, Hyttel P, ... ... Hemberg M, et al. Production of human entorhinal stellate cell-like cells by forward programming shows an important role of Foxp1 in reprogramming. Frontiers in Cell and Developmental Biology. 10: 976549. PMID 36046338 DOI: 10.3389/fcell.2022.976549 |
0.262 |
|
| 2016 |
Georgakopoulos-Soares I, Jain N, Gray JM, Hemberg M. MPRAnator: a web-based tool for the design of Massively Parallel Reporter Assay experiments. Bioinformatics (Oxford, England). PMID 27605100 DOI: 10.1093/Bioinformatics/Btw584 |
0.26 |
|
| 2021 |
Lee JTH, Patikas N, Kiselev VY, Hemberg M. Fast searches of large collections of single-cell data using scfind. Nature Methods. PMID 33649586 DOI: 10.1038/s41592-021-01076-9 |
0.259 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Hemberg M, et al. Author response: The Human Cell Atlas Elife. DOI: 10.7554/Elife.27041.011 |
0.257 |
|
| 2021 |
Chazarra-Gil R, van Dongen S, Kiselev VY, Hemberg M. Flexible comparison of batch correction methods for single-cell RNA-seq using BatchBench. Nucleic Acids Research. PMID 33524142 DOI: 10.1093/nar/gkab004 |
0.246 |
|
| 2021 |
Parada GE, Munita R, Georgakopoulos-Soares I, Fernandes HJR, Kedlian VR, Metzakopian E, Andres ME, Miska EA, Hemberg M. MicroExonator enables systematic discovery and quantification of microexons across mouse embryonic development. Genome Biology. 22: 43. PMID 33482885 DOI: 10.1186/s13059-020-02246-2 |
0.244 |
|
| 2020 |
Andrews TS, Kiselev VY, McCarthy D, Hemberg M. Tutorial: guidelines for the computational analysis of single-cell RNA sequencing data. Nature Protocols. PMID 33288955 DOI: 10.1038/s41596-020-00409-w |
0.243 |
|
| 2006 |
Hemberg M, Yaliraki SN, Barahona M. Stochastic kinetics of viral capsid assembly based on detailed protein structures. Biophysical Journal. 90: 3029-42. PMID 16473916 DOI: 10.1529/Biophysj.105.076737 |
0.24 |
|
| 2008 |
Hemberg M, Barahona M. A dominated coupling from the past algorithm for the stochastic simulation of networks of biochemical reactions. Bmc Systems Biology. 2: 42. PMID 18466612 DOI: 10.1186/1752-0509-2-42 |
0.237 |
|
| 2022 |
Georgakopoulos-Soares I, Parada GE, Wong HY, Medhi R, Furlan G, Munita R, Miska EA, Kwok CK, Hemberg M. Alternative splicing modulation by G-quadruplexes. Nature Communications. 13: 2404. PMID 35504902 DOI: 10.1038/s41467-022-30071-7 |
0.234 |
|
| 2021 |
Georgakopoulos-Soares I, Yizhar-Barnea O, Mouratidis I, Hemberg M, Ahituv N. Absent from DNA and protein: genomic characterization of nullomers and nullpeptides across functional categories and evolution. Genome Biology. 22: 245. PMID 34433494 DOI: 10.1186/s13059-021-02459-z |
0.223 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Hemberg M, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041 |
0.219 |
|
| 2017 |
Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell PJ, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, ... ... Hemberg M, et al. Science Forum: The Human Cell Atlas. Elife. 6. PMID 29206104 DOI: 10.7554/Elife.27041 |
0.219 |
|
| 2024 |
Parada GE, Hemberg M. Bridge over troubled transcripts. Nature Computational Science. 2: 142-143. PMID 38177442 DOI: 10.1038/s43588-022-00219-y |
0.218 |
|
| 2022 |
Georgakopoulos-Soares I, Parada GE, Hemberg M. Secondary structures in RNA synthesis, splicing and translation. Computational and Structural Biotechnology Journal. 20: 2871-2884. PMID 35765654 DOI: 10.1016/j.csbj.2022.05.041 |
0.217 |
|
| 2021 |
Gapp K, Parada GE, Gross F, Corcoba A, Kaur J, Grau E, Hemberg M, Bohacek J, Miska EA. Single paternal dexamethasone challenge programs offspring metabolism and reveals multiple candidates in RNA-mediated inheritance. Iscience. 24: 102870. PMID 34386731 DOI: 10.1016/j.isci.2021.102870 |
0.215 |
|
| 2020 |
Georgakopoulos-Soares I, Mouratidis I, Parada GE, Matharu N, Hemberg M, Ahituv N. Asymmetron: a toolkit for the identification of strand asymmetry patterns in biological sequences. Nucleic Acids Research. PMID 33211865 DOI: 10.1093/nar/gkaa1052 |
0.204 |
|
| 2020 |
Garrido Trigo A, Corraliza AM, Veny M, Lozano J, Ricart E, Ordás I, Masamunt MC, Panés J, Hemberg M, Salas A. P038 A single-cell transcriptomics approach reveals high-resolution cellular signatures in Crohn’s disease Journal of Crohn's and Colitis. 14: S150-S151. DOI: 10.1093/ecco-jcc/jjz203.167 |
0.201 |
|
| 2022 |
Riehl K, Riccio C, Miska EA, Hemberg M. TransposonUltimate: software for transposon classification, annotation and detection. Nucleic Acids Research. PMID 35234904 DOI: 10.1093/nar/gkac136 |
0.2 |
|
| 2022 |
Georgakopoulos-Soares I, Victorino J, Parada GE, Agarwal V, Zhao J, Wong HY, Umar MI, Elor O, Muhwezi A, An JY, Sanders SJ, Kwok CK, Inoue F, Hemberg M, Ahituv N. High-throughput characterization of the role of non-B DNA motifs on promoter function. Cell Genomics. 2. PMID 35573091 DOI: 10.1016/j.xgen.2022.100111 |
0.194 |
|
| 2023 |
Suh J, Kim H, Min J, Yeon HJ, Hemberg M, Scimeca L, Wu MR, Kang HG, Kim YJ, Kim JH. Decoupling NAD metabolic dependency in chondrosarcoma by targeting the SIRT1-HIF-2α axis. Cell Reports. Medicine. 101342. PMID 38128534 DOI: 10.1016/j.xcrm.2023.101342 |
0.189 |
|
| 2007 |
Thompson RM, Hemberg M, Starzomski BM, Shurin JB. Trophic levels and trophic tangles: the prevalence of omnivory in real food webs. Ecology. 88: 612-7. PMID 17503589 DOI: 10.1890/05-1454 |
0.188 |
|
| 2022 |
Baldominos P, Barbera-Mourelle A, Barreiro O, Huang Y, Wight A, Cho JW, Zhao X, Estivill G, Adam I, Sanchez X, McCarthy S, Schaller J, Khan Z, Ruzo A, Pastorello R, ... ... Hemberg M, et al. Quiescent cancer cells resist T cell attack by forming an immunosuppressive niche. Cell. PMID 35447074 DOI: 10.1016/j.cell.2022.03.033 |
0.179 |
|
| 2007 |
Hemberg M, Barahona M. Noise characteristics of interlocked repressilators Bmc Systems Biology. 1: 1-2. DOI: 10.1186/1752-0509-1-S1-S7 |
0.171 |
|
| 2022 |
Quah FX, Hemberg M. SC3s: efficient scaling of single cell consensus clustering to millions of cells. Bmc Bioinformatics. 23: 536. PMID 36503522 DOI: 10.1186/s12859-022-05085-z |
0.168 |
|
| 2023 |
Shiau C, Cao J, Gregory MT, Gong D, Yin X, Cho JW, Wang PL, Su J, Wang S, Reeves JW, Kim TK, Kim Y, Guo JA, Lester NA, Schurman N, ... ... Hemberg M, et al. Therapy-associated remodeling of pancreatic cancer revealed by single-cell spatial transcriptomics and optimal transport analysis. Biorxiv : the Preprint Server For Biology. PMID 37425692 DOI: 10.1101/2023.06.28.546848 |
0.163 |
|
| 2022 |
Gray KJ, Hemberg M, Karumanchi SA. Cell-Free RNA Transcriptome and Prediction of Adverse Pregnancy Outcomes. Clinical Chemistry. PMID 35929553 DOI: 10.1093/clinchem/hvac109 |
0.16 |
|
| 2021 |
Cahan P, Cacchiarelli D, Dunn SJ, Hemberg M, de Sousa Lopes SMC, Morris SA, Rackham OJL, Del Sol A, Wells CA. Computational Stem Cell Biology: Open Questions and Guiding Principles. Cell Stem Cell. 28: 20-32. PMID 33417869 DOI: 10.1016/j.stem.2020.12.012 |
0.147 |
|
| 2021 |
Urbonaite G, Lee JTH, Liu P, Parada GE, Hemberg M, Acar M. Author Correction: A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels. Communications Biology. 4: 885. PMID 34257405 DOI: 10.1038/s42003-021-02420-7 |
0.146 |
|
| 2021 |
Urbonaite G, Lee JTH, Liu P, Parada GE, Hemberg M, Acar M. Author Correction: A yeast-optimized single-cell transcriptomics platform elucidates how mycophenolic acid and guanine alter global mRNA levels. Communications Biology. 4: 885. PMID 34257405 DOI: 10.1038/s42003-021-02420-7 |
0.146 |
|
| 2023 |
Mouratidis I, Chan CSY, Chantzi N, Tsiatsianis GC, Hemberg M, Ahituv N, Georgakopoulos-Soares I. Quasi-prime peptides: identification of the shortest peptide sequences unique to a species. Nar Genomics and Bioinformatics. 5: lqad039. PMID 37101657 DOI: 10.1093/nargab/lqad039 |
0.138 |
|
| 2024 |
Gordon WE, Baek S, Nguyen HP, Kuo YM, Bradley R, Fong SL, Kim N, Galazyuk A, Lee I, Ingala MR, Simmons NB, Schountz T, Cooper LN, Georgakopoulos-Soares I, Hemberg M, et al. Author Correction: Integrative single-cell characterization of a frugivorous and an insectivorous bat kidney and pancreas. Nature Communications. 15: 1777. PMID 38413559 DOI: 10.1038/s41467-024-44937-5 |
0.125 |
|
| 2024 |
Wang Y, Cho JW, Kastrunes G, Buck A, Razimbaud C, Culhane AC, Sun J, Braun DA, Choueiri TK, Wu CJ, Jones K, Nguyen QD, Zhu Z, Wei K, Zhu Q, ... ... Hemberg M, et al. Immune-restoring CAR-T cells display antitumor activity and reverse immunosuppressive TME in a humanized ccRCC mouse model. Iscience. 27: 108879. PMID 38327771 DOI: 10.1016/j.isci.2024.108879 |
0.124 |
|
| 2024 |
Cho JW, Cao J, Hemberg M. Joint analysis of mutational and transcriptional landscapes in human cancer reveals key perturbations during cancer evolution. Genome Biology. 25: 65. PMID 38459554 DOI: 10.1186/s13059-024-03201-1 |
0.12 |
|
| 2024 |
Yuan CU, Quah FX, Hemberg M. Single-cell and spatial transcriptomics: Bridging current technologies with long-read sequencing. Molecular Aspects of Medicine. 96: 101255. PMID 38368637 DOI: 10.1016/j.mam.2024.101255 |
0.12 |
|
| 2020 |
Wang R, Sharma R, Shen X, Laughney AM, Funato K, Clark PJ, Shpokayte M, Morgenstern P, Navare M, Xu Y, Harbi S, Masilionis I, Nanjangud G, Yang Y, Duran-Rehbein G, ... Hemberg M, et al. Adult Human Glioblastomas Harbor Radial Glia-like Cells. Stem Cell Reports. 15: 275-277. PMID 32668221 DOI: 10.1016/j.stemcr.2020.06.002 |
0.112 |
|
| 2024 |
Sit TP, Feord RC, Dunn AW, Chabros J, Oluigbo D, Smith HH, Burn L, Chang E, Boschi A, Yuan Y, Gibbons GM, Khayat-Khoei M, De Angelis F, Hemberg E, Hemberg M, et al. MEA-NAP compares microscale functional connectivity, topology, and network dynamics in organoid or monolayer neuronal cultures. Biorxiv : the Preprint Server For Biology. PMID 38370637 DOI: 10.1101/2024.02.05.578738 |
0.111 |
|
| 2021 |
Schüler SC, Kirkpatrick JM, Schmidt M, Santinha D, Koch P, Di Sanzo S, Cirri E, Hemberg M, Ori A, von Maltzahn J. Extensive remodeling of the extracellular matrix during aging contributes to age-dependent impairments of muscle stem cell functionality. Cell Reports. 35: 109223. PMID 34107247 DOI: 10.1016/j.celrep.2021.109223 |
0.099 |
|
| 2004 |
O'Reilly UM, Hemberg M, Menges A. Evolutionary computation and artificial life in architecture: Exploring the potential of generative and genetic algorithms as operative design tools Architectural Design. 74: 49-53. |
0.059 |
|
| 2007 |
O'Reilly UM, Hemberg M. Integrating generative growth and evolutionary computation for form exploration Genetic Programming and Evolvable Machines. 8: 163-186. DOI: 10.1007/s10710-007-9025-y |
0.053 |
|
| 2012 |
McDermott J, Swafford JM, Hemberg M, Byrne J, Hemberg E, Fenton M, McNally C, Shotton E, O'Neill M. String-rewriting grammars for evolutionary architectural design Environment and Planning B: Planning and Design. 39: 713-731. DOI: 10.1068/b38037 |
0.034 |
|
| 1998 |
Mattiasson AC, Hemberg M. Intimacy--meeting needs and respecting privacy in the care of elderly people: what is a good moral attitude on the part of the nurse/carer? Nursing Ethics. 5: 527-34. PMID 9856070 |
0.03 |
|
| 2004 |
Hemberg M, O'Reilly UM. Extending Grammatical Evolution to Evolve Digital Surfaces with Genr8 Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 3003: 299-308. |
0.02 |
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