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Longzhi Tan, Ph.D. - Publications

Affiliations: 
2022- Neurobiology Stanford University, Palo Alto, CA 
Area:
Single-cell genomics, epigenomics, neurodevelopment
Website:
https://3dgeno.me
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23 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wu H, Zhang J, Jian F, Chen JP, Zheng Y, Tan L, Sunney Xie X. Simultaneous single-cell three-dimensional genome and gene expression profiling uncovers dynamic enhancer connectivity underlying olfactory receptor choice. Nature Methods. PMID 38622459 DOI: 10.1038/s41592-024-02239-0  0.76
2023 Bashkirova EV, Klimpert N, Monahan K, Campbell CE, Osinski J, Tan L, Schieren I, Pourmorady A, Stecky B, Barnea G, Xie XS, Abdus-Saboor I, Shykind BM, Marlin BJ, Gronostajski RM, et al. Opposing, spatially-determined epigenetic forces impose restrictions on stochastic olfactory receptor choice. Elife. 12. PMID 38108811 DOI: 10.7554/eLife.87445  0.63
2023 Tan L, Shi J, Moghadami S, Parasar B, Wright CP, Seo Y, Vallejo K, Cobos I, Duncan L, Chen R, Deisseroth K. Lifelong restructuring of 3D genome architecture in cerebellar granule cells. Science (New York, N.Y.). 381: 1112-1119. PMID 37676945 DOI: 10.1126/science.adh3253  0.714
2023 Bashkirova EV, Klimpert N, Pourmorady A, Monahan K, Campbell CE, Osinski JM, Tan L, Schieren I, Stecky B, Barnea G, Xie XS, Abdus-Saboor I, Shykind B, Marlin BJ, Gronostajski RM, et al. Opposing, spatially-determined epigenetic forces impose restrictions on stochastic olfactory receptor choice. Biorxiv : the Preprint Server For Biology. PMID 36993168 DOI: 10.1101/2023.03.15.532726  0.652
2023 Tan L, Shi J, Moghadami S, Wright CP, Parasar B, Seo Y, Vallejo K, Cobos I, Duncan L, Chen R, Deisseroth K. Cerebellar Granule Cells Develop Non-neuronal 3D Genome Architecture over the Lifespan. Biorxiv : the Preprint Server For Biology. PMID 36865235 DOI: 10.1101/2023.02.25.530020  0.714
2023 Hsueh B, Chen R, Jo Y, Tang D, Raffiee M, Kim YS, Inoue M, Randles S, Ramakrishnan C, Patel S, Kim DK, Liu TX, Kim SH, Tan L, Mortazavi L, et al. Cardiogenic control of affective behavioural state. Nature. PMID 36859543 DOI: 10.1038/s41586-023-05748-8  0.687
2022 Chi Y, Shi J, Xing D, Tan L. Every gene everywhere all at once: High-precision measurement of 3D chromosome architecture with single-cell Hi-C. Frontiers in Molecular Biosciences. 9: 959688. PMID 36275628 DOI: 10.3389/fmolb.2022.959688  0.496
2022 Wu H, Li X, Jian F, Yisimayi A, Zheng Y, Tan L, Xing D, Xie XS. Highly sensitive single-cell chromatin accessibility assay and transcriptome coassay with METATAC. Proceedings of the National Academy of Sciences of the United States of America. 119: e2206450119. PMID 36161934 DOI: 10.1073/pnas.2206450119  0.626
2021 Tan L. Determining the 3D genome structure of a single mammalian cell with Dip-C. Star Protocols. 2: 100622. PMID 34195675 DOI: 10.1016/j.xpro.2021.100622  0.507
2021 Fei A, Wu W, Tan L, Tang C, Xu Z, Huo X, Bao H, Kong Y, Johnson M, Hartmann G, Talay M, Yang C, Riegler C, Herrera KJ, Engert F, et al. Coordination of two enhancers drives expression of olfactory trace amine-associated receptors. Nature Communications. 12: 3798. PMID 34145235 DOI: 10.1038/s41467-021-23823-4  0.61
2021 Xing D, Tan L, Chang CH, Li H, Xie XS. Accurate SNV detection in single cells by transposon-based whole-genome amplification of complementary strands. Proceedings of the National Academy of Sciences of the United States of America. 118. PMID 33593904 DOI: 10.1073/pnas.2013106118  0.671
2021 Tan L, Ma W, Wu H, Zheng Y, Xing D, Chen R, Li X, Daley N, Deisseroth K, Xie XS. Changes in genome architecture and transcriptional dynamics progress independently of sensory experience during post-natal brain development. Cell. PMID 33484631 DOI: 10.1016/j.cell.2020.12.032  0.771
2019 Tan L. Three-dimensional genome structure of a single cell. Science (New York, N.Y.). 366: 964-965. PMID 31753992 DOI: 10.1126/science.aaz7774  0.478
2019 Tan L, Xing D, Daley N, Xie XS. Three-dimensional genome structures of single sensory neurons in mouse visual and olfactory systems. Nature Structural & Molecular Biology. PMID 30936528 DOI: 10.1038/S41594-019-0205-2  0.723
2018 Tan L, Xing D, Chang CH, Li H, Xie XS. Three-dimensional genome structures of single diploid human cells. Science (New York, N.Y.). 361: 924-928. PMID 30166492 DOI: 10.1126/Science.Aat5641  0.694
2018 Tan L, Xie XS. A Near-complete Spatial Map of Olfactory Receptors in the Mouse Main Olfactory Epithelium. Chemical Senses. PMID 29796642 DOI: 10.1093/chemse/bjy030  0.578
2017 Chen C, Xing D, Tan L, Li H, Zhou G, Huang L, Xie XS. Single-cell whole-genome analyses by Linear Amplification via Transposon Insertion (LIANTI). Science (New York, N.Y.). 356: 189-194. PMID 28408603 DOI: 10.1126/Science.Aak9787  0.678
2015 Tan L, Li Q, Xie XS. Olfactory sensory neurons transiently express multiple olfactory receptors during development. Molecular Systems Biology. 11: 844. PMID 26646940 DOI: 10.15252/Msb.20156639  0.652
2015 Chapman AR, He Z, Lu S, Yong J, Tan L, Tang F, Xie XS. Single cell transcriptome amplification with MALBAC. Plos One. 10: e0120889. PMID 25822772 DOI: 10.1371/Journal.Pone.0120889  0.696
2013 Tan L, Zong C, Xie XS. Rare event of histone demethylation can initiate singular gene expression of olfactory receptors. Proceedings of the National Academy of Sciences of the United States of America. 110: 21148-52. PMID 24344257 DOI: 10.1073/Pnas.1321511111  0.612
2013 Kamberov YG, Wang S, Tan J, Gerbault P, Wark A, Tan L, Yang Y, Li S, Tang K, Chen H, Powell A, Itan Y, Fuller D, Lohmueller J, Mao J, et al. Modeling recent human evolution in mice by expression of a selected EDAR variant. Cell. 152: 691-702. PMID 23415220 DOI: 10.1016/J.Cell.2013.01.016  0.565
2012 Tan L, Gore J. Slowly switching between environments facilitates reverse evolution in small populations. Evolution. 66: 3144-3154. PMID 23025604 DOI: 10.1111/J.1558-5646.2012.01680.X  0.407
2011 Tan L, Serene S, Chao HX, Gore J. Hidden randomness between fitness landscapes limits reverse evolution. Physical Review Letters. 106: 198102. PMID 21668204 DOI: 10.1103/Physrevlett.106.198102  0.405
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