| Year |
Citation |
Score |
| 2022 |
Jahan A, Akter MT, Takemoto K, Oura T, Shitara A, Semba S, Nezu A, Suto S, Nagai T, Tanimura A. Insertion of circularly permuted cyan fluorescent protein into the ligand-binding domain of inositol 1,4,5-trisphosphate receptor for enhanced FRET upon binding of fluorescent ligand. Cell Calcium. 108: 102668. PMID 36335765 DOI: 10.1016/j.ceca.2022.102668 |
0.311 |
|
| 2022 |
Sugiura K, Nagai T. Extension of the short wavelength side of fluorescent proteins using hydrated chromophores, and its application. Communications Biology. 5: 1172. PMID 36329112 DOI: 10.1038/s42003-022-04153-7 |
0.348 |
|
| 2021 |
Wazawa T, Noma R, Uto S, Sugiura K, Washio T, Nagai T. A Photoswitchable Fluorescent Protein for Hours-Time-Lapse and Sub-Second-Resolved Super-Resolution Imaging. Microscopy (Oxford, England). PMID 33481018 DOI: 10.1093/jmicro/dfab001 |
0.321 |
|
| 2019 |
Lu K, Vu CQ, Matsuda T, Nagai T. Fluorescent Protein-Based Indicators for Functional Super-Resolution Imaging of Biomolecular Activities in Living Cells. International Journal of Molecular Sciences. 20. PMID 31744242 DOI: 10.3390/ijms20225784 |
0.363 |
|
| 2019 |
Farhana I, Hossain MN, Suzuki K, Matsuda T, Nagai T. Genetically Encoded Fluorescence/Bioluminescence Bimodal Indicators for Ca Imaging. Acs Sensors. PMID 31276380 DOI: 10.1021/acssensors.9b00531 |
0.415 |
|
| 2018 |
Arai Y, Takauchi H, Ogami Y, Fujiwara S, Nakano M, Matsuda T, Nagai T. Spontaneously Blinking Fluorescent Protein for Simple Single Laser Super-Resolution Live Cell Imaging. Acs Chemical Biology. 13: 1938-1943. PMID 29963852 DOI: 10.1021/acschembio.8b00200 |
0.308 |
|
| 2018 |
Riani YD, Matsuda T, Takemoto K, Nagai T. Green monomeric photosensitizing fluorescent protein for photo-inducible protein inactivation and cell ablation. Bmc Biology. 16: 50. PMID 29712573 DOI: 10.1186/s12915-018-0514-7 |
0.318 |
|
| 2018 |
Hara-Kuge S, Nishihara T, Matsuda T, Kitazono T, Teramoto T, Nagai T, Ishihara T. An improved inverse-type Ca2+ indicator can detect putative neuronal inhibition in Caenorhabditis elegans by increasing signal intensity upon Ca2+ decrease. Plos One. 13: e0194707. PMID 29694380 DOI: 10.1371/journal.pone.0194707 |
0.322 |
|
| 2018 |
Hossain MN, Suzuki K, Iwano M, Matsuda T, Nagai T. Bioluminescent low-affinity Caindicator for ER with multicolor calcium imaging in single living cells. Acs Chemical Biology. PMID 29494125 DOI: 10.1021/acschembio.7b01014 |
0.36 |
|
| 2017 |
Suzuki M, Sato M, Koyama H, Hara Y, Hayashi K, Yasue N, Imamura H, Fujimori T, Nagai T, Campbell RE, Ueno N. Distinct intracellular Ca(2+) dynamics regulate apical constriction and differentially contribute to neural tube closure. Development (Cambridge, England). PMID 28219946 DOI: 10.1242/Dev.141952 |
0.307 |
|
| 2017 |
Kim SY, Arai Y, Tani T, Takatsuka H, Saito Y, Kawashima T, Kawakami S, Miyawaki A, Nagai T. Simultaneous imaging of multiple cellular events using high-accuracy fluorescence polarization microscopy. Microscopy (Oxford, England). PMID 28043995 DOI: 10.1093/jmicro/dfw110 |
0.586 |
|
| 2016 |
Suzuki K, Kimura T, Shinoda H, Bai G, Daniels MJ, Arai Y, Nakano M, Nagai T. Five colour variants of bright luminescent protein for real-time multicolour bioimaging. Nature Communications. 7: 13718. PMID 27966527 DOI: 10.1038/ncomms13718 |
0.361 |
|
| 2016 |
Saito K, Nakano M, Nagai T. Luminescence Imaging: (a) Multicolor Visualization of Ca(2+) Dynamics in Different Cellular Compartments and (b) Video-Rate Tumor Detection in a Freely Moving Mouse. Methods in Molecular Biology (Clifton, N.J.). 1461: 289-97. PMID 27424914 DOI: 10.1007/978-1-4939-3813-1_24 |
0.304 |
|
| 2016 |
Lissek T, Obenhaus HA, Ditzel DA, Nagai T, Miyawaki A, Sprengel R, Hasan MT. General Anesthetic Conditions Induce Network Synchrony and Disrupt Sensory Processing in the Cortex. Frontiers in Cellular Neuroscience. 10: 64. PMID 27147963 DOI: 10.3389/Fncel.2016.00064 |
0.443 |
|
| 2016 |
Morikawa TJ, Fujita H, Kitamura A, Horio T, Yamamoto J, Kinjo M, Sasaki A, Machiyama H, Yoshizawa K, Ichimura T, Imada K, Nagai T, Watanabe TM. Dependence of fluorescent protein brightness on protein concentration in solution and enhancement of it. Scientific Reports. 6: 22342. PMID 26956628 DOI: 10.1038/srep22342 |
0.374 |
|
| 2015 |
Iwano M, Ito K, Fujii S, Kakita M, Asano-Shimosato H, Igarashi M, Kaothien-Nakayama P, Entani T, Kanatani A, Takehisa M, Tanaka M, Komatsu K, Shiba H, Nagai T, Miyawaki A, et al. Calcium signalling mediates self-incompatibility response in the Brassicaceae. Nature Plants. 1: 15128. PMID 27250681 DOI: 10.1038/nplants.2015.128 |
0.483 |
|
| 2015 |
Uno SN, Tiwari DK, Kamiya M, Arai Y, Nagai T, Urano Y. A guide to use photocontrollable fluorescent proteins and synthetic smart fluorophores for nanoscopy. Microscopy (Oxford, England). 64: 263-77. PMID 26152215 DOI: 10.1093/jmicro/dfv037 |
0.329 |
|
| 2015 |
Tiwari DK, Arai Y, Yamanaka M, Matsuda T, Agetsuma M, Nakano M, Fujita K, Nagai T. A fast- and positively photoswitchable fluorescent protein for ultralow-laser-power RESOLFT nanoscopy. Nature Methods. 12: 515-8. PMID 25894946 DOI: 10.1038/nmeth.3362 |
0.313 |
|
| 2015 |
Takai A, Nakano M, Saito K, Haruno R, Watanabe TM, Ohyanagi T, Jin T, Okada Y, Nagai T. Expanded palette of Nano-lanterns for real-time multicolor luminescence imaging. Proceedings of the National Academy of Sciences of the United States of America. 112: 4352-6. PMID 25831507 DOI: 10.1073/pnas.1418468112 |
0.358 |
|
| 2014 |
Oshima Y, Imamura T, Shintani A, Kajiura-Kobayashi H, Hibi T, Nagai T, Nonaka S, Nemoto T. Ultrasensitive imaging of Ca2+ dynamics in pancreatic acinar cells of yellow cameleon-nano transgenic mice. International Journal of Molecular Sciences. 15: 19971-86. PMID 25372943 DOI: 10.3390/ijms151119971 |
0.374 |
|
| 2014 |
Matsuda T, Nagai T. Quantitative measurement of intracellular protein dynamics using photobleaching or photoactivation of fluorescent proteins. Microscopy (Oxford, England). 63: 403-8. PMID 25268018 DOI: 10.1093/jmicro/dfu033 |
0.316 |
|
| 2013 |
Yamanaka M, Saito K, Smith NI, Kawata S, Nagai T, Fujita K. Saturated excitation of fluorescent proteins for subdiffraction-limited imaging of living cells in three dimensions. Interface Focus. 3: 20130007. PMID 24511385 DOI: 10.1098/rsfs.2013.0007 |
0.35 |
|
| 2013 |
Miyawaki A, Nagai T, Mizuno H. Imaging intracellular free Ca2+ concentration using yellow cameleons. Cold Spring Harbor Protocols. 2013. PMID 24184769 DOI: 10.1101/pdb.prot078642 |
0.664 |
|
| 2013 |
Tiwari DK, Nagai T. Smart fluorescent proteins: innovation for barrier-free superresolution imaging in living cells. Development, Growth & Differentiation. 55: 491-507. PMID 23635320 DOI: 10.1111/dgd.12064 |
0.305 |
|
| 2013 |
Horikawa K, Nagai T. [Spatiotemporal regulation of Ca(2 +) dynamics in live cells revealed by Ca(2 +) imaging]. Clinical Calcium. 23: 527-33. PMID 23545742 |
0.309 |
|
| 2013 |
Wu J, Liu L, Matsuda T, Zhao Y, Rebane A, Drobizhev M, Chang YF, Araki S, Arai Y, March K, Hughes TE, Sagou K, Miyata T, Nagai T, Li WH, et al. Improved orange and red Ca²± indicators and photophysical considerations for optogenetic applications. Acs Chemical Neuroscience. 4: 963-72. PMID 23452507 DOI: 10.1021/Cn400012B |
0.402 |
|
| 2013 |
Hoi H, Matsuda T, Nagai T, Campbell RE. Highlightable Ca2+ indicators for live cell imaging. Journal of the American Chemical Society. 135: 46-9. PMID 23256581 DOI: 10.1021/Ja310184A |
0.424 |
|
| 2012 |
Kominami K, Nagai T, Sawasaki T, Tsujimura Y, Yashima K, Sunaga Y, Tsuchimochi M, Nishimura J, Chiba K, Nakabayashi J, Koyamada K, Endo Y, Yokota H, Miyawaki A, Manabe N, et al. In vivo imaging of hierarchical spatiotemporal activation of caspase-8 during apoptosis. Plos One. 7: e50218. PMID 23185580 DOI: 10.1371/journal.pone.0050218 |
0.419 |
|
| 2012 |
Iwano M, Ngo QA, Entani T, Shiba H, Nagai T, Miyawaki A, Isogai A, Grossniklaus U, Takayama S. Cytoplasmic Ca2+ changes dynamically during the interaction of the pollen tube with synergid cells. Development (Cambridge, England). 139: 4202-9. PMID 23093426 DOI: 10.1242/Dev.081208 |
0.522 |
|
| 2012 |
Kominami K, Nakabayashi J, Nagai T, Tsujimura Y, Chiba K, Kimura H, Miyawaki A, Sawasaki T, Yokota H, Manabe N, Sakamaki K. The molecular mechanism of apoptosis upon caspase-8 activation: quantitative experimental validation of a mathematical model. Biochimica Et Biophysica Acta. 1823: 1825-40. PMID 22801217 DOI: 10.1016/j.bbamcr.2012.07.003 |
0.452 |
|
| 2012 |
Chang YF, Arai Y, Nagai T. Optogenetic activation during detector "dead time" enables compatible real-time fluorescence imaging. Neuroscience Research. 73: 341-7. PMID 22652483 DOI: 10.1016/j.neures.2012.05.007 |
0.31 |
|
| 2011 |
Yamada Y, Michikawa T, Hashimoto M, Horikawa K, Nagai T, Miyawaki A, Häusser M, Mikoshiba K. Quantitative comparison of genetically encoded Ca indicators in cortical pyramidal cells and cerebellar Purkinje cells. Frontiers in Cellular Neuroscience. 5: 18. PMID 21994490 DOI: 10.3389/fncel.2011.00018 |
0.608 |
|
| 2011 |
Zhao Y, Araki S, Wu J, Teramoto T, Chang YF, Nakano M, Abdelfattah AS, Fujiwara M, Ishihara T, Nagai T, Campbell RE. An expanded palette of genetically encoded Ca²⺠indicators. Science (New York, N.Y.). 333: 1888-91. PMID 21903779 DOI: 10.1126/Science.1208592 |
0.41 |
|
| 2011 |
Nakano M, Imamura H, Nagai T, Noji H. Ca2+ Regulation of Mitochondrial ATP Synthesis Visualized at the Single Cell Level Acs Chemical Biology. 6: 709-715. PMID 21488691 DOI: 10.1021/Cb100313N |
0.409 |
|
| 2011 |
Takemoto K, Matsuda T, McDougall M, Klaubert DH, Hasegawa A, Los GV, Wood KV, Miyawaki A, Nagai T. Chromophore-assisted light inactivation of HaloTag fusion proteins labeled with eosin in living cells Acs Chemical Biology. 6: 401-406. PMID 21226520 DOI: 10.1021/cb100431e |
0.476 |
|
| 2010 |
Horikawa K, Yamada Y, Matsuda T, Kobayashi K, Hashimoto M, Matsu-ura T, Miyawaki A, Michikawa T, Mikoshiba K, Nagai T. Spontaneous network activity visualized by ultrasensitive Ca(2+) indicators, yellow Cameleon-Nano. Nature Methods. 7: 729-32. PMID 20693999 DOI: 10.1038/nmeth.1488 |
0.589 |
|
| 2010 |
Lütcke H, Murayama M, Hahn T, Margolis DJ, Astori S, Zum Alten Borgloh SM, Göbel W, Yang Y, Tang W, Kügler S, Sprengel R, Nagai T, Miyawaki A, Larkum ME, Helmchen F, et al. Optical recording of neuronal activity with a genetically-encoded calcium indicator in anesthetized and freely moving mice. Frontiers in Neural Circuits. 4: 9. PMID 20461230 DOI: 10.3389/Fncir.2010.00009 |
0.529 |
|
| 2010 |
Saito K, Hatsugai N, Horikawa K, Kobayashi K, Matsu-Ura T, Mikoshiba K, Nagai T. Auto-luminescent genetically-encoded ratiometric indicator for real-time Ca2+ imaging at the single cell level. Plos One. 5: e9935. PMID 20376337 DOI: 10.1371/journal.pone.0009935 |
0.521 |
|
| 2010 |
Hong JH, Min CH, Jeong B, Kojiya T, Morioka E, Nagai T, Ikeda M, Lee KJ. Intracellular calcium spikes in rat suprachiasmatic nucleus neurons induced by BAPTA-based calcium dyes. Plos One. 5: e9634. PMID 20224788 DOI: 10.1371/Journal.Pone.0009634 |
0.314 |
|
| 2009 |
Iwano M, Entani T, Shiba H, Kakita M, Nagai T, Mizuno H, Miyawaki A, Shoji T, Kubo K, Isogai A, Takayama S. Fine-tuning of the cytoplasmic Ca2+ concentration is essential for pollen tube growth. Plant Physiology. 150: 1322-34. PMID 19474213 DOI: 10.1104/pp.109.139329 |
0.647 |
|
| 2009 |
Tomosugi W, Matsuda T, Tani T, Nemoto T, Kotera I, Saito K, Horikawa K, Nagai T. An ultramarine fluorescent protein with increased photostability and pH insensitivity. Nature Methods. 6: 351-3. PMID 19349978 DOI: 10.1038/nmeth.1317 |
0.379 |
|
| 2009 |
Matsuda T, Nagai T. [Bioimaging and analysis of protein dynamics with a novel photoswichable fluorescent protein probe]. Tanpakushitsu Kakusan Koso. Protein, Nucleic Acid, Enzyme. 53: 1858-64. PMID 19044022 |
0.313 |
|
| 2008 |
Sunabori T, Tokunaga A, Nagai T, Sawamoto K, Okabe M, Miyawaki A, Matsuzaki Y, Miyata T, Okano H. Cell-cycle-specific nestin expression coordinates with morphological changes in embryonic cortical neural progenitors. Journal of Cell Science. 121: 1204-12. PMID 18349072 DOI: 10.1242/Jcs.025064 |
0.456 |
|
| 2008 |
Matsuda T, Miyawaki A, Nagai T. Direct measurement of protein dynamics inside cells using a rationally designed photoconvertible protein. Nature Methods. 5: 339-45. PMID 18345008 DOI: 10.1038/nmeth.1193 |
0.535 |
|
| 2007 |
Takemoto K, Kuranaga E, Tonoki A, Nagai T, Miyawaki A, Miura M. Local initiation of caspase activation in Drosophila salivary gland programmed cell death in vivo. Proceedings of the National Academy of Sciences of the United States of America. 104: 13367-72. PMID 17679695 DOI: 10.1073/pnas.0702733104 |
0.435 |
|
| 2006 |
Nagai T. [Various applications of fluorescent proteins for cell biology]. Seikagaku. the Journal of Japanese Biochemical Society. 78: 759-63. PMID 16986726 |
0.348 |
|
| 2006 |
Kazuno AA, Munakata K, Nagai T, Shimozono S, Tanaka M, Yoneda M, Kato N, Miyawaki A, Kato T. Identification of mitochondrial DNA polymorphisms that alter mitochondrial matrix pH and intracellular calcium dynamics. Plos Genetics. 2: e128. PMID 16895436 DOI: 10.1371/journal.pgen.0020128 |
0.418 |
|
| 2005 |
Kohyama J, Tokunaga A, Fujita Y, Miyoshi H, Nagai T, Miyawaki A, Nakao K, Matsuzaki Y, Okano H. Visualization of spatiotemporal activation of Notch signaling: live monitoring and significance in neural development. Developmental Biology. 286: 311-25. PMID 16153632 DOI: 10.1016/J.Ydbio.2005.08.003 |
0.458 |
|
| 2005 |
Miyawaki A, Nagai T, Mizuno H. Engineering fluorescent proteins. Advances in Biochemical Engineering/Biotechnology. 95: 1-15. PMID 16080263 DOI: 10.1007/b102208 |
0.693 |
|
| 2005 |
Takao K, Okamoto K, Nakagawa T, Neve RL, Nagai T, Miyawaki A, Hashikawa T, Kobayashi S, Hayashi Y. Visualization of synaptic Ca2+ /calmodulin-dependent protein kinase II activity in living neurons. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 25: 3107-12. PMID 15788767 DOI: 10.1523/Jneurosci.0085-05.2005 |
0.526 |
|
| 2005 |
Lin X, Várnai P, Csordás G, Balla A, Nagai T, Miyawaki A, Balla T, Hajnóczky G. Control of calcium signal propagation to the mitochondria by inositol 1,4,5-trisphosphate-binding proteins. The Journal of Biological Chemistry. 280: 12820-32. PMID 15644334 DOI: 10.1074/Jbc.M411591200 |
0.518 |
|
| 2004 |
Iwano M, Shiba H, Miwa T, Che FS, Takayama S, Nagai T, Miyawaki A, Isogai A. Ca2+ dynamics in a pollen grain and papilla cell during pollination of Arabidopsis. Plant Physiology. 136: 3562-71. PMID 15489279 DOI: 10.1104/pp.104.046961 |
0.536 |
|
| 2004 |
Okamoto K, Nagai T, Miyawaki A, Hayashi Y. Rapid and persistent modulation of actin dynamics regulates postsynaptic reorganization underlying bidirectional plasticity. Nature Neuroscience. 7: 1104-12. PMID 15361876 DOI: 10.1038/nn1311 |
0.42 |
|
| 2004 |
Nagai T, Yamada S, Tominaga T, Ichikawa M, Miyawaki A. Expanded dynamic range of fluorescent indicators for Ca(2+) by circularly permuted yellow fluorescent proteins. Proceedings of the National Academy of Sciences of the United States of America. 101: 10554-9. PMID 15247428 DOI: 10.1073/Pnas.0400417101 |
0.617 |
|
| 2004 |
Hasan MT, Friedrich RW, Euler T, Larkum ME, Giese G, Both M, Duebel J, Waters J, Bujard H, Griesbeck O, Tsien RY, Nagai T, Miyawaki A, Denk W. Functional fluorescent Ca2+ indicator proteins in transgenic mice under TET control. Plos Biology. 2: e163. PMID 15208716 DOI: 10.1371/Journal.Pbio.0020163 |
0.646 |
|
| 2004 |
Nagai T, Miyawaki A. A high-throughput method for development of FRET-based indicators for proteolysis. Biochemical and Biophysical Research Communications. 319: 72-7. PMID 15158444 DOI: 10.1016/j.bbrc.2004.04.147 |
0.562 |
|
| 2004 |
Karasawa S, Araki T, Nagai T, Mizuno H, Miyawaki A. Cyan-emitting and orange-emitting fluorescent proteins as a donor/acceptor pair for fluorescence resonance energy transfer. The Biochemical Journal. 381: 307-12. PMID 15065984 DOI: 10.1042/BJ20040321 |
0.668 |
|
| 2004 |
Miyawaki A, Nagai T, Mizuno H. Mechanisms of protein fluorophore formation and engineering. Current Opinion in Chemical Biology. 7: 557-62. PMID 14580558 DOI: 10.1016/s1367-5931(03)00097-8 |
0.676 |
|
| 2003 |
Miyawaki A, Mizuno H, Nagai T, Sawano A. Development of genetically encoded fluorescent indicators for calcium. Methods in Enzymology. 360: 202-25. PMID 12622151 DOI: 10.1016/s0076-6879(03)60111-4 |
0.655 |
|
| 2003 |
Takemoto K, Nagai T, Miyawaki A, Miura M. Spatio-temporal activation of caspase revealed by indicator that is insensitive to environmental effects. The Journal of Cell Biology. 160: 235-43. PMID 12527749 DOI: 10.1083/jcb.200207111 |
0.488 |
|
| 2002 |
Rekas A, Alattia JR, Nagai T, Miyawaki A, Ikura M. Crystal structure of venus, a yellow fluorescent protein with improved maturation and reduced environmental sensitivity. The Journal of Biological Chemistry. 277: 50573-8. PMID 12370172 DOI: 10.1074/jbc.M209524200 |
0.521 |
|
| 2002 |
Shimozono S, Fukano T, Nagai T, Kirino Y, Mizuno H, Miyawaki A. Confocal imaging of subcellular Ca2+ concentrations using a dual-excitation ratiometric indicator based on green fluorescent protein. Science's Stke : Signal Transduction Knowledge Environment. 2002: pl4. PMID 11917155 DOI: 10.1126/Stke.2002.125.Pl4 |
0.701 |
|
| 2002 |
Nagai T, Ibata K, Park ES, Kubota M, Mikoshiba K, Miyawaki A. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications. Nature Biotechnology. 20: 87-90. PMID 11753368 DOI: 10.1038/nbt0102-87 |
0.647 |
|
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