| Year |
Citation |
Score |
| 2023 |
Lan W, Quan L, Li Y, Ou J, Duan B, Mei T, Tan X, Chen W, Feng L, Wan C, Zhao W, Chodosh J, Seto D, Zhang Q. Isolation of novel simian adenoviruses from macaques for development of a vector for human gene therapy and vaccines. Journal of Virology. e0101423. PMID 37712705 DOI: 10.1128/jvi.01014-23 |
0.395 |
|
| 2023 |
Zhao S, Wu X, Tan Z, Ren Y, Li L, Ou J, Lin Y, Song H, Feng L, Seto D, Wu J, Zhang Q, Rong Z. Generation of Human Embryonic Stem Cell-Derived Lung Organoids for Modeling Infection and Replication Differences between Human Adenovirus Types 3 and 55 and Evaluating Potential Antiviral Drugs. Journal of Virology. e0020923. PMID 37120831 DOI: 10.1128/jvi.00209-23 |
0.353 |
|
| 2022 |
Davis P, Seto D, Mahadevan P. CoreGenes5.0: An Updated User-Friendly Webserver for the Determination of Core Genes from Sets of Viral and Bacterial Genomes. Viruses. 14. PMID 36423143 DOI: 10.3390/v14112534 |
0.37 |
|
| 2022 |
Wu X, Zhang J, Lan W, Quan L, Ou J, Zhao W, Wu J, Woo PCY, Seto D, Zhang Q. Molecular Typing and Rapid Identification of Human Adenoviruses Associated With Respiratory Diseases Using Universal PCR and Sequencing Primers for the Three Major Capsid Genes: Penton Base, Hexon, and Fiber. Frontiers in Microbiology. 13: 911694. PMID 35633710 DOI: 10.3389/fmicb.2022.911694 |
0.536 |
|
| 2022 |
Ou J, Lan W, Wu X, Zhao T, Duan B, Yang P, Ren Y, Quan L, Zhao W, Seto D, Chodosh J, Luo Z, Wu J, Zhang Q. Tracking SARS-CoV-2 Omicron diverse spike gene mutations identifies multiple inter-variant recombination events. Signal Transduction and Targeted Therapy. 7: 138. PMID 35474215 DOI: 10.1038/s41392-022-00992-2 |
0.404 |
|
| 2021 |
Ou J, Zhou Z, Dai R, Zhang J, Zhao S, Wu X, Lan W, Ren Y, Cui L, Lan Q, Lu L, Seto D, Chodosh J, Wu J, Zhang G, et al. V367F mutation in SARS-CoV-2 spike RBD emerging during the early transmission phase enhances viral infectivity through increased human ACE2 receptor binding affinity. Journal of Virology. JVI0061721. PMID 34105996 DOI: 10.1128/JVI.00617-21 |
0.368 |
|
| 2021 |
Ji T, Li L, Li W, Zheng X, Ye X, Chen H, Zhou Q, Jia H, Chen B, Lin Z, Chen H, Huang S, Seto D, Chen L, Feng L. Emergence and characterization of a putative novel human adenovirus recombinant HAdV-C104 causing pneumonia in Southern China. Virus Evolution. 7: veab018. PMID 33732504 DOI: 10.1093/ve/veab018 |
0.417 |
|
| 2020 |
Kang J, Ismail AM, Dehghan S, Rajaiya J, Allard MW, Lim HC, Dyer DW, Chodosh J, Seto D. Genomics-based re-examination of the taxonomy and phylogeny of human and simian Mastadenoviruses: an evolving whole genomes approach, revealing putative zoonosis, anthroponosis, and amphizoonosis. Cladistics : the International Journal of the Willi Hennig Society. 36: 358-373. PMID 34618969 DOI: 10.1111/cla.12422 |
0.738 |
|
| 2020 |
Yan Y, Ou J, Zhao S, Ma K, Lan W, Guan W, Wu X, Zhang J, Zhang B, Zhao W, Wan C, Shi W, Wu J, Seto D, Yu Z, et al. Characterization of Influenza A and B Viruses Circulating in Southern China During the 2017-2018 Season. Frontiers in Microbiology. 11: 1079. PMID 32547518 DOI: 10.3389/fmicb.2020.01079 |
0.345 |
|
| 2020 |
Yan Y, Jing S, Feng L, Zhang J, Zeng Z, Li M, Zhao S, Ou J, Lan W, Guan W, Wu X, Wu J, Seto D, Zhang Q. Construction and Characterization of a Novel Recombinant Attenuated and Replication-Deficient Candidate Human Adenovirus Type 3 Vaccine: "Adenovirus Vaccine Within an Adenovirus Vector". Virologica Sinica. PMID 32458297 DOI: 10.1007/s12250-020-00234-1 |
0.376 |
|
| 2019 |
Ashrafali MI, Zhou X, Dyer DW, Seto D, Rajaiya J, Chodosh J. Genomic foundations of evolution and ocular pathogenesis in human adenovirus species D. Febs Letters. PMID 31769017 DOI: 10.1002/1873-3468.13693 |
0.486 |
|
| 2019 |
Borkenhagen LK, Fieldhouse JK, Seto D, Gray GC. Are adenoviruses zoonotic? A systematic review of the evidence. Emerging Microbes & Infections. 8: 1679-1687. PMID 31749409 DOI: 10.1080/22221751.2019.1690953 |
0.416 |
|
| 2019 |
Coleman KK, Wong CC, Jayakumar J, Nguyen TT, Wong AWL, Yadana S, Thoon KC, Chan KP, Low JG, Kalimuddin S, Dehghan S, Kang J, Shamsaddini A, Seto D, Su YCF, et al. Adenoviral Infections in Singapore: Should New Antiviral Therapies and Vaccines Be Adopted? The Journal of Infectious Diseases. PMID 31563943 DOI: 10.1093/Infdis/Jiz489 |
0.667 |
|
| 2019 |
Dehghan S, Seto J, Liu EB, Ismail AM, Madupu R, Heim A, Jones MS, Dyer DW, Chodosh J, Seto D. A zoonotic adenoviral human pathogen emerged through genomic recombination amongst human and nonhuman simian hosts. Journal of Virology. PMID 31243128 DOI: 10.1128/Jvi.00564-19 |
0.589 |
|
| 2019 |
Singh G, Ismail AM, Lee JY, Ramke M, Lee JS, Dyer DW, Seto D, Rajaiya J, Chodosh J. Divergent Evolution of E1A CR3 in Human Adenovirus Species D. Viruses. 11. PMID 30744049 DOI: 10.3390/V11020143 |
0.443 |
|
| 2019 |
Zhang J, Kang J, Dehghan S, Sridhar S, Lau SKP, Ou J, Woo PCY, Zhang Q, Seto D. A Survey of Recent Adenoviral Respiratory Pathogens in Hong Kong Reveals Emergent and Recombinant Human Adenovirus Type 4 (HAdV-E4) Circulating in Civilian Populations. Viruses. 11. PMID 30708990 DOI: 10.3390/v11020129 |
0.664 |
|
| 2018 |
Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J. Corrigendum: Adenoviromics: Mining the Human Adenovirus Species D Genome. Frontiers in Microbiology. 9: 3005. PMID 30555456 DOI: 10.3389/Fmicb.2018.03005 |
0.497 |
|
| 2018 |
Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Halpin R, Madupu R, Heim A, Kajon AE, Romanowski EG, ... ... Seto D, et al. Author Correction: Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens. Emerging Microbes & Infections. 7: 208. PMID 30532034 DOI: 10.1038/S41426-018-0200-4 |
0.395 |
|
| 2018 |
Ismail AM, Lee JS, Lee JY, Singh G, Dyer DW, Seto D, Chodosh J, Rajaiya J. Adenoviromics: Mining the Human Adenovirus Species D Genome. Frontiers in Microbiology. 9: 2178. PMID 30254627 DOI: 10.3389/Fmicb.2018.02178 |
0.564 |
|
| 2018 |
Lee JY, Lee JS, Materne EC, Rajala R, Ismail AM, Seto D, Dyer DW, Rajaiya J, Chodosh J. Bacterial RecA Protein Promotes Adenoviral Recombination during Infection. Msphere. 3. PMID 29925671 DOI: 10.1128/mSphere.00105-18 |
0.563 |
|
| 2018 |
Ismail AM, Cui T, Dommaraju K, Singh G, Dehghan S, Seto J, Shrivastava S, Fedorova NB, Gupta N, Stockwell TB, Madupu R, Heim A, Kajon AE, Romanowski EG, Kowalski RP, ... ... Seto D, et al. Genomic analysis of a large set of currently-and historically-important human adenovirus pathogens. Emerging Microbes & Infections. 7: 10. PMID 29410402 DOI: 10.1038/S41426-017-0004-Y |
0.595 |
|
| 2017 |
Zhang Q, Jing S, Cheng Z, Yu Z, Dehghan S, Shamsaddini A, Yan Y, Li M, Seto D. Comparative genomic analysis of two emergent human adenovirus type 14 respiratory pathogen isolates in China reveals similar yet divergent genomes. Emerging Microbes & Infections. 6: e92. PMID 29089589 DOI: 10.1038/emi.2017.78 |
0.556 |
|
| 2017 |
Ramke M, Lee JY, Dyer DW, Seto D, Rajaiya J, Chodosh J. The 5'UTR in human adenoviruses: leader diversity in late gene expression. Scientific Reports. 7: 618. PMID 28377580 DOI: 10.1038/S41598-017-00747-Y |
0.34 |
|
| 2016 |
Zhang Q, Dehghan S, Seto D. Pitfalls of restriction enzyme analysis in identifying, characterizing, typing, and naming viral pathogens in the era of whole genome data, as illustrated by HAdV type 55. Virologica Sinica. 31: 448-453. PMID 27822718 DOI: 10.1007/s12250-016-3862-x |
0.452 |
|
| 2016 |
Zeng Z, Zhang J, Jing S, Cheng Z, Bofill-Mas S, Maluquer de Motes C, Hundesa A, Girones R, Seto D, Zhang Q. Genome Sequence of a Cynomolgus Macaque Adenovirus (CynAdV-1) Isolate from a Primate Colony in the United Kingdom. Genome Announcements. 4. PMID 27811094 DOI: 10.1128/genomeA.01193-16 |
0.565 |
|
| 2016 |
Ismail AM, Lee J, Dyer DW, Seto D, Rajaiya J, Chodosh J. Selection pressure in the human adenovirus fiber knob drives cell specificity in epidemic keratoconjunctivitis. Journal of Virology. PMID 27512073 DOI: 10.1128/Jvi.01010-16 |
0.407 |
|
| 2015 |
Singh G, Zhou X, Lee JY, Yousuf MA, Ramke M, Ismail AM, Lee JS, Robinson CM, Seto D, Dyer DW, Jones MS, Rajaiya J, Chodosh J. Recombination of the epsilon determinant and corneal tropism: Human adenovirus species D types 15, 29, 56, and 69. Virology. 485: 452-459. PMID 26343864 DOI: 10.1016/J.Virol.2015.08.018 |
0.468 |
|
| 2015 |
Zhang Q, Seto D. Chimpanzee Adenovirus Vector Ebola Vaccine--Preliminary Report. The New England Journal of Medicine. 373: 775-6. PMID 26287858 DOI: 10.1056/NEJMc1505499#SA1 |
0.292 |
|
| 2015 |
Adriaenssens EM, Edwards R, Nash JH, Mahadevan P, Seto D, Ackermann HW, Lavigne R, Kropinski AM. Integration of genomic and proteomic analyses in the classification of the Siphoviridae family. Virology. 477: 144-54. PMID 25466308 DOI: 10.1016/j.virol.2014.10.016 |
0.464 |
|
| 2014 |
Zhao S, Wan C, Ke C, Seto J, Dehghan S, Zou L, Zhou J, Cheng Z, Jing S, Zeng Z, Zhang J, Wan X, Wu X, Zhao W, Zhu L, ... Seto D, et al. Re-emergent human adenovirus genome type 7d caused an acute respiratory disease outbreak in Southern China after a twenty-one year absence. Scientific Reports. 4: 7365. PMID 25482188 DOI: 10.1038/srep07365 |
0.562 |
|
| 2013 |
Dehghan S, Seto J, Jones MS, Dyer DW, Chodosh J, Seto D. Simian adenovirus type 35 has a recombinant genome comprising human and simian adenovirus sequences, which predicts its potential emergence as a human respiratory pathogen. Virology. 447: 265-73. PMID 24210123 DOI: 10.1016/J.Virol.2013.09.009 |
0.576 |
|
| 2013 |
Seto D, Jones MS, Dyer DW, Chodosh J. Characterizing, typing, and naming human adenovirus type 55 in the era of whole genome data. Journal of Clinical Virology : the Official Publication of the Pan American Society For Clinical Virology. 58: 741-2. PMID 24161575 DOI: 10.1016/J.Jcv.2013.09.025 |
0.477 |
|
| 2013 |
Singh G, Robinson CM, Dehghan S, Jones MS, Dyer DW, Seto D, Chodosh J. Homologous recombination in E3 genes of human adenovirus species D. Journal of Virology. 87: 12481-8. PMID 24027303 DOI: 10.1128/Jvi.01927-13 |
0.488 |
|
| 2013 |
Dehghan S, Seto J, Liu EB, Walsh MP, Dyer DW, Chodosh J, Seto D. Computational analysis of four human adenovirus type 4 genomes reveals molecular evolution through two interspecies recombination events. Virology. 443: 197-207. PMID 23763770 DOI: 10.1016/J.Virol.2013.05.014 |
0.569 |
|
| 2013 |
Robinson CM, Singh G, Lee JY, Dehghan S, Rajaiya J, Liu EB, Yousuf MA, Betensky RA, Jones MS, Dyer DW, Seto D, Chodosh J. Molecular evolution of human adenoviruses. Scientific Reports. 3: 1812. PMID 23657240 DOI: 10.1038/Srep01812 |
0.516 |
|
| 2013 |
Robinson CM, Zhou X, Rajaiya J, Yousuf MA, Singh G, DeSerres JJ, Walsh MP, Wong S, Seto D, Dyer DW, Chodosh J, Jones MS. Predicting the next eye pathogen: analysis of a novel adenovirus. Mbio. 4: e00595-12. PMID 23572555 DOI: 10.1128/Mbio.00595-12 |
0.445 |
|
| 2013 |
Turner D, Reynolds D, Seto D, Mahadevan P. CoreGenes3.5: a webserver for the determination of core genes from sets of viral and small bacterial genomes. Bmc Research Notes. 6: 140. PMID 23566564 DOI: 10.1186/1756-0500-6-140 |
0.46 |
|
| 2013 |
Tang L, An J, Xie Z, Dehghan S, Seto D, Xu W, Ji Y. Genome and bioinformatic analysis of a HAdV-B14p1 virus isolated from a baby with pneumonia in Beijing, China. Plos One. 8: e60345. PMID 23555956 DOI: 10.1371/journal.pone.0060345 |
0.53 |
|
| 2012 |
Zhang Q, Seto D, Cao B, Zhao S, Wan C. Genome sequence of human adenovirus type 55, a re-emergent acute respiratory disease pathogen in China. Journal of Virology. 86: 12441-2. PMID 23087107 DOI: 10.1128/JVI.02225-12 |
0.586 |
|
| 2012 |
Qurei L, Seto D, Salah Z, Azzeh M. A molecular epidemiology survey of respiratory adenoviruses circulating in children residing in Southern Palestine. Plos One. 7: e42732. PMID 22880092 DOI: 10.1371/journal.pone.0042732 |
0.362 |
|
| 2012 |
Zhang Q, Seto D, Zhao S, Zhu L, Zhao W, Wan C. Genome sequence of the first human adenovirus type 14 isolated in China. Journal of Virology. 86: 7019-20. PMID 22628402 DOI: 10.1128/JVI.00814-12 |
0.595 |
|
| 2012 |
Zhou X, Robinson CM, Rajaiya J, Dehghan S, Seto D, Jones MS, Dyer DW, Chodosh J. Analysis of human adenovirus type 19 associated with epidemic keratoconjunctivitis and its reclassification as adenovirus type 64. Investigative Ophthalmology & Visual Science. 53: 2804-11. PMID 22467570 DOI: 10.1167/Iovs.12-9656 |
0.448 |
|
| 2012 |
Liu EB, Wadford DA, Seto J, Vu M, Hudson NR, Thrasher L, Torres S, Dyer DW, Chodosh J, Seto D, Jones MS. Computational and serologic analysis of novel and known viruses in species human adenovirus D in which serology and genomics do not correlate. Plos One. 7: e33212. PMID 22427992 DOI: 10.1371/Journal.Pone.0033212 |
0.49 |
|
| 2012 |
Zhang Q, Zhang X, Wu H, Seto D, Zhang HJ, Chen Z, Wan C, Zheng BJ. Parental LTRs are important in a construct of a stable and efficient replication-competent infectious molecular clone of HIV-1 CRF08_BC. Plos One. 7: e31233. PMID 22363589 DOI: 10.1371/journal.pone.0031233 |
0.338 |
|
| 2012 |
Singh G, Robinson CM, Dehghan S, Schmidt T, Seto D, Jones MS, Dyer DW, Chodosh J. Overreliance on the hexon gene, leading to misclassification of human adenoviruses. Journal of Virology. 86: 4693-5. PMID 22301156 DOI: 10.1128/Jvi.06969-11 |
0.547 |
|
| 2012 |
Dehghan S, Liu EB, Seto J, Torres SF, Hudson NR, Kajon AE, Metzgar D, Dyer DW, Chodosh J, Jones MS, Seto D. Five genome sequences of subspecies B1 human adenoviruses associated with acute respiratory disease. Journal of Virology. 86: 635-6. PMID 22158846 DOI: 10.1128/Jvi.06593-11 |
0.542 |
|
| 2011 |
Dehghan S, Seto J, Hudson NR, Robinson CM, Jones MS, Dyer DW, Chodosh J, Seto D. Complete genome sequence of human adenovirus prototype 17. Journal of Virology. 85: 11540-1. PMID 21980031 DOI: 10.1128/Jvi.06051-11 |
0.566 |
|
| 2011 |
Liu EB, Ferreyra L, Fischer SL, Pavan JV, Nates SV, Hudson NR, Tirado D, Dyer DW, Chodosh J, Seto D, Jones MS. Genetic analysis of a novel human adenovirus with a serologically unique hexon and a recombinant fiber gene. Plos One. 6: e24491. PMID 21915339 DOI: 10.1371/Journal.Pone.0024491 |
0.503 |
|
| 2011 |
Akula N, Baranova A, Seto D, Solka J, Nalls MA, Singleton A, Ferrucci L, Tanaka T, Bandinelli S, Cho YS, Kim YJ, Lee JY, Han BG, et al. A network-based approach to prioritize results from genome-wide association studies. Plos One. 6: e24220. PMID 21915301 DOI: 10.1371/Journal.Pone.0024220 |
0.3 |
|
| 2011 |
Walsh MP, Seto J, Liu EB, Dehghan S, Hudson NR, Lukashev AN, Ivanova O, Chodosh J, Dyer DW, Jones MS, Seto D. Computational analysis of two species C human adenoviruses provides evidence of a novel virus. Journal of Clinical Microbiology. 49: 3482-90. PMID 21849694 DOI: 10.1128/Jcm.00156-11 |
0.419 |
|
| 2011 |
Robinson CM, Seto D, Jones MS, Dyer DW, Chodosh J. Molecular evolution of human species D adenoviruses. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 11: 1208-17. PMID 21570490 DOI: 10.1016/J.Meegid.2011.04.031 |
0.483 |
|
| 2011 |
Seto D, Chodosh J, Brister JR, Jones MS. Using the whole-genome sequence to characterize and name human adenoviruses. Journal of Virology. 85: 5701-2. PMID 21450823 DOI: 10.1128/Jvi.00354-11 |
0.559 |
|
| 2011 |
Robinson CM, Singh G, Henquell C, Walsh MP, Peigue-Lafeuille H, Seto D, Jones MS, Dyer DW, Chodosh J. Computational analysis and identification of an emergent human adenovirus pathogen implicated in a respiratory fatality. Virology. 409: 141-7. PMID 21056888 DOI: 10.1016/J.Virol.2010.10.020 |
0.477 |
|
| 2011 |
Mahadevan P, Seto D. Taxonomic parsing of bacteriophages using core genes and in silico proteome-based CGUG and applications to small bacterial genomes. Advances in Experimental Medicine and Biology. 680: 379-85. PMID 20865522 DOI: 10.1007/978-1-4419-5913-3_43 |
0.482 |
|
| 2010 |
Torres S, Chodosh J, Seto D, Jones MS. The revolution in viral genomics as exemplified by the bioinformatic analysis of human adenoviruses. Viruses. 2: 1367-81. PMID 21994684 DOI: 10.3390/V2071367 |
0.544 |
|
| 2010 |
Seto D. Viral genomics and bioinformatics. Viruses. 2: 2587-93. PMID 21994632 DOI: 10.3390/v2122587 |
0.487 |
|
| 2010 |
Brister JR, Bao Y, Kuiken C, Lefkowitz EJ, Le Mercier P, Leplae R, Madupu R, Scheuermann RH, Schobel S, Seto D, Shrivastava S, Sterk P, Zeng Q, Klimke W, Tatusova T. Towards Viral Genome Annotation Standards, Report from the 2010 NCBI Annotation Workshop. Viruses. 2: 2258-68. PMID 21994619 DOI: 10.3390/V2102258 |
0.517 |
|
| 2010 |
Seto J, Walsh MP, Mahadevan P, Zhang Q, Seto D. Applying genomic and bioinformatic resources to human adenovirus genomes for use in vaccine development and for applications in vector development for gene delivery. Viruses. 2: 1-26. PMID 21994597 DOI: 10.3390/v2010001 |
0.487 |
|
| 2010 |
Seto J, Walsh MP, Metzgar D, Seto D. Computational analysis of adenovirus serotype 5 (HAdV-C5) from an HAdV coinfection shows genome stability after 45 years of circulation. Virology. 404: 180-6. PMID 20627349 DOI: 10.1016/j.virol.2010.05.010 |
0.518 |
|
| 2010 |
Walsh MP, Seto J, Tirado D, Chodosh J, Schnurr D, Seto D, Jones MS. Computational analysis of human adenovirus serotype 18. Virology. 404: 284-92. PMID 20542532 DOI: 10.1016/J.Virol.2010.05.013 |
0.562 |
|
| 2010 |
Mahadevan P, Seto D. Rapid pair-wise synteny analysis of large bacterial genomes using web-based GeneOrder4.0. Bmc Research Notes. 3: 41. PMID 20178631 DOI: 10.1186/1756-0500-3-41 |
0.397 |
|
| 2010 |
Arnold J, Jánoska M, Kajon AE, Metzgar D, Hudson NR, Torres S, Harrach B, Seto D, Chodosh J, Jones MS. Genomic characterization of human adenovirus 36, a putative obesity agent. Virus Research. 149: 152-61. PMID 20109503 DOI: 10.1016/J.Virusres.2010.01.011 |
0.511 |
|
| 2010 |
Walsh MP, Seto J, Jones MS, Chodosh J, Xu W, Seto D. Computational analysis identifies human adenovirus type 55 as a re-emergent acute respiratory disease pathogen. Journal of Clinical Microbiology. 48: 991-3. PMID 20042633 DOI: 10.1128/Jcm.01694-09 |
0.532 |
|
| 2009 |
Mahadevan P, King JF, Seto D. Data mining pathogen genomes using GeneOrder and CoreGenes and CGUG: Gene order, synteny and in silico proteomes International Journal of Computational Biology and Drug Design. 2: 100-114. PMID 20054988 DOI: 10.1504/IJCBDD.2009.027586 |
0.502 |
|
| 2009 |
Mahadevan P, Seto J, Tibbetts C, Seto D. Natural variants of human adenovirus type 3 provide evidence for relative genome stability across time and geographic space. Virology. 397: 113-8. PMID 19932910 DOI: 10.1016/j.virol.2009.10.052 |
0.547 |
|
| 2009 |
Lavigne R, Darius P, Summer EJ, Seto D, Mahadevan P, Nilsson AS, Ackermann HW, Kropinski AM. Classification of Myoviridae bacteriophages using protein sequence similarity. Bmc Microbiology. 9: 224. PMID 19857251 DOI: 10.1186/1471-2180-9-224 |
0.452 |
|
| 2009 |
Mahadevan P, King JF, Seto D. CGUG: in silico proteome and genome parsing tool for the determination of "core" and unique genes in the analysis of genomes up to ca. 1.9 Mb. Bmc Research Notes. 2: 168. PMID 19706165 DOI: 10.1186/1756-0500-2-168 |
0.498 |
|
| 2009 |
Robinson CM, Rajaiya J, Walsh MP, Seto D, Dyer DW, Jones MS, Chodosh J. Computational analysis of human adenovirus type 22 provides evidence for recombination among species D human adenoviruses in the penton base gene. Journal of Virology. 83: 8980-5. PMID 19553309 DOI: 10.1128/Jvi.00786-09 |
0.498 |
|
| 2009 |
Walsh MP, Chintakuntlawar A, Robinson CM, Madisch I, Harrach B, Hudson NR, Schnurr D, Heim A, Chodosh J, Seto D, Jones MS. Evidence of molecular evolution driven by recombination events influencing tropism in a novel human adenovirus that causes epidemic keratoconjunctivitis. Plos One. 4: e5635. PMID 19492050 DOI: 10.1371/Journal.Pone.0005635 |
0.464 |
|
| 2009 |
Seto J, Walsh MP, Mahadevan P, Purkayastha A, Clark JM, Tibbetts C, Seto D. Genomic and bioinformatics analyses of HAdV-14p, reference strain of a re-emerging respiratory pathogen and analysis of B1/B2. Virus Research. 143: 94-105. PMID 19463726 DOI: 10.1016/j.virusres.2009.03.011 |
0.46 |
|
| 2009 |
Zhang Q, Su X, Seto D, Zheng BJ, Tian X, Sheng H, Li H, Wang Y, Zhou R. Construction and characterization of a replication-competent human adenovirus type 3-based vector as a live-vaccine candidate and a viral delivery vector. Vaccine. 27: 1145-53. PMID 19146906 DOI: 10.1016/j.vaccine.2008.12.039 |
0.461 |
|
| 2009 |
Kropinski AM, Borodovsky M, Carver TJ, Cerdeño-Tárraga AM, Darling A, Lomsadze A, Mahadevan P, Stothard P, Seto D, Van Domselaar G, Wishart DS. In silico identification of genes in bacteriophage DNA. Methods in Molecular Biology (Clifton, N.J.). 502: 57-89. PMID 19082552 DOI: 10.1007/978-1-60327-565-1_6 |
0.47 |
|
| 2008 |
Lavigne R, Seto D, Mahadevan P, Ackermann HW, Kropinski AM. Unifying classical and molecular taxonomic classification: analysis of the Podoviridae using BLASTP-based tools Research in Microbiology. 159: 406-414. PMID 18555669 DOI: 10.1016/j.resmic.2008.03.005 |
0.246 |
|
| 2006 |
Vora GJ, Lin B, Gratwick K, Meador C, Hansen C, Tibbetts C, Stenger DA, Irvine M, Seto D, Purkayastha A, Freed NE, Gibson MG, Russell K, Metzgar D. Co-infections of adenovirus species in previously vaccinated patients. Emerging Infectious Diseases. 12: 921-30. PMID 16707047 |
0.364 |
|
| 2006 |
Lin B, Wang Z, Vora GJ, Thornton JA, Schnur JM, Thach DC, Blaney KM, Ligler AG, Malanoski AP, Santiago J, Walter EA, Agan BK, Metzgar D, Seto D, Daum LT, et al. Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays. Genome Research. 16: 527-35. PMID 16481660 DOI: 10.1101/gr.4337206 |
0.399 |
|
| 2005 |
Purkayastha A, Su J, McGraw J, Ditty SE, Hadfield TL, Seto J, Russell KL, Tibbetts C, Seto D. Genomic and bioinformatics analyses of HAdV-4vac and HAdV-7vac, two human adenovirus (HAdV) strains that constituted original prophylaxis against HAdV-related acute respiratory disease, a reemerging epidemic disease. Journal of Clinical Microbiology. 43: 3083-94. PMID 16000418 DOI: 10.1128/JCM.43.7.3083-3094.2005 |
0.5 |
|
| 2005 |
Purkayastha A, Ditty SE, Su J, McGraw J, Hadfield TL, Tibbetts C, Seto D. Genomic and bioinformatics analysis of HAdV-4, a human adenovirus causing acute respiratory disease: implications for gene therapy and vaccine vector development. Journal of Virology. 79: 2559-72. PMID 15681456 DOI: 10.1128/JVI.79.4.2559-2572.2005 |
0.484 |
|
| 2005 |
Purkayastha A, Su J, Carlisle S, Tibbetts C, Seto D. Genomic and bioinformatics analysis of HAdV-7, a human adenovirus of species B1 that causes acute respiratory disease: implications for vector development in human gene therapy. Virology. 332: 114-29. PMID 15661145 DOI: 10.1016/j.virol.2004.10.041 |
0.603 |
|
| 2004 |
Lauer KP, Llorente I, Blair E, Seto J, Krasnov V, Purkayastha A, Ditty SE, Hadfield TL, Buck C, Tibbetts C, Seto D. Natural variation among human adenoviruses: genome sequence and annotation of human adenovirus serotype 1. The Journal of General Virology. 85: 2615-2625. PMID 15302955 DOI: 10.1099/vir.0.80118-0 |
0.52 |
|
| 2004 |
Celamkoti S, Kundeti S, Purkayastha A, Mazumder R, Buck C, Seto D. GeneOrder3.0: software for comparing the order of genes in pairs of small bacterial genomes. Bmc Bioinformatics. 5: 52. PMID 15128433 DOI: 10.1186/1471-2105-5-52 |
0.518 |
|
| 2002 |
Zafar N, Mazumder R, Seto D. CoreGenes: a computational tool for identifying and cataloging "core" genes in a set of small genomes. Bmc Bioinformatics. 3: 12. PMID 11972896 DOI: 10.1186/1471-2105-3-12 |
0.481 |
|
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