Philbert S. Tsai - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Imaging

41 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2017 Mateo C, Knutsen PM, Tsai PS, Shih AY, Kleinfeld D. Entrainment of Arteriole Vasomotor Fluctuations by Neural Activity Is a Basis of Blood-Oxygenation-Level-Dependent "Resting-State" Connectivity. Neuron. PMID 29107517 DOI: 10.1016/j.neuron.2017.10.012  1
2017 Báez-Yánez MG, Ehses P, Mirkes C, Tsai PS, Kleinfeld D, Scheffler K. The impact of vessel size, orientation and intravascular contribution on the neurovascular fingerprint of BOLD bSSFP fMRI. Neuroimage. PMID 28890417 DOI: 10.1016/j.neuroimage.2017.09.015  1
2017 Schmid F, Tsai PS, Kleinfeld D, Jenny P, Weber B. Depth-dependent flow and pressure characteristics in cortical microvascular networks. Plos Computational Biology. 13: e1005392. PMID 28196095 DOI: 10.1371/journal.pcbi.1005392  1
2015 Tsai PS, Mateo C, Field JJ, Schaffer CB, Anderson ME, Kleinfeld D. Ultra-large field-of-view two-photon microscopy. Optics Express. 23: 13833-47. PMID 26072755  1
2015 Shih AY, Rühlmann C, Blinder P, Devor A, Drew PJ, Friedman B, Knutsen PM, Lyden PD, Matéo C, Mellander L, Nishimura N, Schaffer CB, Tsai PS, Kleinfeld D. Robust and fragile aspects of cortical blood flow in relation to the underlying angioarchitecture. Microcirculation (New York, N.Y. : 1994). 22: 204-18. PMID 25705966 DOI: 10.1111/micc.12195  1
2015 Tsai PS, Mateo C, Field JJ, Schaffer CB, Anderson ME, Kleinfeld D. Ultra-large field-of-view two-photon microscopy Optics Express. 23: 13833-13847. DOI: 10.1364/OE.23.013833  1
2013 Jeong DC, Tsai PS, Kleinfeld D. All-optical osteotomy to create windows for transcranial imaging in mice. Optics Express. 21: 23160-8. PMID 24104230 DOI: 10.1364/OE.21.023160  1
2013 Blinder P, Tsai PS, Kaufhold JP, Knutsen PM, Suhl H, Kleinfeld D. The cortical angiome: an interconnected vascular network with noncolumnar patterns of blood flow. Nature Neuroscience. 16: 889-97. PMID 23749145 DOI: 10.1038/nn.3426  1
2013 Tsai PS, Blinder P, Squier JA, Kleinfeld D. All-optical in situ histology of brain tissue with femtosecond laser pulses. Cold Spring Harbor Protocols. 2013: 327-34. PMID 23547156 DOI: 10.1101/pdb.prot073858  1
2013 Shih AY, Blinder P, Tsai PS, Friedman B, Stanley G, Lyden PD, Kleinfeld D. The smallest stroke: occlusion of one penetrating vessel leads to infarction and a cognitive deficit. Nature Neuroscience. 16: 55-63. PMID 23242312 DOI: 10.1038/nn.3278  1
2012 Kaufhold JP, Tsai PS, Blinder P, Kleinfeld D. Vectorization of optically sectioned brain microvasculature: learning aids completion of vascular graphs by connecting gaps and deleting open-ended segments. Medical Image Analysis. 16: 1241-58. PMID 22854035 DOI: 10.1016/j.media.2012.06.004  1
2012 Shih AY, Mateo C, Drew PJ, Tsai PS, Kleinfeld D. A polished and reinforced thinned-skull window for long-term imaging of the mouse brain. Journal of Visualized Experiments : Jove. PMID 22433225 DOI: 10.3791/3742  1
2012 Jeong DC, Tsai PS, Kleinfeld D. Prospect for feedback guided surgery with ultra-short pulsed laser light. Current Opinion in Neurobiology. 22: 24-33. PMID 22088392 DOI: 10.1016/j.conb.2011.10.020  1
2011 Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, ... ... Tsai PS, et al. Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 16125-38. PMID 22072665 DOI: 10.1523/JNEUROSCI.4077-11.2011  1
2011 Kleinfeld D, Blinder P, Drew PJ, Driscoll JD, Muller A, Tsai PS, Shih AY. A guide to delineate the logic of neurovascular signaling in the brain. Frontiers in Neuroenergetics. 3: 1. PMID 21559095 DOI: 10.3389/fnene.2011.00001  1
2010 Drew PJ, Shih AY, Driscoll JD, Knutsen PM, Blinder P, Davalos D, Akassoglou K, Tsai PS, Kleinfeld D. Chronic optical access through a polished and reinforced thinned skull. Nature Methods. 7: 981-4. PMID 20966916 DOI: 10.1038/nmeth.1530  1
2010 Vitek DN, Adams DE, Johnson A, Tsai PS, Backus S, Durfee CG, Kleinfeld D, Squier JA. Temporally focused femtosecond laser pulses for low numerical aperture micromachining through optically transparent materials. Optics Express. 18: 18086-94. PMID 20721196 DOI: 10.1364/OE.18.018086  1
2010 Devor A, Shih AY, Tsai PS, Blinder P, Tian P, Teng IC, Kleinfeld D. Two-photon laser scanning microscopy as a tool to study cortical vasodynamics under normal and ischemic conditions Imaging the Brain With Optical Methods. 245-261. DOI: 10.1007/978-1-4419-0452-2_11  1
2009 Tsai PS, Kaufhold JP, Blinder P, Friedman B, Drew PJ, Karten HJ, Lyden PD, Kleinfeld D. Correlations of neuronal and microvascular densities in murine cortex revealed by direct counting and colocalization of nuclei and vessels. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 29: 14553-70. PMID 19923289 DOI: 10.1523/JNEUROSCI.3287-09.2009  1
2009 Friedman B, Schachtrup C, Tsai PS, Shih AY, Akassoglou K, Kleinfeld D, Lyden PD. Acute vascular disruption and aquaporin 4 loss after stroke. Stroke; a Journal of Cerebral Circulation. 40: 2182-90. PMID 19372455 DOI: 10.1161/STROKEAHA.108.523720  1
2009 Tsai PS, Blinder P, Migliori BJ, Neev J, Jin Y, Squier JA, Kleinfeld D. Plasma-mediated ablation: an optical tool for submicrometer surgery on neuronal and vascular systems. Current Opinion in Biotechnology. 20: 90-9. PMID 19269159 DOI: 10.1016/j.copbio.2009.02.003  1
2009 Shih AY, Friedman B, Drew PJ, Tsai PS, Lyden PD, Kleinfeld D. Active dilation of penetrating arterioles restores red blood cell flux to penumbral neocortex after focal stroke. Journal of Cerebral Blood Flow and Metabolism : Official Journal of the International Society of Cerebral Blood Flow and Metabolism. 29: 738-51. PMID 19174826 DOI: 10.1038/jcbfm.2008.166  1
2009 Tsai PS, Blinder P, Drew P, Driscoll J, Jeong D, Kaufhold JP, Shih A, Valmianski I, Kleinfeld D. Topology, dynamics, and control in cortical blood flow elucidated with optical techniques Proceedings of Spie - the International Society For Optical Engineering. 7397. DOI: 10.1117/12.829588  1
2008 Tsai PS, Blinder P, Migliori B, Kleinfeld D. Ultra-short laser pulses as a tool to measure as well as perturb neurovascular activity in the rodent brain Optics Infobase Conference Papers 1
2007 Tsai PS, Migliori B, Campbell K, Kim TN, Kam Z, Groisman A, Kleinfeld D. Spherical aberration correction in nonlinear microscopy and optical ablation using a transparent deformable membrane Applied Physics Letters. 91. DOI: 10.1063/1.2804014  1
2006 Nguyen QT, Tsai PS, Kleinfeld D. MPScope: a versatile software suite for multiphoton microscopy. Journal of Neuroscience Methods. 156: 351-9. PMID 16621010 DOI: 10.1016/j.jneumeth.2006.03.001  1
2006 Nishimura N, Schaffer CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Targeted insult to subsurface cortical blood vessels using ultrashort laser pulses: three models of stroke. Nature Methods. 3: 99-108. PMID 16432519 DOI: 10.1038/nmeth844  1
2006 Schaffer CB, Friedman B, Nishimura N, Schroeder LF, Tsai PS, Ebner FF, Lyden PD, Kleinfeld D. Two-photon imaging of cortical surface microvessels reveals a robust redistribution in blood flow after vascular occlusion. Plos Biology. 4: e22. PMID 16379497 DOI: 10.1371/journal.pbio.0040022  1
2006 Clay GO, Millard AC, Schaffer CB, Aus-der-Au J, Tsai PS, Squier JA, Kleinfeld D. Spectroscopy of third-harmonic generation: Evidence for resonances in model compounds and ligated hemoglobin Journal of the Optical Society of America B: Optical Physics. 23: 932-950. DOI: 10.1364/JOSAB.23.000932  1
2006 Squier JA, Tsai PS, Kleinfeld D. All optical histology using femtosecond laser pulses Optics Infobase Conference Papers 1
2006 Squier JA, Tsai PS, Kleinfeld D. All optical histology using femtosecond laser pulses Optics Infobase Conference Papers 1
2005 Nishimura N, Schaffera CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Two-photon imaging of cortical microvascular blood flow in response to single vessel occlusion Optics Infobase Conference Papers 1
2005 Tsai PS, Kima TN, Campbella K, Groismana A, Kamc Z, Kleinfeld D. Spherical aberration correction in deep multi-photon imaging Optics Infobase Conference Papers 1
2004 Nishimura N, Schaffer CB, Friedman B, Tsai PS, Lyden PD, Kleinfeld D. Targeted disruption of deep-lying neocortical microvessels in rat using ultrashort laser pulses Proceedings of Spie - the International Society For Optical Engineering. 5340: 179-187. DOI: 10.1117/12.555404  1
2004 Ifarraguerri A, Thompson B, Tsai PS, Friedman B, Schaffer CB, Lev-Ram V, Tsien RY, Squier JA, Kleinfeld D. Quantitative analysis of volumetric TPLSM data 2004 2nd Ieee International Symposium On Biomedical Imaging: Macro to Nano. 1: 804-807.  1
2004 Tsai PS, Friedman B, Squier J, Kleinfeld D. Ultrashort pulsed laser light Optics and Photonics News. 15: 24-29.  1
2003 Tsai PS, Friedman B, Ifarraguerri AI, Thompson BD, Lev-Ram V, Schaffer CB, Xiong Q, Tsien RY, Squier JA, Kleinfeld D. All-optical histology using ultrashort laser pulses. Neuron. 39: 27-41. PMID 12848930 DOI: 10.1016/S0896-6273(03)00370-2  1
2003 Schaffer CB, Tsai PS, Nishimura N, Schroeder LF, Friedman B, Lyden PD, Ebner FF, Kleinfeld D. All optical thrombotic stroke model for near-surface blood vessels in rat: Focal illumination of exogenous photosensitizers combined with real-time two-photon imaging Proceedings of Spie - the International Society For Optical Engineering. 4978: 222-231. DOI: 10.1117/12.484208  1
2003 Schaffer CB, Ebner FF, Nishimura N, Friedman B, Tsai PS, Schroeder LF, Lyden PD, Kleinfeld D. Real-time two-photon fluorescence microscopy of blood flow dynamics following photothrombotic stroke in rat neocortex Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-Leos. 1: 307-308.  1
2003 Tsai PS, Friedman B, Ifarraguerri AI, Thompson BD, Lev-Ram V, Schaffer CB, Xiong Q, Tsien RY, Squier JA, Kleinfeld D. All optical histology: Serial ablation and multiphoton imaging of neuronal tissue with femtosecond laser pulses Conference Proceedings - Lasers and Electro-Optics Society Annual Meeting-Leos. 2: 485-486.  1
2003 Tsai PS, Friedman B, Lev-Ram V, Xiong Q, Tsien RY, Kleinfeld D, Ifarraguerri AI, Thompson BD, Squier JA. All optical histology of brain tissue: Serial ablation and multiphoton imaging with femtosecond laser pulses Osa Trends in Optics and Photonics Series. 88: 204-207.  1
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