James M. McFarland, Ph.D. - Publications

Affiliations: 
Biology University of Maryland, College Park, College Park, MD 
Area:
Computation, vision
Website:
http://neurotheory.umd.edu/people/james

11/63 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2016 McFarland JM, Cumming BG, Butts DA. Variability and Correlations in Primary Visual Cortical Neurons Driven by Fixational Eye Movements. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 6225-41. PMID 27277801 DOI: 10.1523/JNEUROSCI.4660-15.2016  1
2016 Cui Y, Liu LD, McFarland JM, Pack CC, Butts DA. Inferring Cortical Variability from Local Field Potentials. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 4121-35. PMID 27053217 DOI: 10.1523/JNEUROSCI.2502-15.2016  1
2015 McFarland JM, Bondy AG, Saunders RC, Cumming BG, Butts DA. Saccadic modulation of stimulus processing in primary visual cortex. Nature Communications. 6: 8110. PMID 26370359 DOI: 10.1038/ncomms9110  1
2014 McFarland JM, Bondy AG, Cumming BG, Butts DA. High-resolution eye tracking using V1 neuron activity. Nature Communications. 5: 4605. PMID 25197783 DOI: 10.1038/ncomms5605  1
2013 McFarland JM, Cui Y, Butts DA. Inferring nonlinear neuronal computation based on physiologically plausible inputs. Plos Computational Biology. 9: e1003143. PMID 23874185 DOI: 10.1371/journal.pcbi.1003143  1
2012 Hahn TT, McFarland JM, Berberich S, Sakmann B, Mehta MR. Spontaneous persistent activity in entorhinal cortex modulates cortico-hippocampal interaction in vivo. Nature Neuroscience. 15: 1531-8. PMID 23042081 DOI: 10.1038/nn.3236  1
2012 Resnik E, McFarland JM, Sprengel R, Sakmann B, Mehta MR. The effects of GluA1 deletion on the hippocampal population code for position. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 32: 8952-68. PMID 22745495 DOI: 10.1523/JNEUROSCI.6460-11.2012  1
2011 McFarland JM, Hahn TT, Mehta MR. Explicit-duration hidden Markov model inference of UP-DOWN states from continuous signals. Plos One. 6: e21606. PMID 21738730 DOI: 10.1371/journal.pone.0021606  1
2011 Chen Z, Resnik E, McFarland JM, Sakmann B, Mehta MR. Speed controls the amplitude and timing of the hippocampal gamma rhythm. Plos One. 6: e21408. PMID 21731735 DOI: 10.1371/journal.pone.0021408  1
2008 Ahmed OJ, McFarland J, Kumar A. Reactivation in ventral striatum during hippocampal ripples: evidence for the binding of reward and spatial memories? The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 9895-7. PMID 18829947 DOI: 10.1523/JNEUROSCI.3778-08.2008  1
2007 McFarland J, Soechting JF. Factors influencing the radial-tangential illusion in haptic perception. Experimental Brain Research. 178: 216-27. PMID 17053907 DOI: 10.1007/s00221-006-0727-9  1
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2019 Ghandi M, Huang FW, Jané-Valbuena J, Kryukov GV, Lo CC, McDonald ER, Barretina J, Gelfand ET, Bielski CM, Li H, Hu K, Andreev-Drakhlin AY, Kim J, Hess JM, Haas BJ, ... ... McFarland JM, et al. Next-generation characterization of the Cancer Cell Line Encyclopedia. Nature. PMID 31068700 DOI: 10.1038/s41586-019-1186-3  0.01
2019 Chan EM, Shibue T, McFarland JM, Gaeta B, Ghandi M, Dumont N, Gonzalez A, McPartlan JS, Li T, Zhang Y, Bin Liu J, Lazaro JB, Gu P, Piett CG, Apffel A, et al. WRN helicase is a synthetic lethal target in microsatellite unstable cancers. Nature. PMID 30971823 DOI: 10.1038/s41586-019-1102-x  0.01
2019 Price C, Gill S, Ho ZV, Davidson SM, Merkel E, McFarland JM, Leung L, Tang A, Kost-Alimova M, Tsherniak A, Jonas O, Vazquez F, Hahn WC. Genome-wide interrogation of human cancers identifies EGLN1 dependency in clear cell ovarian cancers. Cancer Research. PMID 30898838 DOI: 10.1158/0008-5472.CAN-18-2674  0.01
2018 Stull JW, Shelby JA, Bonnett BN, Block G, Budsberg SC, Dean RS, Dicks MR, Forsgren BW, Golab GC, Hamil JA, Kass PH, King LJ, Lund EM, Maddux ML, McFarland JM, et al. Barriers and next steps to providing a spectrum of effective health care to companion animals. Journal of the American Veterinary Medical Association. 253: 1386-1389. PMID 30451620 DOI: 10.2460/javma.253.11.1386  0.01
2018 McFarland JM, Ho ZV, Kugener G, Dempster JM, Montgomery PG, Bryan JG, Krill-Burger JM, Green TM, Vazquez F, Boehm JS, Golub TR, Hahn WC, Root DE, Tsherniak A. Improved estimation of cancer dependencies from large-scale RNAi screens using model-based normalization and data integration. Nature Communications. 9: 4610. PMID 30389920 DOI: 10.1038/s41467-018-06916-5  0.01
2018 Giacomelli AO, Yang X, Lintner RE, McFarland JM, Duby M, Kim J, Howard TP, Takeda DY, Ly SH, Kim E, Gannon HS, Hurhula B, Sharpe T, Goodale A, Fritchman B, et al. Mutational processes shape the landscape of TP53 mutations in human cancer. Nature Genetics. PMID 30224644 DOI: 10.1038/s41588-018-0204-y  0.01
2017 Drake PM, Carlson A, McFarland JM, Banas S, Barfield RM, Zmolek W, Kim YC, Huang BCB, Kudirka R, Rabuka D. CAT-02-106, a site-specifically conjugated anti-CD22 antibody bearing an MDR1-resistant maytansine payload yields excellent efficacy and safety in preclinical models. Molecular Cancer Therapeutics. PMID 29142069 DOI: 10.1158/1535-7163.MCT-17-0776  0.01
2017 Meyers RM, Bryan JG, McFarland JM, Weir BA, Sizemore AE, Xu H, Dharia NV, Montgomery PG, Cowley GS, Pantel S, Goodale A, Ali LD, Jiang G, Lubonja R, Harrington WF, et al. Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells. Nature Genetics. PMID 29083409 DOI: 10.1038/ng.3984  0.01
2017 Ben-David U, Ha G, Tseng YY, Greenwald NF, Oh C, Shih J, McFarland JM, Wong B, Boehm JS, Beroukhim R, Golub TR. Patient-derived xenografts undergo mouse-specific tumor evolution. Nature Genetics. PMID 28991255 DOI: 10.1038/ng.3967  0.01
2016 Kudirka RA, Barfield RM, McFarland JM, Drake PM, Carlson A, Bañas S, Zmolek W, Garofalo AW, Rabuka D. Site-Specific Tandem Knoevenagel Condensation-Michael Addition To Generate Antibody-Drug Conjugates. Acs Medicinal Chemistry Letters. 7: 994-998. PMID 27882197 DOI: 10.1021/acsmedchemlett.6b00253  0.01
2015 Bradshaw JM, McFarland JM, Paavilainen VO, Bisconte A, Tam D, Phan VT, Romanov S, Finkle D, Shu J, Patel V, Ton T, Li X, Loughhead DG, Nunn PA, Karr DE, et al. Prolonged and tunable residence time using reversible covalent kinase inhibitors. Nature Chemical Biology. 11: 525-31. PMID 26006010 DOI: 10.1038/nchembio.1817  0.01
2015 McFarland JM. Variance decomposition for statistical quantities of interest Journal of Aerospace Information Systems. 12: 204-218. DOI: 10.2514/1.I010261  0.01
2015 Rominger RL, McFarland JM, Jeitler JR, Thompson JS, Atwood JD. Facile intermolecular phosphine ligand exchange reactions between square planar iridium and platinum centers Journal of Coordination Chemistry. 31: 7-18. DOI: 10.1080/00958979408022540  0.01
2015 McFarland JM, Bhamidipati V, McClung RC, James MA, Watton JD, Hill MR, Ball DL. Probabilistic modeling of bulk residual stresses 56th Aiaa/Asce/Ahs/Asc Structures, Structural Dynamics, and Materials Conference 0.01
2014 Bredbenner TL, Eliason TD, Francis WL, McFarland JM, Merkle AC, Nicolella DP. Development and validation of a statistical shape modeling-based finite element model of the cervical spine under low-level multiple direction loading conditions. Frontiers in Bioengineering and Biotechnology. 2: 58. PMID 25506051 DOI: 10.3389/fbioe.2014.00058  0.01
2014 Liang SI, McFarland JM, Rabuka D, Gartner ZJ. A modular approach for assembling aldehyde-tagged proteins on DNA scaffolds. Journal of the American Chemical Society. 136: 10850-3. PMID 25029632 DOI: 10.1021/ja504711n  0.01
2014 McFarland JM, Bichon BJ, Rihay DS. A probabilistic treatment of multiple uncertainty types: NASA UQ challenge 16th Aiaa Non-Deterministic Approaches Conference 0.01
2013 McFarland JM, Kumarasamy K, Brobst BR, Hais A, Schmitz DM. Protecting groundwater resources at biosolids recycling sites Journal of Environmental Quality. 42: 660-665. DOI: 10.2134/jeq2012.0462  0.01
2013 Ruess RW, Anderson MD, Mcfarland JM, Kielland K, Olson K, Taylor DL. Ecosystem-level consequences of symbiont partnerships in an N-fixing shrub from interior Alaskan floodplains Ecological Monographs. 83: 177-194. DOI: 10.1890/12-0782.1  0.01
2013 Bichon BJ, Eldred MS, Mahadevan S, McFarland JM. Efficient global surrogate modeling for reliability-based design optimization Journal of Mechanical Design, Transactions of the Asme. 135. DOI: 10.1115/1.4022999  0.01
2013 Bichon BJ, McFarland JM, Mahadevan S. Efficient construction of Gaussian process surrogate models for component and system reliability estimation Safety, Reliability, Risk and Life-Cycle Performance of Structures and Infrastructures - Proceedings of the 11th International Conference On Structural Safety and Reliability, Icossar 2013. 3217-3224.  0.01
2013 Walker JD, Chocron S, Anderson CE, Riegel JP, Riha DS, McFarland JM, Moore M, Wilden G, Murphy M, Abbott B. Survivability modeling in Darpa's Adaptive Vehicle Make (AVM) program Proceedings - 27th International Symposium On Ballistics, Ballistics 2013. 2: 967-979.  0.01
2012 Serafimova IM, Pufall MA, Krishnan S, Duda K, Cohen MS, Maglathlin RL, McFarland JM, Miller RM, Frödin M, Taunton J. Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles. Nature Chemical Biology. 8: 471-6. PMID 22466421 DOI: 10.1038/nchembio.925  0.01
2012 McFarland JM, Musgrove GO, Chang SY, Ransom DL. Calibration of gas turbine blade temperature predictions using surrogate models Proceedings of the Asme Turbo Expo. 8: 2263-2272. DOI: 10.1115/GT2012-69601  0.01
2012 McFarland JM, Morris AP, Ferrill DA. Stress inversion using slip tendency Computers and Geosciences. 41: 40-46. DOI: 10.1016/j.cageo.2011.08.004  0.01
2011 Bichon BJ, McFarland JM. Inverse reliability analysis with EGRA Collection of Technical Papers - Aiaa/Asme/Asce/Ahs/Asc Structures, Structural Dynamics and Materials Conference. DOI: 10.2514/6.2011-1908  0.01
2011 Bichon BJ, McFarland JM, Mahadevan S. Efficient surrogate models for reliability analysis of systems with multiple failure modes Reliability Engineering and System Safety. 96: 1386-1395. DOI: 10.1016/j.ress.2011.05.008  0.01
2010 Geml J, Laursen GA, Herriott IC, McFarland JM, Booth MG, Lennon N, Chad Nusbaum H, Lee Taylor D. Phylogenetic and ecological analyses of soil and sporocarp DNA sequences reveal high diversity and strong habitat partitioning in the boreal ectomycorrhizal genus Russula (Russulales; Basidiomycota). The New Phytologist. 187: 494-507. PMID 20487310 DOI: 10.1111/j.1469-8137.2010.03283.x  0.01
2010 Miller RA, Stephanopoulos N, McFarland JM, Rosko AS, Geissler PL, Francis MB. Impact of assembly state on the defect tolerance of TMV-based light harvesting arrays. Journal of the American Chemical Society. 132: 6068-74. PMID 20392093 DOI: 10.1021/ja909566z  0.01
2010 Bichon BJ, McFarland JM, Mahadevan S. Applying EGRA to reliability analysis of systems with multiple failure modes Collection of Technical Papers - Aiaa/Asme/Asce/Ahs/Asc Structures, Structural Dynamics and Materials Conference 0.01
2009 Geml J, Laursen GA, Timling I, McFarland JM, Booth MG, Lennon N, Nusbaum C, Taylor DL. Molecular phylogenetic biodiversity assessment of arctic and boreal ectomycorrhizal Lactarius Pers. (Russulales; Basidiomycota) in Alaska, based on soil and sporocarp DNA. Molecular Ecology. 18: 2213-27. PMID 19389163 DOI: 10.1111/j.1365-294X.2009.04192.x  0.01
2009 Antos JM, McFarland JM, Iavarone AT, Francis MB. Chemoselective tryptophan labeling with rhodium carbenoids at mild pH. Journal of the American Chemical Society. 131: 6301-8. PMID 19366262 DOI: 10.1021/ja900094h  0.01
2009 Ruess RW, McFarland JM, Trummer LM, Rohrs-Richey JK. Disease-mediated declines in N-fixation inputs by Alnus tenuifolia to early-successional floodplains in interior and south-central Alaska Ecosystems. 12: 489-502. DOI: 10.1007/s10021-009-9237-5  0.01
2009 McFarland JM, Bichon BJ. Bayesian model averaging for reliability analysis with probability distribution model form uncertainty Collection of Technical Papers - Aiaa/Asme/Asce/Ahs/Asc Structures, Structural Dynamics and Materials Conference 0.01
2009 McFarland JM, Riha DS. Uncertainty quantification methods for helicopter fatigue reliability analysis Annual Forum Proceedings - Ahs International. 3: 2730-2737.  0.01
2008 McFarland JM, Joshi NS, Francis MB. Characterization of a three-component coupling reaction on proteins by isotopic labeling and nuclear magnetic resonance spectroscopy. Journal of the American Chemical Society. 130: 7639-44. PMID 18498164 DOI: 10.1021/ja710927q  0.01
2008 Bichon BJ, Eldred MS, Swiler LP, Mahadevan S, McFarland JM. Efficient global reliability analysis for nonlinear implicit performance functions Aiaa Journal. 46: 2459-2468. DOI: 10.2514/1.34321  0.01
2007 Bichon BJ, Eldred MS, Swiler LP, Mahadevan S, McFarland JM. Multimodal reliability assessment for complex engineering applications using efficient global optimization Collection of Technical Papers - Aiaa/Asme/Asce/Ahs/Asc Structures, Structural Dynamics and Materials Conference. 3: 3029-3040.  0.01
2005 Lascelles BD, McFarland JM, Swann H. Guidelines for safe and effective use of NSAIDs in dogs. Veterinary Therapeutics : Research in Applied Veterinary Medicine. 6: 237-51. PMID 16299670  0.01
2005 McFarland JM, Francis MB. Reductive alkylation of proteins using iridium catalyzed transfer hydrogenation. Journal of the American Chemical Society. 127: 13490-1. PMID 16190700 DOI: 10.1021/ja054686c  0.01
2001 McFarland JM, Lattal KA. Determinants of reinforcer accumulation during an operant task. Journal of the Experimental Analysis of Behavior. 76: 321-38. PMID 11768714 DOI: 10.1901/jeab.2001.76-321  0.01
2000 Bales GT, Gerber GS, Minor TX, Mhoon DA, McFarland JM, Kim HL, Brendler CB. Effect of preoperative biofeedback/pelvic floor training on continence in men undergoing radical prostatectomy. Urology. 56: 627-30. PMID 11018619 DOI: 10.1016/S0090-4295(00)00687-7  0.01
1997 McFarland JM, Baddour LM, Nelson JE, Elkins SK, Craven RB, Cropp BC, Chang GJ, Grindstaff AD, Craig AS, Smith RJ. Imported yellow fever in a United States citizen. Clinical Infectious Diseases : An Official Publication of the Infectious Diseases Society of America. 25: 1143-7. PMID 9402373  0.01
1997 Coughenour GE, McFarland JM, Kesling HS, Nandi MK, Liotta FJ. Di-t-butyl peroxide as a diesel fuel additive Chemtech. 27: 38-41.  0.01
1996 Kreider GJ, Barnes JE, Smitherman JE, McFarland JM. Innovative fast-track development for Cote d'Ivoire Proceedings of the Annual Offshore Technology Conference. 2: 617-628.  0.01
1995 Bhandari G, Kim Y, McFarland JM, Rheingold AL, Theopold KH. Paramagnetic (benzyl)chromium complexes as homogeneous ethylene polymerization catalysts Organometallics. 14: 738-745.  0.01
1992 Janik TS, Churchill MR, See RF, Randall SL, McFarland JM, Atwood JD. Structure of trans‐carbonylmethylbis(tri‐p‐tolylphosphine)iridium(I), trans‐[Ir(CO)(CH3){P(p‐C6H4CH3)3}2] Acta Crystallographica Section C. 48: 1493-1495. DOI: 10.1107/S0108270191014890  0.01
1992 Clark LM, Hayes SE, Hayes DM, McFarland JM, Miller RL, Shalmi CL, Soltis MG, Susnow R, Strong RL. Flash photochemical measurements in the physical chemistry laboratory: Kinetics of deactivation of electronically excited aromatic molecules by oxygen Journal of Chemical Education. 69: 336-339.  0.01
1991 McFarland JM, Churchill MR, See RF, Lake CH, Atwood JD. Formation of a heterobimetallic compound by reductive elimination of CH4 and oxidative cleavage of an aryl-phosphorus bond in reaction of trans-MeIr(CO)[P(p-tolyl)3]2 with HMoCp(CO)3: Crystal and molecular structures of CpMo(CO)2[μ-P(p-tolyl)2]Ir(p-tolyl)[P(p-tolyl) 3](CO)2 .. Organometallics. 10: 3530-3537.  0.01
1990 Lattal KA, McFarland JM, Joyce JH. What is happening in psychology of learning courses? The Behavior Analyst / Maba. 13: 121-30. PMID 22478060  0.01
1987 Gillette DM, Corey RD, Helferich WG, McFarland JM, Lowenstine LJ, Moody DE, Hammock BD, Shull LR. Comparative toxicology of tetrachlorobiphenyls in mink and rats. I. Changes in hepatic enzyme activity and smooth endoplasmic reticulum volume. Fundamental and Applied Toxicology : Official Journal of the Society of Toxicology. 8: 5-14. PMID 3104118 DOI: 10.1016/0272-0590(87)90095-9  0.01
1975 McFarland JM. The market mechanism and solid waste management Water, Air, and Soil Pollution. 4: 251-262. DOI: 10.1007/BF00160453  0.01
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