| Year |
Citation |
Score |
| 2022 |
Oliveira V, Polónia ARM, Cleary DFR, Huang YM, de Voogd NJ, Keller-Costa T, Costa R, Gomes NCM. Assessing the genomic composition, putative ecological relevance and biotechnological potential of plasmids from sponge bacterial symbionts. Microbiological Research. 265: 127183. PMID 36108440 DOI: 10.1016/j.micres.2022.127183 |
0.33 |
|
| 2021 |
Sweet M, Villela H, Keller-Costa T, Costa R, Romano S, Bourne DG, Cárdenas A, Huggett MJ, Kerwin AH, Kuek F, Medina M, Meyer JL, Müller M, Pollock FJ, Rappé MS, et al. Insights into the Cultured Bacterial Fraction of Corals. Msystems. e0124920. PMID 34156291 DOI: 10.1128/mSystems.01249-20 |
0.321 |
|
| 2020 |
Pascoal F, Magalhães C, Costa R. The Link Between the Ecology of the Prokaryotic Rare Biosphere and Its Biotechnological Potential. Frontiers in Microbiology. 11: 231. PMID 32140148 DOI: 10.3389/Fmicb.2020.00231 |
0.365 |
|
| 2020 |
Califano G, Kwantes M, Abreu MH, Costa R, Wichard T. Cultivating the Macroalgal Holobiont: Effects of Integrated Multi-Trophic Aquaculture on the Microbiome of Ulva rigida (Chlorophyta) Frontiers in Marine Science. 7. DOI: 10.3389/Fmars.2020.00052 |
0.388 |
|
| 2019 |
Silva SG, Blom J, Keller-Costa T, Costa R. Comparative genomics reveals complex natural product biosynthesis capacities and carbon metabolism across host-associated and free-living Aquimarina (Bacteroidetes, Flavobacteriaceae) species. Environmental Microbiology. PMID 31314938 DOI: 10.1111/1462-2920.14747 |
0.363 |
|
| 2019 |
Helfrich EJN, Ueoka R, Dolev A, Rust M, Meoded RA, Bhushan A, Califano G, Costa R, Gugger M, Steinbeck C, Moreno P, Piel J. Automated structure prediction of trans-acyltransferase polyketide synthase products. Nature Chemical Biology. PMID 31308532 DOI: 10.1038/S41589-019-0313-7 |
0.31 |
|
| 2019 |
Karimi E, Keller-Costa T, Slaby BM, Cox CJ, da Rocha UN, Hentschel U, Costa R. Genomic blueprints of sponge-prokaryote symbiosis are shared by low abundant and cultivatable Alphaproteobacteria. Scientific Reports. 9: 1999. PMID 30760820 DOI: 10.1038/S41598-019-38737-X |
0.364 |
|
| 2018 |
Raimundo I, Silva SG, Costa R, Keller-Costa T. Bioactive Secondary Metabolites from Octocoral-Associated Microbes-New Chances for Blue Growth. Marine Drugs. 16. PMID 30518125 DOI: 10.3390/Md16120485 |
0.35 |
|
| 2018 |
Díez-Vives C, Esteves AIS, Costa R, Nielsen S, Thomas T. Detecting signatures of a sponge-associated lifestyle in bacterial genomes. Environmental Microbiology Reports. PMID 29707906 DOI: 10.1111/1758-2229.12655 |
0.366 |
|
| 2018 |
Karimi E, Slaby BM, Soares AR, Blom J, Hentschel U, Costa R. Metagenomic binning reveals versatile nutrient cycling and distinct adaptive features in alphaproteobacterial symbionts of marine sponges. Fems Microbiology Ecology. PMID 29701776 DOI: 10.1093/Femsec/Fiy074 |
0.403 |
|
| 2018 |
Rodrigues GN, Lago-Lestón A, Costa R, Keller-Costa T. Draft Genome Sequence of Labrenzia sp. Strain EL143, a Coral-Associated Alphaproteobacterium with Versatile Symbiotic Living Capability and Strong Halogen Degradation Potential. Genome Announcements. 6. PMID 29519836 DOI: 10.1128/Genomea.00132-18 |
0.339 |
|
| 2018 |
Silva SG, Lago-Lestón A, Costa R, Keller-Costa T. Draft Genome Sequence of Sphingorhabdus sp. Strain EL138, a Metabolically Versatile Alphaproteobacterium Isolated from the Gorgonian Coral Eunicella labiata. Genome Announcements. 6. PMID 29496842 DOI: 10.1128/Genomea.00142-18 |
0.335 |
|
| 2017 |
Karimi E, Ramos M, Gonçalves JMS, Xavier JR, Reis MP, Costa R. Comparative Metagenomics Reveals the Distinctive Adaptive Features of the Spongia officinalis Endosymbiotic Consortium. Frontiers in Microbiology. 8: 2499. PMID 29312205 DOI: 10.3389/Fmicb.2017.02499 |
0.416 |
|
| 2017 |
Keller-Costa T, Eriksson D, Gonçalves JMS, Gomes NCM, Lago-Lestón A, Costa R. The gorgonian coral Eunicella labiata hosts a distinct prokaryotic consortium amenable to cultivation. Fems Microbiology Ecology. PMID 29069352 DOI: 10.1093/Femsec/Fix143 |
0.445 |
|
| 2017 |
Moitinho-Silva L, Nielsen S, Amir A, Gonzalez A, Ackermann GL, Cerrano C, Astudillo-Garcia C, Easson C, Sipkema D, Liu F, Steinert G, Kotoulas G, McCormack GP, Feng G, Bell JJ, ... ... Costa R, et al. The sponge microbiome project. Gigascience. 6: 1-7. PMID 29020741 DOI: 10.1093/Gigascience/Gix077 |
0.419 |
|
| 2017 |
Castanho S, Califano G, Soares F, Costa R, Mata L, Pousão-Ferreira P, Ribeiro L. The effect of live feeds bathed with the red seaweed Asparagopsis armata on the survival, growth and physiology status of Sparus aurata larvae. Fish Physiology and Biochemistry. PMID 28315161 DOI: 10.1007/S10695-017-0351-6 |
0.322 |
|
| 2017 |
Califano G, Castanho S, Soares F, Ribeiro L, Cox CJ, Mata L, Costa R. Molecular Taxonomic Profiling of Bacterial Communities in a Gilthead Seabream (Sparus aurata) Hatchery. Frontiers in Microbiology. 8: 204. PMID 28261166 DOI: 10.3389/Fmicb.2017.00204 |
0.402 |
|
| 2017 |
Karimi E, Gonçalves JM, Reis M, Costa R. Draft Genome Sequence of Microbacterium sp. Strain Alg239_V18, an Actinobacterium Retrieved from the Marine Sponge Spongia sp. Genome Announcements. 5. PMID 28104653 DOI: 10.1128/Genomea.01457-16 |
0.324 |
|
| 2016 |
Rotini A, Mejia AY, Costa R, Migliore L, Winters G. Ecophysiological Plasticity and Bacteriome Shift in the Seagrass Halophila stipulacea along a Depth Gradient in the Northern Red Sea. Frontiers in Plant Science. 7: 2015. PMID 28119709 DOI: 10.3389/Fpls.2016.02015 |
0.426 |
|
| 2016 |
Keller-Costa T, Silva R, Lago-Lestón A, Costa R. Genomic Insights into Aquimarina sp. Strain EL33, a Bacterial Symbiont of the Gorgonian Coral Eunicella labiata. Genome Announcements. 4. PMID 27540075 DOI: 10.1128/Genomea.00855-16 |
0.343 |
|
| 2016 |
Coelho FJ, Cleary DF, Costa R, Ferreira M, Polónia AR, Silva AM, Simões MM, Oliveira V, Gomes NC. Multi-taxon activity profiling reveals differential microbial response to reduced seawater pH and oil pollution. Molecular Ecology. PMID 27480881 DOI: 10.1111/Mec.13779 |
0.308 |
|
| 2016 |
Thomas T, Moitinho-Silva L, Lurgi M, Björk JR, Easson C, Astudillo-García C, Olson JB, Erwin PM, López-Legentil S, Luter H, Chaves-Fonnegra A, Costa R, Schupp PJ, Steindler L, Erpenbeck D, et al. Diversity, structure and convergent evolution of the global sponge microbiome. Nature Communications. 7: 11870. PMID 27306690 DOI: 10.1038/Ncomms11870 |
0.392 |
|
| 2016 |
Cúcio C, Engelen AH, Costa R, Muyzer G. Rhizosphere Microbiomes of European + Seagrasses Are Selected by the Plant, But Are Not Species Specific. Frontiers in Microbiology. 7: 440. PMID 27065991 DOI: 10.3389/Fmicb.2016.00440 |
0.422 |
|
| 2016 |
Franco T, Califano G, Gonçalves AC, Cúcio C, Costa R. Draft Genome Sequence of Vibrio sp. Strain Evh12, a Bacterium Retrieved from the Gorgonian Coral Eunicella verrucosa. Genome Announcements. 4. PMID 26868405 DOI: 10.1128/Genomea.01729-15 |
0.347 |
|
| 2016 |
Grueneberg J, Engelen AH, Costa R, Wichard T. Macroalgal Morphogenesis Induced by Waterborne Compounds and Bacteria in Coastal Seawater. Plos One. 11: e0146307. PMID 26745366 DOI: 10.1371/Journal.Pone.0146307 |
0.384 |
|
| 2015 |
Kopf A, Bicak M, Kottmann R, Schnetzer J, Kostadinov I, Lehmann K, Fernandez-Guerra A, Jeanthon C, Rahav E, Ullrich M, Wichels A, Gerdts G, Polymenakou P, Kotoulas G, Siam R, ... ... Costa R, et al. The ocean sampling day consortium. Gigascience. 4: 27. PMID 26097697 DOI: 10.1186/S13742-015-0066-5 |
0.337 |
|
| 2015 |
Califano G, Franco T, Gonçalves AC, Castanho S, Soares F, Ribeiro L, Mata L, Costa R. Draft Genome Sequence of Aliivibrio fischeri Strain 5LC, a Bacterium Retrieved from Gilthead Sea Bream (Sparus aurata) Larvae Reared in Aquaculture. Genome Announcements. 3. PMID 26044435 DOI: 10.1128/Genomea.00593-15 |
0.339 |
|
| 2015 |
Gonçalves AC, Franco T, Califano G, Dowd SE, Pohnert G, Costa R. Draft Genome Sequence of Vibrio sp. Strain Vb278, an Antagonistic Bacterium Isolated from the Marine Sponge Sarcotragus spinosulus. Genome Announcements. 3. PMID 26021918 DOI: 10.1128/Genomea.00521-15 |
0.345 |
|
| 2015 |
Silva YJ, Manco S, Costa R, Rodrigues V, Dias J, Ferreira H, Pousão-Ferreira P, Almeida A, Cunha A, Calado R, Gomes NCM. Effect of different culture conditions on the structural diversity of prokaryote communities in the sediment of earth ponds stocked with gilthead seabream Sparus aurata (Linnaeus, 1758) Aquaculture Research. 46: 1760-1769. DOI: 10.1111/Are.12336 |
0.365 |
|
| 2014 |
Hardoim CC, Cardinale M, Cúcio AC, Esteves AI, Berg G, Xavier JR, Cox CJ, Costa R. Effects of sample handling and cultivation bias on the specificity of bacterial communities in keratose marine sponges. Frontiers in Microbiology. 5: 611. PMID 25477868 DOI: 10.3389/Fmicb.2014.00611 |
0.448 |
|
| 2014 |
Hardoim CC, Costa R. Microbial communities and bioactive compounds in marine sponges of the family irciniidae-a review. Marine Drugs. 12: 5089-122. PMID 25272328 DOI: 10.3390/Md12105089 |
0.372 |
|
| 2014 |
Hardoim CC, Costa R. Temporal dynamics of prokaryotic communities in the marine sponge Sarcotragus spinosulus. Molecular Ecology. 23: 3097-112. PMID 24814756 DOI: 10.1111/Mec.12789 |
0.425 |
|
| 2014 |
Alexandrino M, Costa R, Canário AV, Costa MC. Clostridia initiate heavy metal bioremoval in mixed sulfidogenic cultures. Environmental Science & Technology. 48: 3378-85. PMID 24568215 DOI: 10.1021/Es4052044 |
0.307 |
|
| 2014 |
Keller-Costa T, Jousset A, van Overbeek L, van Elsas JD, Costa R. The freshwater sponge Ephydatia fluviatilis harbours diverse Pseudomonas species (Gammaproteobacteria, Pseudomonadales) with broad-spectrum antimicrobial activity. Plos One. 9: e88429. PMID 24533086 DOI: 10.1371/Journal.Pone.0088429 |
0.442 |
|
| 2013 |
Hardoim CC, Cox CJ, Peixoto RS, Rosado AS, Costa R, van Elsas JD. Diversity of the candidate phylum Poribacteria in the marine sponge Aplysina fulva. Brazilian Journal of Microbiology : [Publication of the Brazilian Society For Microbiology]. 44: 329-34. PMID 24159324 DOI: 10.1590/S1517-83822013000100048 |
0.369 |
|
| 2013 |
Esteves AI, Hardoim CC, Xavier JR, Gonçalves JM, Costa R. Molecular richness and biotechnological potential of bacteria cultured from Irciniidae sponges in the north-east Atlantic. Fems Microbiology Ecology. 85: 519-36. PMID 23621863 DOI: 10.1111/1574-6941.12140 |
0.436 |
|
| 2013 |
Coelho FJ, Rocha RJ, Pires AC, Ladeiro B, Castanheira JM, Costa R, Almeida A, Cunha A, Lillebø AI, Ribeiro R, Pereira R, Lopes I, Marques C, Moreira-Santos M, Calado R, et al. Development and validation of an experimental life support system for assessing the effects of global climate change and environmental contamination on estuarine and coastal marine benthic communities. Global Change Biology. 19: 2584-95. PMID 23616466 DOI: 10.1111/Gcb.12227 |
0.359 |
|
| 2013 |
Costa R, Keller-Costa T, Gomes NC, da Rocha UN, van Overbeek L, van Elsas JD. Evidence for selective bacterial community structuring in the freshwater sponge Ephydatia fluviatilis. Microbial Ecology. 65: 232-44. PMID 22903086 DOI: 10.1007/S00248-012-0102-2 |
0.429 |
|
| 2013 |
Hardoim CC, Cardinale M, Cucio AC, Xavier JR, Cox C, Costa R. Degrees of host specificity, effects of sample handling and extent of cultivation bias elucidated for bacterial communities in closely related marine sponges F1000research. 4. DOI: 10.7490/F1000Research.1094672.1 |
0.398 |
|
| 2013 |
Esteves AI, Hardoim CC, Xavier JR, Gonçalves JM, Costa R. Diversity of bacteria cultured from Irciniidae sponges F1000research. 4. DOI: 10.7490/F1000Research.1094668.1 |
0.326 |
|
| 2012 |
Hardoim CCP, Esteves AIS, Pires FR, Gonçalves JMS, Cox CJ, Xavier JR, Costa R. Phylogenetically and Spatially Close Marine Sponges Harbour Divergent Bacterial Communities Plos One. 7. PMID 23300853 DOI: 10.1371/Journal.Pone.0053029 |
0.412 |
|
| 2011 |
Gomes NC, Cleary DF, Calado R, Costa R. Mangrove bacterial richness. Communicative & Integrative Biology. 4: 419-23. PMID 21966560 DOI: 10.4161/Cib.15253 |
0.395 |
|
| 2011 |
Alexandrino M, Macías F, Costa R, Gomes NC, Canário AV, Costa MC. A bacterial consortium isolated from an Icelandic fumarole displays exceptionally high levels of sulfate reduction and metals resistance. Journal of Hazardous Materials. 187: 362-70. PMID 21296493 DOI: 10.1016/J.Jhazmat.2011.01.035 |
0.357 |
|
| 2011 |
van Elsas JD, Semenov AV, Costa R, Trevors JT. Survival of Escherichia coli in the environment: fundamental and public health aspects. The Isme Journal. 5: 173-83. PMID 20574458 DOI: 10.1038/Ismej.2010.80 |
0.348 |
|
| 2010 |
Gomes NC, Flocco CG, Costa R, Junca H, Vilchez R, Pieper DH, Krögerrecklenfort E, Paranhos R, Mendonça-Hagler LC, Smalla K. Mangrove microniches determine the structural and functional diversity of enriched petroleum hydrocarbon-degrading consortia. Fems Microbiology Ecology. 74: 276-90. PMID 20812953 DOI: 10.1111/J.1574-6941.2010.00962.X |
0.557 |
|
| 2010 |
Dini-Andreote F, Andreote FD, Costa R, Taketani RG, van Elsas JD, Araújo WL. Bacterial soil community in a Brazilian sugarcane field Plant and Soil. 336: 337-349. DOI: 10.1007/S11104-010-0486-Z |
0.479 |
|
| 2009 |
Hardoim CC, Costa R, Araújo FV, Hajdu E, Peixoto R, Lins U, Rosado AS, van Elsas JD. Diversity of bacteria in the marine sponge Aplysina fulva in Brazilian coastal waters. Applied and Environmental Microbiology. 75: 3331-43. PMID 19304829 DOI: 10.1128/Aem.02101-08 |
0.454 |
|
| 2009 |
Costa R, van Aarle IM, Mendes R, van Elsas JD. Genomics of pyrrolnitrin biosynthetic loci: evidence for conservation and whole-operon mobility within gram-negative bacteria. Environmental Microbiology. 11: 159-75. PMID 18793314 DOI: 10.1111/J.1462-2920.2008.01750.X |
0.379 |
|
| 2008 |
van Elsas JD, Costa R, Jansson J, Sjöling S, Bailey M, Nalin R, Vogel TM, van Overbeek L. The metagenomics of disease-suppressive soils - experiences from the METACONTROL project. Trends in Biotechnology. 26: 591-601. PMID 18774191 DOI: 10.1016/J.Tibtech.2008.07.004 |
0.36 |
|
| 2007 |
Costa R, Gomes NC, Krögerrecklenfort E, Opelt K, Berg G, Smalla K. Pseudomonas community structure and antagonistic potential in the rhizosphere: insights gained by combining phylogenetic and functional gene-based analyses. Environmental Microbiology. 9: 2260-73. PMID 17686023 DOI: 10.1111/J.1462-2920.2007.01340.X |
0.638 |
|
| 2007 |
Adesina MF, Lembke A, Costa R, Speksnijder A, Smalla K. Screening of bacterial isolates from various European soils for in vitro antagonistic activity towards Rhizoctonia solani and Fusarium oxysporum: Site-dependent composition and diversity revealed Soil Biology and Biochemistry. 39: 2818-2828. DOI: 10.1016/J.Soilbio.2007.06.004 |
0.574 |
|
| 2006 |
Costa R, Salles JF, Berg G, Smalla K. Cultivation-independent analysis of Pseudomonas species in soil and in the rhizosphere of field-grown Verticillium dahliae host plants. Environmental Microbiology. 8: 2136-49. PMID 17107555 DOI: 10.1111/J.1462-2920.2006.01096.X |
0.635 |
|
| 2006 |
Berg G, Opelt K, Zachow C, Lottmann J, Götz M, Costa R, Smalla K. The rhizosphere effect on bacteria antagonistic towards the pathogenic fungus Verticillium differs depending on plant species and site. Fems Microbiology Ecology. 56: 250-61. PMID 16629754 DOI: 10.1111/J.1574-6941.2005.00025.X |
0.611 |
|
| 2006 |
Costa R, Götz M, Mrotzek N, Lottmann J, Berg G, Smalla K. Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. Fems Microbiology Ecology. 56: 236-49. PMID 16629753 DOI: 10.1111/J.1574-6941.2005.00026.X |
0.642 |
|
| 2006 |
Götz M, Gomes NC, Dratwinski A, Costa R, Berg G, Peixoto R, Mendonça-Hagler L, Smalla K. Survival of gfp-tagged antagonistic bacteria in the rhizosphere of tomato plants and their effects on the indigenous bacterial community. Fems Microbiology Ecology. 56: 207-18. PMID 16629751 DOI: 10.1111/J.1574-6941.2006.00093.X |
0.589 |
|
| 2006 |
Costa R, Gomes NCM, Peixoto RS, Rumjanek N, Berg G, Mendonça-Hagler LCS, Smalla K. Diversity and antagonistic potential of Pseudomonas spp. associated to the rhizosphere of maize grown in a subtropical organic farm Soil Biology and Biochemistry. 38: 2434-2447. DOI: 10.1016/J.Soilbio.2006.03.003 |
0.746 |
|
| 2005 |
Berg G, Zachow C, Lottmann J, Götz M, Costa R, Smalla K. Impact of plant species and site on rhizosphere-associated fungi antagonistic to Verticillium dahliae kleb. Applied and Environmental Microbiology. 71: 4203-13. PMID 16085804 DOI: 10.1128/Aem.71.8.4203-4213.2005 |
0.595 |
|
| 2005 |
Meier J, Costa R, Smalla K, Boehrer B, Wendt-Potthoff K. Temperature dependence of Fe(III) and sulfate reduction rates and its effect on growth and composition of bacterial enrichments from an acidic pit lake neutralization experiment Geobiology. 3: 261-274. DOI: 10.1111/J.1472-4669.2006.00065.X |
0.505 |
|
| 2004 |
Costa R, Gomes NC, Milling A, Smalla K. An optmized protocol for simultaneous extraction of DNA and RNA from soils Brazilian Journal of Microbiology. 35: 230-234. DOI: 10.1590/S1517-83822004000200011 |
0.53 |
|
| 2003 |
Gomes NC, Fagbola O, Costa R, Rumjanek NG, Buchner A, Mendona-Hagler L, Smalla K. Dynamics of fungal communities in bulk and maize rhizosphere soil in the tropics. Applied and Environmental Microbiology. 69: 3758-66. PMID 12839741 DOI: 10.1128/Aem.69.7.3758-3766.2003 |
0.62 |
|
| 2002 |
Gomes NCM, Heuer H, Schönfeld J, Costa R, Mendonça-Hagler L, Smalla K. Bacterial diversity of the rhizosphere of maize (Zea mays) grown in tropical soil studied by temperature gradient gel electrophoresis Plant and Soil. 232: 167-180. DOI: 10.1007/978-94-010-0566-1_17 |
0.741 |
|
| 2001 |
Gomes NCM, Heuer H, Schönfeld J, Costa R, Mendonça-Hagler L, Smalla K. Plant and Soil. 232: 167-180. DOI: 10.1023/A:1010350406708 |
0.672 |
|
| Show low-probability matches. |