Josef Ozer, Ph.D. - Related publications

Pharmacology Boston University School of Medicine, Boston, MA 
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50 most relevant papers in past 60 days:
Year Citation  Score
2020 Gurdon JB, Javed K, Vodnala M, Garrett N. Long-term association of a transcription factor with its chromatin binding site can stabilize gene expression and cell fate commitment. Proceedings of the National Academy of Sciences of the United States of America. 117: 15075-15084. PMID 32532919 DOI: 10.1073/pnas.2000467117   
2020 Partridge EC, Chhetri SB, Prokop JW, Ramaker RC, Jansen CS, Goh ST, Mackiewicz M, Newberry KM, Brandsmeier LA, Meadows SK, Messer CL, Hardigan AA, Coppola CJ, Dean EC, Jiang S, et al. Occupancy maps of 208 chromatin-associated proteins in one human cell type. Nature. 583: 720-728. PMID 32728244 DOI: 10.1038/s41586-020-2023-4   
2020 Jiang Q, Lu B, Wang G, Ye H. Transcriptional Inhibition of by Crustacean Female Sex Hormone in the Mud Crab, . International Journal of Molecular Sciences. 21. PMID 32722594 DOI: 10.3390/ijms21155300   
2020 Keller SH, Jena SG, Yamazaki Y, Lim B. Regulation of spatiotemporal limits of developmental gene expression via enhancer grammar. Proceedings of the National Academy of Sciences of the United States of America. PMID 32541043 DOI: 10.1073/pnas.1917040117   
2020 Wang J, Shi K, Wu Z, Zhang C, Li Y, Deng H, Zhao S, Deng W. Disruption of the interaction between TFIIAαβ and TFIIA recognition element inhibits RNA polymerase II gene transcription in a promoter context-dependent manner. Biochimica Et Biophysica Acta. Gene Regulatory Mechanisms. 194611. PMID 32745626 DOI: 10.1016/j.bbagrm.2020.194611   
2020 , Snyder MP, Gingeras TR, Moore JE, Weng Z, Gerstein MB, Ren B, Hardison RC, Stamatoyannopoulos JA, Graveley BR, Feingold EA, Pazin MJ, Pagan M, Gilchrist DA, Hitz BC, et al. Perspectives on ENCODE. Nature. 583: 693-698. PMID 32728248 DOI: 10.1038/s41586-020-2449-8   
2020 Vierstra J, Lazar J, Sandstrom R, Halow J, Lee K, Bates D, Diegel M, Dunn D, Neri F, Haugen E, Rynes E, Reynolds A, Nelson J, Johnson A, Frerker M, et al. Global reference mapping of human transcription factor footprints. Nature. 583: 729-736. PMID 32728250 DOI: 10.1038/s41586-020-2528-x   
2020 Verzi MP, Shivdasani RA. Epigenetic regulation of intestinal stem cell differentiation. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 32628072 DOI: 10.1152/ajpgi.00084.2020   
2020 Barter MJ, Cheung K, Falk J, Panagiotopoulos AC, Cosimini C, O'Brien S, Teja-Putri K, Neill G, Deehan DJ, Young DA. Dynamic chromatin accessibility landscape changes following interleukin-1 stimulation. Epigenetics. 1-14. PMID 32741307 DOI: 10.1080/15592294.2020.1789266   
2020 Zeng J, Chen JY, Meng J, Chen Z. Inflammation and DNA methylation coregulate the CtBP-PCAF-c-MYC transcriptional complex to activate the expression of a long non-coding RNA in acute pancreatitis. International Journal of Biological Sciences. 16: 2116-2130. PMID 32549759 DOI: 10.7150/ijbs.43557   
2020 Zhu KC, Zhang N, Liu BS, Guo L, Guo HY, Jiang SG, Zhang DC. Transcription factor pparαb activates fads2s to promote LC-PUFA biosynthesis in the golden pompano Trachinotus ovatus (Linnaeus 1758). International Journal of Biological Macromolecules. PMID 32535207 DOI: 10.1016/j.ijbiomac.2020.06.085   
2020 Ochiai H, Hayashi T, Umeda M, Yoshimura M, Harada A, Shimizu Y, Nakano K, Saitoh N, Liu Z, Yamamoto T, Okamura T, Ohkawa Y, Kimura H, Nikaido I. Genome-wide kinetic properties of transcriptional bursting in mouse embryonic stem cells. Science Advances. 6: eaaz6699. PMID 32596448 DOI: 10.1126/sciadv.aaz6699   
2020 Peng JJ, Wu YC, Wang SQ, Niu JF, Cao XY. SmbHLH53 Is Relevant to Jasmonate Signaling and Plays Dual Roles in Regulating the Genes for Enzymes in the Pathway for Salvianolic Acid B Biosynthesis in Salvia miltiorrhiza. Gene. 144920. PMID 32593720 DOI: 10.1016/j.gene.2020.144920   
2020 Syed AP, Greulich F, Ansari SA, Uhlenhaut NH. Anti-inflammatory glucocorticoid action: genomic insights and emerging concepts. Current Opinion in Pharmacology. 53: 35-44. PMID 32416533 DOI: 10.1016/j.coph.2020.03.003   
2020 Xie D, He Z, Dong Y, Gong Z, Nie G, Li Y. Molecular Cloning, Characterization, and Expression Regulation of Acyl-CoA Synthetase 6 Gene and Promoter in Common Carp . International Journal of Molecular Sciences. 21. PMID 32635148 DOI: 10.3390/ijms21134736   
2020 Amin R, Rahman CR, Ahmed S, Sifat MHR, Liton MNK, Rahman MM, Khan MZH, Shatabda S. iPromoter-BnCNN: a Novel Branched CNN Based Predictor for Identifying and Classifying Sigma Promoters. Bioinformatics (Oxford, England). PMID 32614400 DOI: 10.1093/bioinformatics/btaa609   
2020 Bayraktar EC, La K, Karpman K, Unlu G, Ozerdem C, Ritter DJ, Alwaseem H, Molina H, Hoffmann HH, Millner A, Atilla-Gokcumen GE, Gamazon ER, Rushing AR, Knapik EW, Basu S, et al. Metabolic coessentiality mapping identifies C12orf49 as a regulator of SREBP processing and cholesterol metabolism. Nature Metabolism. 2: 487-498. PMID 32694732 DOI: 10.1038/s42255-020-0206-9   
2020 Ouyang N, Boyle AP. TRACE: transcription factor footprinting using chromatin accessibility data and DNA sequence. Genome Research. PMID 32660981 DOI: 10.1101/gr.258228.119   
2020 Wang Y, Zhang X, Zhao Y, Yang J, He Y, Li G, Ma W, Huang X, Su J. Transcription factor PyHY5 binds to the promoters of PyWD40 and PyMYB10 and regulates its expression in red pear 'Yunhongli No. 1'. Plant Physiology and Biochemistry : Ppb. 154: 665-674. PMID 32738704 DOI: 10.1016/j.plaphy.2020.07.008   
2020 Lu M, Xiang Z, Gong T, Zhou X, Zhang Z, Tang B, Zeng J, Wang L, Cui T, Li Y. Intrinsic Fluoride Tolerance Regulated by a Transcription Factor. Journal of Dental Research. 22034520927385. PMID 32485128 DOI: 10.1177/0022034520927385   
2020 Cheng ZL, Zhang ML, Lin HP, Gao C, Song JB, Zheng Z, Li L, Zhang Y, Shen X, Zhang H, Huang Z, Zhan W, Zhang C, Hu X, Sun YP, et al. The Zscan4-Tet2 Transcription Nexus Regulates Metabolic Rewiring and Enhances Proteostasis to Promote Reprogramming. Cell Reports. 32: 107877. PMID 32668244 DOI: 10.1016/j.celrep.2020.107877   
2020 Chung Nien Chin S, O'Connor L, Scurr M, Busada JT, Graham AN, Alipour Talesh G, Tran CP, Sarkar S, Minamoto T, Giraud AS, Cidlowski JA, Sutton P, Menheniott TR. Coordinate expression loss of GKN1 and GKN2 in gastric cancer via impairment of a glucocorticoid-responsive enhancer. American Journal of Physiology. Gastrointestinal and Liver Physiology. PMID 32538140 DOI: 10.1152/ajpgi.00019.2020   
2020 Saripalli G, Singh K, Gautam T, Kumar S, Raghuvanshi S, Prasad P, Jain N, Sharma PK, Balyan HS, Gupta PK. Genome-wide analysis of H3K4me3 and H3K27me3 modifications due to Lr28 for leaf rust resistance in bread wheat (Triticum aestivum). Plant Molecular Biology. PMID 32627097 DOI: 10.1007/s11103-020-01029-4   
2020 Chen Y, Liu J, Zhi S, Zheng Q, Ma W, Huang J, Liu Y, Liu D, Liang P, Songyang Z. Repurposing type I-F CRISPR-Cas system as a transcriptional activation tool in human cells. Nature Communications. 11: 3136. PMID 32561716 DOI: 10.1038/s41467-020-16880-8   
2020 Fang C, Rao S, Crispino JD, Ntziachristos P. Determinants and role of chromatin organization in acute leukemia. Leukemia. PMID 32690881 DOI: 10.1038/s41375-020-0981-z   
2020 Weis-Banke SE, Lerdrup M, Kleine-Kohlbrecher D, Mohammad F, Sidoli S, Jensen ON, Yanase T, Nakamura T, Iwase A, Stylianou A, Abu-Rustum NR, Aghajanian C, Soslow R, Da Cruz Paula A, Koche RP, et al. Mutant FOXL2C134W highjacks SMAD4 and SMAD2/3 to drive adult granulosa cell tumors. Cancer Research. PMID 32641411 DOI: 10.1158/0008-5472.CAN-20-0259   
2020 Debarba JA, Sehabiague MPC, Monteiro KM, Gerber AL, Vasconcelos ATR, Ferreira HB, Zaha A. Transcriptomic Analysis of the Early Strobilar Development of . Pathogens (Basel, Switzerland). 9. PMID 32545493 DOI: 10.3390/pathogens9060465   
2020 Davis JE, Insigne KD, Jones EM, Hastings QA, Boldridge WC, Kosuri S. Dissection of c-AMP Response Element Architecture by Using Genomic and Episomal Massively Parallel Reporter Assays. Cell Systems. PMID 32603702 DOI: 10.1016/j.cels.2020.05.011   
2020 Geigges M, Gubser PM, Unterstab G, Lecoultre Y, Paro R, Hess C. Reference Genes for Expression Studies in Human CD8 Naïve and Effector Memory T Cells under Resting and Activating Conditions. Scientific Reports. 10: 9411. PMID 32523060 DOI: 10.1038/s41598-020-66367-1   
2020 Li Q, Wu M, Cui K, Zhu S, Mai K, Ai Q. Characterization of antiviral immune response induced by poly(I:C) in macrophages of farmed large yellow croaker (Larimichthys crocea). Fish & Shellfish Immunology. PMID 32497725 DOI: 10.1016/j.fsi.2020.05.066   
2020 Kamiyama T, Sun W, Tani N, Nakamura A, Niwa R. Poly(A) Binding Protein Is Required for Nuclear Localization of the Ecdysteroidogenic Transcription Factor Molting Defective in the Prothoracic Gland of . Frontiers in Genetics. 11: 636. PMID 32676099 DOI: 10.3389/fgene.2020.00636   
2020 Roth SJ, Heinz S, Benner C. ARTDeco: automatic readthrough transcription detection. Bmc Bioinformatics. 21: 214. PMID 32456667 DOI: 10.1186/s12859-020-03551-0   
2020 Yang Y, Zheng Y, Wang P, Li X, Zhan C, Linhardt RJ, Zhang F, Liu X, Zhan J, Bai Z. Characterization and application of a putative transcription factor (SUT2) in Pichia pastoris. Molecular Genetics and Genomics : Mgg. PMID 32566991 DOI: 10.1007/s00438-020-01697-3   
2020 Amante SM, Montibus B, Cowley M, Barkas N, Setiadi J, Saadeh H, Giemza J, Contreras-Castillo S, Fleischanderl K, Schulz R, Oakey RJ. Transcription of intragenic CpG islands influences spatiotemporal host gene pre-mRNA processing. Nucleic Acids Research. PMID 32621610 DOI: 10.1093/nar/gkaa556   
2020 Branton SA, Ghorbani A, Bolt BN, Fifield H, Berghuis LM, Larijani M. Activation-induced cytidine deaminase can target multiple topologies of double-stranded DNA in a transcription-independent manner. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. PMID 32437054 DOI: 10.1096/fj.201903036RR   
2020 Estacio-Gómez A, Hassan A, Walmsley E, Le LW, Southall TD. Dynamic neurotransmitter specific transcription factor expression profiles during development. Biology Open. 9. PMID 32493733 DOI: 10.1242/bio.052928   
2020 Poudel S, Tsunemoto H, Seif Y, Sastry AV, Szubin R, Xu S, Machado H, Olson CA, Anand A, Pogliano J, Nizet V, Palsson BO. Revealing 29 sets of independently modulated genes in , their regulators, and role in key physiological response. Proceedings of the National Academy of Sciences of the United States of America. PMID 32616573 DOI: 10.1073/pnas.2008413117   
2020 Wu M, Karadoulama E, Lloret-Llinares M, Rouviere JO, Vaagensø CS, Moravec M, Li B, Wang J, Wu G, Gockert M, Pelechano V, Jensen TH, Sandelin A. The RNA exosome shapes the expression of key protein-coding genes. Nucleic Acids Research. PMID 32710631 DOI: 10.1093/nar/gkaa594   
2020 Liu LK, Gao Y, Gao RL, Li DL, Zhang QX, Wang KJ, Liu HP. A barrier-to-autointegration factor promotes white spot syndrome virus infection in a crustacean Cherax quadricarinatus. Fish & Shellfish Immunology. PMID 32693160 DOI: 10.1016/j.fsi.2020.07.031   
2020 Ali E, Raza MA, Cai M, Hussain N, Shahzad AN, Hussain M, Ali M, Bukhari SAH, Sun P. Calmodulin-binding transcription activator (CAMTA) genes family: Genome-wide survey and phylogenetic analysis in flax (Linum usitatissimum). Plos One. 15: e0236454. PMID 32702710 DOI: 10.1371/journal.pone.0236454   
2020 Tao T, Shi H, Mariani L, Abraham BJ, Durbin AD, Zimmerman MW, Powers JT, Missios P, Ross KN, Perez-Atayde AR, Bulyk ML, Young RA, Daley GQ, Look AT. LIN28B regulates transcription and potentiates MYCN-induced neuroblastoma through binding to ZNF143 at target gene promotors. Proceedings of the National Academy of Sciences of the United States of America. PMID 32601179 DOI: 10.1073/pnas.1922692117   
2020 Zhang J, Liu J, Lee D, Lou S, Chen Z, Gürsoy G, Gerstein M. DiNeR: a Differential graphical model for analysis of co-regulation Network Rewiring. Bmc Bioinformatics. 21: 281. PMID 32615918 DOI: 10.1186/s12859-020-03605-3   
2020 Ramos Pittol JM, Milona A, Morris I, Willemsen ECL, van der Veen SW, Kalkhoven E, van Mil SWC. FXR Isoforms Control Different Metabolic Functions in Liver Cells via Binding to Specific DNA Motifs. Gastroenterology. PMID 32712104 DOI: 10.1053/j.gastro.2020.07.036   
2020 Chen Y, Wang Y, Liu X, Xu J, Zhang MQ. Model-based analysis of chromatin interactions from dCas9-Based CAPTURE-3C-seq. Plos One. 15: e0236666. PMID 32735574 DOI: 10.1371/journal.pone.0236666   
2020 Desterke C, Hugues P, Hwang JW, Bennaceur-Griscelli A, Turhan AG. Embryonic Program Activated during Blast Crisis of Chronic Myelogenous Leukemia (CML) Implicates a TCF7L2 and MYC Cooperative Chromatin Binding. International Journal of Molecular Sciences. 21. PMID 32517078 DOI: 10.3390/ijms21114057   
2020 Pfleger J, Coleman RC, Ibetti J, Roy R, Kyriazis ID, Gao E, Drosatos K, Koch WJ. Genomic Binding Patterns of Forkhead Box Protein O1 Reveal its Unique Role in Cardiac Hypertrophy. Circulation. PMID 32640834 DOI: 10.1161/CIRCULATIONAHA.120.046356   
2020 Zang Z, Lv Y, Liu S, Yang W, Ci J, Ren X, Wang Z, Wu H, Ma W, Jiang L, Yang W. A Novel ERF Transcription Factor, , Positively Regulates Maize Resistance to . Frontiers in Plant Science. 11: 850. PMID 32612628 DOI: 10.3389/fpls.2020.00850   
2020 Bakker R, Mani M, Carthew RW. The Wg and Dpp morphogens regulate gene expression by modulating the frequency of transcriptional bursts. Elife. 9. PMID 32568073 DOI: 10.7554/eLife.56076   
2020 Wang G, Zhang ZR, Wang YF, Hong YQ, Liu XM, Yao N, Dong YY, Li HY. [Bioinformatics analysis of safflower WD40 transcription factor family genes]. Zhongguo Zhong Yao Za Zhi = Zhongguo Zhongyao Zazhi = China Journal of Chinese Materia Medica. 45: 3432-3440. PMID 32726059 DOI: 10.19540/j.cnki.cjcmm.20200506.107   
2020 Hernández-Candia CN, Tucker CL. Optogenetic Control of Gene Expression Using Cryptochrome 2 and a Light-Activated Degron. Methods in Molecular Biology (Clifton, N.J.). 2173: 151-158. PMID 32651916 DOI: 10.1007/978-1-0716-0755-8_10