Moritz Helmstaedter - Publications

Connectomics Max Planck Institute for Brain Research, Frankfurt am Main, Hessen, Germany 

47 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2020 Abbott LF, Bock DD, Callaway EM, Denk W, Dulac C, Fairhall AL, Fiete I, Harris KM, Helmstaedter M, Jain V, Kasthuri N, LeCun Y, Lichtman JW, Littlewood PB, Luo L, et al. The Mind of a Mouse. Cell. 182: 1372-1376. PMID 32946777 DOI: 10.1016/j.cell.2020.08.010  0.96
2020 Yuste R, Hawrylycz M, Aalling N, Aguilar-Valles A, Arendt D, Arnedillo RA, Ascoli GA, Bielza C, Bokharaie V, Bergmann TB, Bystron I, Capogna M, Chang Y, Clemens A, de Kock CPJ, ... ... Helmstaedter M, et al. A community-based transcriptomics classification and nomenclature of neocortical cell types. Nature Neuroscience. PMID 32839617 DOI: 10.1038/s41593-020-0685-8  1
2020 Karimi A, Odenthal J, Drawitsch F, Boergens KM, Helmstaedter M. Cell-type specific innervation of cortical pyramidal cells at their apical dendrites. Elife. 9. PMID 32108571 DOI: 10.7554/eLife.46876  0.64
2019 Motta A, Berning M, Boergens KM, Staffler B, Beining M, Loomba S, Hennig P, Wissler H, Helmstaedter M. Dense connectomic reconstruction in layer 4 of the somatosensory cortex. Science (New York, N.Y.). PMID 31649140 DOI: 10.1126/science.aay3134  0.64
2018 Boergens KM, Kapfer C, Helmstaedter M, Denk W, Borst A. Full reconstruction of large lobula plate tangential cells in Drosophila from a 3D EM dataset. Plos One. 13: e0207828. PMID 30485333 DOI: 10.1371/journal.pone.0207828  0.96
2018 Drawitsch F, Karimi A, Boergens KM, Helmstaedter M. FluoEM, virtual labeling of axons in 3-dimensional electron microscopy data for long-range connectomics. Elife. 7. PMID 30106377 DOI: 10.7554/eLife.38976  0.64
2017 Schmidt H, Gour A, Straehle J, Boergens KM, Brecht M, Helmstaedter M. Axonal synapse sorting in medial entorhinal cortex. Nature. 549: 469-475. PMID 28959971 DOI: 10.1038/nature24005  0.64
2017 Staffler B, Berning M, Boergens KM, Gour A, van der Smagt P, Helmstaedter M. SynEM, automated synapse detection for connectomics. Elife. 6. PMID 28708060 DOI: 10.7554/eLife.26414  0.64
2017 Boergens KM, Berning M, Bocklisch T, Bräunlein D, Drawitsch F, Frohnhofen J, Herold T, Otto P, Rzepka N, Werkmeister T, Werner D, Wiese G, Wissler H, Helmstaedter M. webKnossos: efficient online 3D data annotation for connectomics. Nature Methods. PMID 28604722 DOI: 10.1038/nmeth.4331  0.64
2015 Berning M, Boergens KM, Helmstaedter M. SegEM: Efficient Image Analysis for High-Resolution Connectomics. Neuron. 87: 1193-206. PMID 26402603 DOI: 10.1016/j.neuron.2015.09.003  1
2015 Borst A, Helmstaedter M. Common circuit design in fly and mammalian motion vision. Nature Neuroscience. 18: 1067-76. PMID 26120965 DOI: 10.1038/nn.4050  0.44
2015 Helmstaedter M. The mutual inspirations of machine learning and neuroscience Neuron. 86: 25-28. PMID 25856482 DOI: 10.1016/j.neuron.2015.03.031  1
2015 Hoffmann JH, Meyer HS, Schmitt AC, Straehle J, Weitbrecht T, Sakmann B, Helmstaedter M. Synaptic Conductance Estimates of the Connection Between Local Inhibitor Interneurons and Pyramidal Neurons in Layer 2/3 of a Cortical Column. Cerebral Cortex (New York, N.Y. : 1991). PMID 25761638 DOI: 10.1093/cercor/bhv039  1
2015 Koelbl C, Helmstaedter M, Lübke J, Feldmeyer D. A barrel-related interneuron in layer 4 of rat somatosensory cortex with a high intrabarrel connectivity. Cerebral Cortex (New York, N.Y. : 1991). 25: 713-25. PMID 24076498 DOI: 10.1093/cercor/bht263  1
2015 Borst A, Helmstaedter M. Common circuit design in fly and mammalian motion vision Nature Neuroscience. 18: 1067-1076. DOI: 10.1038/nn.4050  1
2015 Hua Y, Laserstein P, Helmstaedter M. Large-volume en-bloc staining for electron microscopy-based connectomics Nature Communications. 6. DOI: 10.1038/ncomms8923  1
2013 Helmstaedter M, Briggman KL, Turaga SC, Jain V, Seung HS, Denk W. Connectomic reconstruction of the inner plexiform layer in the mouse retina. Nature. 500: 168-74. PMID 23925239 DOI: 10.1038/nature12346  1
2013 Helmstaedter M. Cellular-resolution connectomics: Challenges of dense neural circuit reconstruction Nature Methods. 10: 501-507. PMID 23722209 DOI: 10.1038/nmeth.2476  1
2013 Helmstaedter M. Connectomics: New methods for the dense reconstruction of neuronal circuits | Connectomics: Neue methoden zur dichten rekonstruktion neuronaler schaltkreise Neuroforum. 19: 22-25.  1
2012 Egger R, Narayanan RT, Helmstaedter M, de Kock CP, Oberlaender M. 3D reconstruction and standardization of the rat vibrissal cortex for precise registration of single neuron morphology. Plos Computational Biology. 8: e1002837. PMID 23284282 DOI: 10.1371/journal.pcbi.1002837  1
2012 Andres B, Koethe U, Kroeger T, Helmstaedter M, Briggman KL, Denk W, Hamprecht FA. 3D segmentation of SBFSEM images of neuropil by a graphical model over supervoxel boundaries. Medical Image Analysis. 16: 796-805. PMID 22374536 DOI: 10.1016/  1
2012 Denk W, Briggman KL, Helmstaedter M. Structural neurobiology: missing link to a mechanistic understanding of neural computation. Nature Reviews. Neuroscience. 13: 351-8. PMID 22353782 DOI: 10.1038/nrn3169  1
2012 Helmstaedter M, Mitra PP. Computational methods and challenges for large-scale circuit mapping. Current Opinion in Neurobiology. 22: 162-9. PMID 22221862 DOI: 10.1016/j.conb.2011.11.010  1
2012 Oberlaender M, de Kock CP, Bruno RM, Ramirez A, Meyer HS, Dercksen VJ, Helmstaedter M, Sakmann B. Cell type-specific three-dimensional structure of thalamocortical circuits in a column of rat vibrissal cortex. Cerebral Cortex (New York, N.Y. : 1991). 22: 2375-91. PMID 22089425 DOI: 10.1093/cercor/bhr317  1
2011 Kleinfeld D, Bharioke A, Blinder P, Bock DD, Briggman KL, Chklovskii DB, Denk W, Helmstaedter M, Kaufhold JP, Lee WC, Meyer HS, Micheva KD, Oberlaender M, Prohaska S, Reid RC, et al. Large-scale automated histology in the pursuit of connectomes. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 31: 16125-38. PMID 22072665 DOI: 10.1523/JNEUROSCI.4077-11.2011  1
2011 Meyer HS, Schwarz D, Wimmer VC, Schmitt AC, Kerr JN, Sakmann B, Helmstaedter M. Inhibitory interneurons in a cortical column form hot zones of inhibition in layers 2 and 5A. Proceedings of the National Academy of Sciences of the United States of America. 108: 16807-12. PMID 21949377 DOI: 10.1073/pnas.1113648108  1
2011 Helmstaedter M, Briggman KL, Denk W. High-accuracy neurite reconstruction for high-throughput neuroanatomy. Nature Neuroscience. 14: 1081-8. PMID 21743472 DOI: 10.1038/nn.2868  1
2011 Briggman KL, Helmstaedter M, Denk W. Wiring specificity in the direction-selectivity circuit of the retina. Nature. 471: 183-8. PMID 21390125 DOI: 10.1038/nature09818  1
2011 Jain V, Turaga SC, Briggman KL, Helmstaedter MN, Denk W, Seung HS. Learning to agglomerate superpixel hierarchies Advances in Neural Information Processing Systems 24: 25th Annual Conference On Neural Information Processing Systems 2011, Nips 2011 1
2010 Meyer HS, Wimmer VC, Oberlaender M, de Kock CP, Sakmann B, Helmstaedter M. Number and laminar distribution of neurons in a thalamocortical projection column of rat vibrissal cortex. Cerebral Cortex (New York, N.Y. : 1991). 20: 2277-86. PMID 20534784 DOI: 10.1093/cercor/bhq067  1
2010 Meyer HS, Wimmer VC, Hemberger M, Bruno RM, de Kock CP, Frick A, Sakmann B, Helmstaedter M. Cell type-specific thalamic innervation in a column of rat vibrissal cortex. Cerebral Cortex (New York, N.Y. : 1991). 20: 2287-303. PMID 20534783 DOI: 10.1093/cercor/bhq069  1
2010 Turaga SC, Murray JF, Jain V, Roth F, Helmstaedter M, Briggman K, Denk W, Seung HS. Convolutional networks can learn to generate affinity graphs for image segmentation. Neural Computation. 22: 511-38. PMID 19922289 DOI: 10.1162/neco.2009.10-08-881  1
2010 Jain V, Bollmann B, Richardson M, Berger DR, Helmstaedter MN, Briggman KL, Denk W, Bowden JB, Mendenhall JM, Abraham WC, Harris KM, Kasthuri N, Hayworth KJ, Schalek R, Tapia JC, et al. Boundary learning by optimization with topological constraints Proceedings of the Ieee Computer Society Conference On Computer Vision and Pattern Recognition. 2488-2495. DOI: 10.1109/CVPR.2010.5539950  1
2010 Helmstaedter M, Feldmeyer D. Axons predict neuronal connectivity within and between cortical columns and serve as primary classifiers of interneurons in a cortical column New Aspects of Axonal Structure and Function. 141-155. DOI: 10.1007/978-1-4419-1676-1_8  1
2009 Helmstaedter M, Sakmann B, Feldmeyer D. Neuronal correlates of local, lateral, and translaminar inhibition with reference to cortical columns. Cerebral Cortex (New York, N.Y. : 1991). 19: 926-37. PMID 18832335 DOI: 10.1093/cercor/bhn141  1
2009 Helmstaedter M, Sakmann B, Feldmeyer D. L2/3 interneuron groups defined by multiparameter analysis of axonal projection, dendritic geometry, and electrical excitability. Cerebral Cortex (New York, N.Y. : 1991). 19: 951-62. PMID 18802122 DOI: 10.1093/cercor/bhn130  1
2009 Helmstaedter M, Sakmann B, Feldmeyer D. The relation between dendritic geometry, electrical excitability, and axonal projections of L2/3 interneurons in rat barrel cortex. Cerebral Cortex (New York, N.Y. : 1991). 19: 938-50. PMID 18787231 DOI: 10.1093/cercor/bhn138  1
2009 Turaga SC, Briggman KL, Helmstaedter M, Denk W, Seung HS. Maximin affinity learning of image segmentation Advances in Neural Information Processing Systems 22 - Proceedings of the 2009 Conference. 1865-1873.  1
2008 Helmstaedter M, Briggman KL, Denk W. 3D structural imaging of the brain with photons and electrons. Current Opinion in Neurobiology. 18: 633-41. PMID 19361979 DOI: 10.1016/j.conb.2009.03.005  1
2008 Helmstaedter M, Staiger JF, Sakmann B, Feldmeyer D. Efficient recruitment of layer 2/3 interneurons by layer 4 input in single columns of rat somatosensory cortex. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 28: 8273-84. PMID 18701690 DOI: 10.1523/JNEUROSCI.5701-07.2008  1
2008 Ascoli GA, Alonso-Nanclares L, Anderson SA, Barrionuevo G, Benavides-Piccione R, Burkhalter A, Buzsáki G, Cauli B, Defelipe J, Fairén A, Feldmeyer D, Fishell G, Fregnac Y, Freund TF, ... ... Helmstaedter M, et al. Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex. Nature Reviews. Neuroscience. 9: 557-68. PMID 18568015 DOI: 10.1038/nrn2402  1
2008 Frick A, Feldmeyer D, Helmstaedter M, Sakmann B. Monosynaptic connections between pairs of L5A pyramidal neurons in columns of juvenile rat somatosensory cortex. Cerebral Cortex (New York, N.Y. : 1991). 18: 397-406. PMID 17548800 DOI: 10.1093/cercor/bhm074  1
2008 Andres B, Köthe U, Helmstaedter M, Denk W, Hamprecht FA. Segmentation of SBFSEM volume data of neural tissue by hierarchical classification Lecture Notes in Computer Science (Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 5096: 142-152. DOI: 10.1007/978-3-540-69321-5_15  1
2007 Helmstaedter M, de Kock CP, Feldmeyer D, Bruno RM, Sakmann B. Reconstruction of an average cortical column in silico. Brain Research Reviews. 55: 193-203. PMID 17822776 DOI: 10.1016/j.brainresrev.2007.07.011  1
2007 Schaefer AT, Helmstaedter M, Schmitt AC, Bar-Yehuda D, Almog M, Ben-Porat H, Sakmann B, Korngreen A. Dendritic voltage-gated K+ conductance gradient in pyramidal neurones of neocortical layer 5B from rats. The Journal of Physiology. 579: 737-52. PMID 17158172 DOI: 10.1113/jphysiol.2006.122564  1
2007 Jain V, Murray JF, Roth F, Turaga S, Zhigulin V, Briggman KL, Helmstaedter MN, Denk W, Seung HS. Supervised learning of image restoration with convolutional networks Proceedings of the Ieee International Conference On Computer Vision. DOI: 10.1109/ICCV.2007.4408909  1
2003 Schaefer AT, Helmstaedter M, Sakmann B, Korngreen A. Correction of conductance measurements in non-space-clamped structures: 1. Voltage-gated K+ channels. Biophysical Journal. 84: 3508-28. PMID 12770864 DOI: 10.1016/S0006-3495(03)75086-3  1
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