| Year |
Citation |
Score |
| 2022 |
Habicher J, Varshney GK, Waldmann L, Snitting D, Allalou A, Zhang H, Ghanem A, Öhman Mägi C, Dierker T, Kjellén L, Burgess SM, Ledin J. Chondroitin/dermatan sulfate glycosyltransferase genes are essential for craniofacial development. Plos Genetics. 18: e1010067. PMID 35192612 DOI: 10.1371/journal.pgen.1010067 |
0.554 |
|
| 2021 |
Shin U, Nakhro K, Oh CK, Carrington B, Song H, Varshney GK, Kim Y, Song H, Jeon S, Robbins G, Kim S, Yoon S, Choi YJ, Kim YJ, Burgess S, et al. Large-scale generation and phenotypic characterization of zebrafish CRISPR mutants of DNA repair genes. Dna Repair. 107: 103173. PMID 34390914 DOI: 10.1016/j.dnarep.2021.103173 |
0.568 |
|
| 2021 |
Lin SJ, Vona B, Barbalho PG, Kaiyrzhanov R, Maroofian R, Petree C, Severino M, Stanley V, Varshney P, Bahena P, Alzahrani F, Alhashem A, Pagnamenta AT, Aubertin G, Estrada-Veras JI, ... ... Varshney GK, et al. Biallelic variants in KARS1 are associated with neurodevelopmental disorders and hearing loss recapitulated by the knockout zebrafish. Genetics in Medicine : Official Journal of the American College of Medical Genetics. PMID 34172899 DOI: 10.1038/s41436-021-01239-1 |
0.748 |
|
| 2021 |
Colón-Cruz L, Rodriguez-Morales R, Santana-Cruz A, Cantres-Velez J, Torrado-Tapias A, Lin SJ, Yudowski G, Kensler R, Marie B, Burgess SM, Renaud O, Varshney GK, Behra M. Cnr2 Is Important for Ribbon Synapse Maturation and Function in Hair Cells and Photoreceptors. Frontiers in Molecular Neuroscience. 14: 624265. PMID 33958989 DOI: 10.3389/fnmol.2021.624265 |
0.748 |
|
| 2020 |
Ichino N, Serres MR, Urban RM, Urban MD, Treichel AJ, Schaefbauer KJ, Greif LE, Varshney GK, Skuster KJ, McNulty MS, Daby CL, Wang Y, Liao HK, El-Rass S, Ding Y, et al. Building the vertebrate codex using the gene breaking protein trap library. Elife. 9. PMID 32779569 DOI: 10.7554/Elife.54572 |
0.582 |
|
| 2020 |
Rodríguez-Morales R, Vélez-Negrón V, Torrado-Tapias A, Varshney G, Behra M. Expression patterns of activating transcription factor 5 (atf5a and atf5b) in zebrafish. Gene Expression Patterns : Gep. 37: 119126. PMID 32663618 DOI: 10.1016/j.gep.2020.119126 |
0.729 |
|
| 2020 |
Banote RK, Chebli J, Şatır TM, Varshney GK, Camacho R, Ledin J, Burgess SM, Abramsson A, Zetterberg H. Amyloid precursor protein-b facilitates cell adhesion during early development in zebrafish. Scientific Reports. 10: 10127. PMID 32576936 DOI: 10.1038/s41598-020-66584-8 |
0.536 |
|
| 2019 |
Acevedo-Canabal A, Colón-Cruz L, Rodriguez-Morales R, Varshney GK, Burgess S, González-Sepúlveda L, Yudowski G, Behra M. Altered Swimming Behaviors in Zebrafish Larvae Lacking Cannabinoid Receptor 2. Cannabis and Cannabinoid Research. 4: 88-101. PMID 31236475 DOI: 10.1089/can.2018.0025 |
0.753 |
|
| 2019 |
Liu K, Petree C, Requena T, Varshney P, Varshney GK. Expanding the CRISPR Toolbox in Zebrafish for Studying Development and Disease. Frontiers in Cell and Developmental Biology. 7: 13. PMID 30886848 DOI: 10.3389/fcell.2019.00013 |
0.335 |
|
| 2018 |
Pei W, Xu L, Huang SC, Pettie K, Idol J, Rissone A, Jimenez E, Sinclair JW, Slevin C, Varshney GK, Jones M, Carrington B, Bishop K, Huang H, Sood R, et al. Guided genetic screen to identify genes essential in the regeneration of hair cells and other tissues. Npj Regenerative Medicine. 3: 11. PMID 29872546 DOI: 10.1038/s41536-018-0050-7 |
0.74 |
|
| 2016 |
Pei W, Tanaka K, Huang SC, Xu L, Liu B, Sinclair J, Idol J, Varshney GK, Huang H, Lin S, Nussenblatt RB, Mori R, Burgess SM. Extracellular HSP60 triggers tissue regeneration and wound healing by regulating inflammation and cell proliferation. Npj Regenerative Medicine. 1. PMID 28936359 DOI: 10.1038/npjregenmed.2016.13 |
0.757 |
|
| 2016 |
Watkins-Chow DE, Varshney GK, Garrett LJ, Chen Z, Jimenez EA, Rivas C, Bishop KS, Sood R, Harper UL, Pavan WJ, Burgess SM. Highly-Efficient Cpf1-Mediated Gene Targeting in Mice Following High Concentration Pronuclear Injection. G3 (Bethesda, Md.). PMID 28040780 DOI: 10.1534/g3.116.038091 |
0.765 |
|
| 2016 |
Varshney GK, Carrington B, Pei W, Bishop K, Chen Z, Fan C, Xu L, Jones M, LaFave MC, Ledin J, Sood R, Burgess SM. A high-throughput functional genomics workflow based on CRISPR/Cas9-mediated targeted mutagenesis in zebrafish. Nature Protocols. 11: 2357-2375. PMID 27809318 DOI: 10.1038/Nprot.2016.141 |
0.792 |
|
| 2016 |
Varshney GK, Burgess SM. DNA-guided genome editing using structure-guided endonucleases. Genome Biology. 17: 187. PMID 27640875 DOI: 10.1186/s13059-016-1055-4 |
0.536 |
|
| 2016 |
Pei W, Xu L, Varshney GK, Carrington B, Bishop K, Jones M, Huang SC, Idol J, Pretorius PR, Beirl A, Schimmenti LA, Kindt KS, Sood R, Burgess SM. Additive reductions in zebrafish PRPS1 activity result in a spectrum of deficiencies modeling several human PRPS1-associated diseases. Scientific Reports. 6: 29946. PMID 27425195 DOI: 10.1038/Srep29946 |
0.541 |
|
| 2016 |
Chandler RJ, LaFave MC, Varshney GK, Burgess SM, Venditti CP. Genotoxicity in Mice Following AAV Gene Delivery: A Safety Concern for Human Gene Therapy? Molecular Therapy : the Journal of the American Society of Gene Therapy. 24: 198-201. PMID 26906613 DOI: 10.1038/Mt.2016.17 |
0.761 |
|
| 2016 |
Vrljicak P, Tao S, Varshney GK, Quach HN, Joshi A, LaFave MC, Burgess SM, Sampath K. Genome-Wide Analysis of Transposon and Retroviral Insertions Reveals Preferential Integrations in Regions of DNA Flexibility. G3 (Bethesda, Md.). PMID 26818075 DOI: 10.1534/G3.115.026849 |
0.77 |
|
| 2015 |
Varshney GK, Sood R, Burgess SM. Understanding and Editing the Zebrafish Genome. Advances in Genetics. 92: 1-52. PMID 26639914 DOI: 10.1016/bs.adgen.2015.09.002 |
0.558 |
|
| 2015 |
Marquart GD, Tabor KM, Brown M, Strykowski JL, Varshney GK, LaFave MC, Mueller T, Burgess SM, Higashijima S, Burgess HA. A 3D Searchable Database of Transgenic Zebrafish Gal4 and Cre Lines for Functional Neuroanatomy Studies. Frontiers in Neural Circuits. 9: 78. PMID 26635538 DOI: 10.3389/Fncir.2015.00078 |
0.766 |
|
| 2015 |
Varshney GK, Zhang S, Pei W, Adomako-Ankomah A, Fohtung J, Schaffer K, Carrington B, Maskeri A, Slevin C, Wolfsberg T, Ledin J, Sood R, Burgess SM. CRISPRz: a database of zebrafish validated sgRNAs. Nucleic Acids Research. PMID 26438539 DOI: 10.1093/Nar/Gkv998 |
0.58 |
|
| 2015 |
Carrington B, Varshney GK, Burgess SM, Sood R. CRISPR-STAT: an easy and reliable PCR-based method to evaluate target-specific sgRNA activity. Nucleic Acids Research. PMID 26253739 DOI: 10.1093/nar/gkv802 |
0.562 |
|
| 2015 |
Seiler C, Gebhart N, Zhang Y, Shinton SA, Li YS, Ross NL, Liu X, Li Q, Bilbee AN, Varshney GK, LaFave MC, Burgess SM, Balciuniene J, Balciunas D, Hardy RR, et al. Mutagenesis Screen Identifies agtpbp1 and eps15L1 as Essential for T lymphocyte Development in Zebrafish. Plos One. 10: e0131908. PMID 26161877 DOI: 10.1371/Journal.Pone.0131908 |
0.788 |
|
| 2015 |
LaFave MC, Varshney GK, Burgess SM. GeIST: a pipeline for mapping integrated DNA elements. Bioinformatics (Oxford, England). 31: 3219-21. PMID 26049161 DOI: 10.1093/Bioinformatics/Btv350 |
0.77 |
|
| 2015 |
Varshney GK, Pei W, LaFave MC, Idol J, Xu L, Gallardo V, Carrington B, Bishop K, Jones M, Li M, Harper U, Huang SC, Prakash A, Chen W, Sood R, et al. High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome Research. 25: 1030-42. PMID 26048245 DOI: 10.1101/Gr.186379.114 |
0.791 |
|
| 2015 |
Yin L, Maddison LA, Li M, Kara N, LaFave MC, Varshney GK, Burgess SM, Patton JG, Chen W. Multiplex Conditional Mutagenesis Using Transgenic Expression of Cas9 and sgRNAs. Genetics. 200: 431-41. PMID 25855067 DOI: 10.1534/Genetics.115.176917 |
0.765 |
|
| 2015 |
Quach HN, Tao S, Vrljicak P, Joshi A, Ruan H, Sukumaran R, Varshney GK, LaFave MC, Burgess SM, Winkler C, Emelyanov A, Parinov S, Sampath K. A Multifunctional Mutagenesis System for Analysis of Gene Function in Zebrafish. G3 (Bethesda, Md.). 5: 1283-99. PMID 25840430 DOI: 10.1534/G3.114.015842 |
0.806 |
|
| 2015 |
Gallardo VE, Varshney GK, Lee M, Bupp S, Xu L, Shinn P, Crawford NP, Inglese J, Burgess SM. Phenotype-driven chemical screening in zebrafish for compounds that inhibit collective cell migration identifies multiple pathways potentially involved in metastatic invasion. Disease Models & Mechanisms. 8: 565-76. PMID 25810455 DOI: 10.1242/dmm.018689 |
0.51 |
|
| 2015 |
Chandler RJ, LaFave MC, Varshney GK, Trivedi NS, Carrillo-Carrasco N, Senac JS, Wu W, Hoffmann V, Elkahloun AG, Burgess SM, Venditti CP. Vector design influences hepatic genotoxicity after adeno-associated virus gene therapy. The Journal of Clinical Investigation. 125: 870-80. PMID 25607839 DOI: 10.1172/Jci79213 |
0.764 |
|
| 2015 |
Walia JS, Altaleb N, Bello A, Kruck C, LaFave MC, Varshney GK, Burgess SM, Chowdhury B, Hurlbut D, Hemming R, Kobinger GP, Triggs-Raine B. Long-term correction of sandhoff disease following intravenous delivery of rAAV9 to mouse neonates. Molecular Therapy : the Journal of the American Society of Gene Therapy. 23: 414-22. PMID 25515709 DOI: 10.1038/Mt.2014.240 |
0.743 |
|
| 2014 |
LaFave MC, Varshney GK, Vemulapalli M, Mullikin JC, Burgess SM. A defined zebrafish line for high-throughput genetics and genomics: NHGRI-1. Genetics. 198: 167-70. PMID 25009150 DOI: 10.1534/Genetics.114.166769 |
0.762 |
|
| 2014 |
LaFave MC, Varshney GK, Gildea DE, Wolfsberg TG, Baxevanis AD, Burgess SM. MLV integration site selection is driven by strong enhancers and active promoters. Nucleic Acids Research. 42: 4257-69. PMID 24464997 DOI: 10.1093/Nar/Gkt1399 |
0.777 |
|
| 2014 |
Varshney GK, Burgess SM. Mutagenesis and phenotyping resources in zebrafish for studying development and human disease. Briefings in Functional Genomics. 13: 82-94. PMID 24162064 DOI: 10.1093/bfgp/elt042 |
0.61 |
|
| 2013 |
Chen L, Stuart L, Ohsumi TK, Burgess S, Varshney GK, Dastur A, Borowsky M, Benes C, Lacy-Hulbert A, Schmidt EV. Transposon activation mutagenesis as a screening tool for identifying resistance to cancer therapeutics. Bmc Cancer. 13: 93. PMID 23442791 DOI: 10.1186/1471-2407-13-93 |
0.545 |
|
| 2013 |
Varshney GK, Lu J, Gildea DE, Huang H, Pei W, Yang Z, Huang SC, Schoenfeld D, Pho NH, Casero D, Hirase T, Mosbrook-Davis D, Zhang S, Jao LE, Zhang B, et al. A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome Research. 23: 727-35. PMID 23382537 DOI: 10.1101/Gr.151464.112 |
0.601 |
|
| 2013 |
Varshney GK, Huang H, Zhang S, Lu J, Gildea DE, Yang Z, Wolfsberg TG, Lin S, Burgess SM. The Zebrafish Insertion Collection (ZInC): a web based, searchable collection of zebrafish mutations generated by DNA insertion. Nucleic Acids Research. 41: D861-4. PMID 23180778 DOI: 10.1093/nar/gks946 |
0.555 |
|
| 2011 |
Amsterdam A, Varshney GK, Burgess SM. Retroviral-mediated Insertional Mutagenesis in Zebrafish. Methods in Cell Biology. 104: 59-82. PMID 21924157 DOI: 10.1016/B978-0-12-374814-0.00004-5 |
0.554 |
|
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