Henry D I Abarbanel - Publications

Affiliations: 
University of California, San Diego, La Jolla, CA 
Area:
Computational modeling, dynamics
Website:
http://inls.ucsd.edu/~hdia/

81 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2018 Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. Response to "Comment on 'A unifying view of synchronization for data assimilation in complex nonlinear networks'" [Chaos 28, 028101 (2018)]. Chaos (Woodbury, N.Y.). 28: 028102. PMID 29495669 DOI: 10.1063/1.5017246  0.64
2017 Abarbanel HDI, Shirman S, Breen D, Kadakia N, Rey D, Armstrong E, Margoliash D. A unifying view of synchronization for data assimilation in complex nonlinear networks. Chaos (Woodbury, N.Y.). 27: 126802. PMID 29289057 DOI: 10.1063/1.5001816  0.64
2016 Kadakia N, Armstrong E, Breen D, Morone U, Daou A, Margoliash D, Abarbanel HD. Nonlinear statistical data assimilation for HVC[Formula: see text] neurons in the avian song system. Biological Cybernetics. PMID 27688218 DOI: 10.1007/s00422-016-0697-3  0.64
2016 Nogaret A, Meliza CD, Margoliash D, Abarbanel HD. Automatic Construction of Predictive Neuron Models through Large Scale Assimilation of Electrophysiological Data. Scientific Reports. 6: 32749. PMID 27605157 DOI: 10.1038/srep32749  0.64
2015 Schumann-Bischoff J, Parlitz U, Abarbanel HD, Kostuk M, Rey D, Eldridge M, Luther S. Basin structure of optimization based state and parameter estimation. Chaos (Woodbury, N.Y.). 25: 053108. PMID 26026320 DOI: 10.1063/1.4920942  0.64
2015 Nogaret A, O'Callaghan EL, Lataro RM, Salgado HC, Meliza CD, Duncan E, Abarbanel HD, Paton JF. Silicon central pattern generators for cardiac diseases. The Journal of Physiology. 593: 763-74. PMID 25433077 DOI: 10.1113/jphysiol.2014.282723  0.88
2014 Rey D, Eldridge M, Morone U, Abarbanel HD, Parlitz U, Schumann-Bischoff J. Using waveform information in nonlinear data assimilation. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 90: 062916. PMID 25615173  0.4
2014 Ye J, Rozdeba PJ, Morone UI, Daou A, Abarbanel HD. Estimating the biophysical properties of neurons with intracellular calcium dynamics. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 89: 062714. PMID 25019821 DOI: 10.1103/PhysRevE.89.062714  0.88
2014 Meliza CD, Kostuk M, Huang H, Nogaret A, Margoliash D, Abarbanel HD. Estimating parameters and predicting membrane voltages with conductance-based neuron models. Biological Cybernetics. 108: 495-516. PMID 24962080 DOI: 10.1007/s00422-014-0615-5  0.88
2014 Knowlton C, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties III: network analysis using neuron spike times. Biological Cybernetics. 108: 261-73. PMID 24760370 DOI: 10.1007/s00422-014-0601-y  0.88
2012 Kostuk M, Toth BA, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties II: Path integral Monte Carlo methods. Biological Cybernetics. 106: 155-67. PMID 22526358 DOI: 10.1007/s00422-012-0487-5  0.88
2012 Neftci EO, Toth B, Indiveri G, Abarbanel HD. Dynamic state and parameter estimation applied to neuromorphic systems. Neural Computation. 24: 1669-94. PMID 22428591 DOI: 10.1162/NECO_a_00293  0.88
2011 Toth BA, Kostuk M, Meliza CD, Margoliash D, Abarbanel HD. Dynamical estimation of neuron and network properties I: variational methods. Biological Cybernetics. 105: 217-37. PMID 21986979 DOI: 10.1007/s00422-011-0459-1  0.88
2010 Haas JS, Kreuz T, Torcini A, Politi A, Abarbanel HD. Rate maintenance and resonance in the entorhinal cortex. The European Journal of Neuroscience. 32: 1930-9. PMID 21044179 DOI: 10.1111/j.1460-9568.2010.07455.x  0.88
2009 Quinn JC, Bryant PH, Creveling DR, Klein SR, Abarbanel HD. Parameter and state estimation of experimental chaotic systems using synchronization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 80: 016201. PMID 19658786 DOI: 10.1103/PhysRevE.80.016201  0.88
2009 Kreuz T, Chicharro D, Andrzejak RG, Haas JS, Abarbanel HD. Measuring multiple spike train synchrony. Journal of Neuroscience Methods. 183: 287-99. PMID 19591867 DOI: 10.1016/j.jneumeth.2009.06.039  0.88
2009 Gibb L, Gentner TQ, Abarbanel HD. Brain stem feedback in a computational model of birdsong sequencing. Journal of Neurophysiology. 102: 1763-78. PMID 19553477 DOI: 10.1152/jn.91154.2008  0.88
2009 Gibb L, Gentner TQ, Abarbanel HD. Inhibition and recurrent excitation in a computational model of sparse bursting in song nucleus HVC. Journal of Neurophysiology. 102: 1748-62. PMID 19515949 DOI: 10.1152/jn.00670.2007  0.88
2009 Muezzinoglu MK, Huerta R, Abarbanel HD, Ryan MA, Rabinovich MI. Chemosensor-driven artificial antennal lobe transient dynamics enable fast recognition and working memory. Neural Computation. 21: 1018-37. PMID 19018701 DOI: 10.1162/neco.2008.05-08-780  0.88
2008 Talathi SS, Abarbanel HD, Ditto WL. Temporal spike pattern learning. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 78: 031918. PMID 18851076 DOI: 10.1103/PhysRevE.78.031918  0.88
2008 Abarbanel HD, Creveling DR, Jeanne JM. Estimation of parameters in nonlinear systems using balanced synchronization. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 77: 016208. PMID 18351927 DOI: 10.1103/PhysRevE.77.016208  0.88
2007 Kreuz T, Haas JS, Morelli A, Abarbanel HD, Politi A. Measuring spike train synchrony. Journal of Neuroscience Methods. 165: 151-61. PMID 17628690 DOI: 10.1016/j.jneumeth.2007.05.031  0.88
2007 Shlens J, Kennel MB, Abarbanel HD, Chichilnisky EJ. Estimating information rates with confidence intervals in neural spike trains. Neural Computation. 19: 1683-719. PMID 17521276 DOI: 10.1162/neco.2007.19.7.1683  0.88
2007 Borst A, Abarbanel HD. Relating a calcium indicator signal to the unperturbed calcium concentration time-course. Theoretical Biology & Medical Modelling. 4: 7. PMID 17284310 DOI: 10.1186/1742-4682-4-7  0.88
2006 Haas JS, Nowotny T, Abarbanel HD. Spike-timing-dependent plasticity of inhibitory synapses in the entorhinal cortex. Journal of Neurophysiology. 96: 3305-13. PMID 16928795 DOI: 10.1152/jn.00551.2006  0.88
2006 Abarbanel HD, Talathi SS. Neural circuitry for recognizing interspike interval sequences. Physical Review Letters. 96: 148104. PMID 16712127 DOI: 10.1103/PhysRevLett.96.148104  1
2006 Briggman KL, Abarbanel HD, Kristan WB. From crawling to cognition: analyzing the dynamical interactions among populations of neurons. Current Opinion in Neurobiology. 16: 135-44. PMID 16564165 DOI: 10.1016/j.conb.2006.03.014  0.88
2005 Nowotny T, Huerta R, Abarbanel HD, Rabinovich MI. Self-organization in the olfactory system: one shot odor recognition in insects. Biological Cybernetics. 93: 436-46. PMID 16320081 DOI: 10.1007/s00422-005-0019-7  0.68
2005 Abarbanel HD, Talathi SS, Gibb L, Rabinovich MI. Synaptic plasticity with discrete state synapses. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 72: 031914. PMID 16241489 DOI: 10.1103/PhysRevE.72.031914  0.88
2005 Kennel MB, Shlens J, Abarbanel HD, Chichilnisky EJ. Estimating entropy rates with Bayesian confidence intervals. Neural Computation. 17: 1531-76. PMID 15901407 DOI: 10.1162/0899766053723050  0.88
2005 Denker M, Szücs A, Pinto RD, Abarbanel HD, Selverston AI. A network of electronic neural oscillators reproduces the dynamics of the periodically forced pyloric pacemaker group. Ieee Transactions On Bio-Medical Engineering. 52: 792-8. PMID 15887528 DOI: 10.1109/TBME.2005.844272  0.88
2005 Szücs A, Abarbanel HD, Rabinovich MI, Selverston AI. Dopamine modulation of spike dynamics in bursting neurons. The European Journal of Neuroscience. 21: 763-72. PMID 15733094 DOI: 10.1111/j.1460-9568.2005.03894.x  0.88
2005 Briggman KL, Abarbanel HD, Kristan WB. Optical imaging of neuronal populations during decision-making. Science (New York, N.Y.). 307: 896-901. PMID 15705844 DOI: 10.1126/science.1103736  0.88
2005 Flynn M, Abarbanel H, Kenyon G. Neurally-based algorithms for image processing Proceedings - Applied Imagery Pattern Recognition Workshop. 79-85. DOI: 10.1109/AIPR.2004.34  0.88
2004 Abarbanel HD, Talathi SS, Mindlin G, Rabinovich M, Gibb L. Dynamical model of birdsong maintenance and control. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 70: 051911. PMID 15600660 DOI: 10.1103/PhysRevE.70.051911  0.88
2004 Abarbanel HD, Gibb L, Mindlin GB, Rabinovich MI, Talathi S. Spike timing and synaptic plasticity in the premotor pathway of birdsong. Biological Cybernetics. 91: 159-67. PMID 15378372 DOI: 10.1007/s00422-004-0495-1  0.88
2004 Huerta R, Nowotny T, García-Sanchez M, Abarbanel HD, Rabinovich MI. Learning classification in the olfactory system of insects. Neural Computation. 16: 1601-40. PMID 15228747 DOI: 10.1162/089976604774201613  0.68
2004 Szucs A, Vehovszky A, Molnár G, Pinto RD, Abarbanel HD. Reliability and precision of neural spike timing: simulation of spectrally broadband synaptic inputs. Neuroscience. 126: 1063-73. PMID 15207339 DOI: 10.1016/j.neuroscience.2004.04.015  0.88
2004 Abarbanel HD, Gibb L, Mindlin GB, Talathi S. Mapping neural architectures onto acoustic features of birdsong. Journal of Neurophysiology. 92: 96-110. PMID 15028750 DOI: 10.1152/jn.01146.2003  0.88
2004 Lee YJ, Lee J, Kim YB, Ayers J, Volkovskifi A, Selverston A, Abarbanel H, Rabinovich M. Low power real time electronic neuron VLSI design using subthreshold technique Proceedings - Ieee International Symposium On Circuits and Systems. 4: IV-744-IV-747.  0.88
2003 Nowotny T, Zhigulin VP, Selverston AI, Abarbanel HD, Rabinovich MI. Enhancement of synchronization in a hybrid neural circuit by spike-timing dependent plasticity. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 23: 9776-85. PMID 14586005  0.88
2003 Nowotny T, Rabinovich MI, Huerta R, Abarbanel HD. Decoding temporal information through slow lateral excitation in the olfactory system of insects. Journal of Computational Neuroscience. 15: 271-81. PMID 14512751  0.68
2003 Abarbanel HD, Gibb L, Huerta R, Rabinovich MI. Biophysical model of synaptic plasticity dynamics. Biological Cybernetics. 89: 214-26. PMID 14504940 DOI: 10.1007/s00422-003-0422-x  0.88
2003 Nowotny T, Rabinovich MI, Abarbanel HD. Spatial representation of temporal information through spike-timing-dependent plasticity. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 68: 011908. PMID 12935177  0.68
2003 Whitehead A, Rabinovich MI, Huerta R, Zhigulin VP, Abarbanel HD. Dynamical synaptic plasticity: a model and connection to some experiments. Biological Cybernetics. 88: 229-35. PMID 12647230 DOI: 10.1007/s00422-002-0376-4  0.88
2003 Zhigulin VP, Rabinovich MI, Huerta R, Abarbanel HD. Robustness and enhancement of neural synchronization by activity-dependent coupling. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 67: 021901. PMID 12636709  0.88
2003 Szucs A, Pinto RD, Rabinovich MI, Abarbanel HD, Selverston AI. Synaptic modulation of the interspike interval signatures of bursting pyloric neurons. Journal of Neurophysiology. 89: 1363-77. PMID 12626616 DOI: 10.1152/jn.00732.2002  0.88
2003 Tenny R, Tsimring LS, Larson L, Abarbanel HD. Using distributed nonlinear dynamics for public key encryption. Physical Review Letters. 90: 047903. PMID 12570462  0.48
2002 Rabinovich MI, Pinto RD, Abarbanel HD, Tumer E, Stiesberg G, Huerta R, Selverston AI. Recovery of hidden information through synaptic dynamics. Network (Bristol, England). 13: 487-501. PMID 12463341 DOI: 10.1088/0954-898X/13/4/304  0.88
2002 Illing L, Bröcker J, Kocarev L, Parlitz U, Abarbanel HD. When are synchronization errors small? Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 036229. PMID 12366246 DOI: 10.1103/PhysRevE.66.036229  0.4
2002 Kennel MB, Abarbanel HD. False neighbors and false strands: a reliable minimum embedding dimension algorithm. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 66: 026209. PMID 12241269  0.32
2002 Elson RC, Selverston AI, Abarbanel HD, Rabinovich MI. Inhibitory synchronization of bursting in biological neurons: dependence on synaptic time constant. Journal of Neurophysiology. 88: 1166-76. PMID 12205138  0.72
2002 Abarbanel HD, Huerta R, Rabinovich MI. Dynamical model of long-term synaptic plasticity. Proceedings of the National Academy of Sciences of the United States of America. 99: 10132-7. PMID 12114531 DOI: 10.1073/pnas.132651299  0.68
2001 Varona P, Torres JJ, Huerta R, Abarbanel HD, Rabinovich MI. Regularization mechanisms of spiking-bursting neurons. Neural Networks : the Official Journal of the International Neural Network Society. 14: 865-75. PMID 11665777 DOI: 10.1016/S0893-6080(01)00046-6  0.88
2001 Abarbanel HD, Rabinovich MI. Neurodynamics: nonlinear dynamics and neurobiology. Current Opinion in Neurobiology. 11: 423-30. PMID 11502387  0.68
2001 Rabinovich M, Volkovskii A, Lecanda P, Huerta R, Abarbanel HD, Laurent G. Dynamical encoding by networks of competing neuron groups: winnerless competition. Physical Review Letters. 87: 068102. PMID 11497865  0.88
2001 Pinto RD, Elson RC, Szücs A, Rabinovich MI, Selverston AI, Abarbanel HD. Extended dynamic clamp: controlling up to four neurons using a single desktop computer and interface. Journal of Neuroscience Methods. 108: 39-48. PMID 11459616 DOI: 10.1016/S0165-0270(01)00368-5  0.88
2001 Bazhenov M, Stopfer M, Rabinovich M, Abarbanel HD, Sejnowski TJ, Laurent G. Model of cellular and network mechanisms for odor-evoked temporal patterning in the locust antennal lobe. Neuron. 30: 569-81. PMID 11395015 DOI: 10.1016/S0896-6273(01)00286-0  0.88
2001 Bazhenov M, Stopfer M, Rabinovich M, Huerta R, Abarbanel HD, Sejnowski TJ, Laurent G. Model of transient oscillatory synchronization in the locust antennal lobe. Neuron. 30: 553-67. PMID 11395014 DOI: 10.1016/S0896-6273(01)00284-7  0.88
2001 Lewis CT, Abarbanel HD, Kennel MB, Buhl M, Illing L. Synchronization of chaotic oscillations in doped fiber ring lasers. Physical Review. E, Statistical, Nonlinear, and Soft Matter Physics. 63: 016215. PMID 11304343 DOI: 10.1103/PhysRevE.63.016215  0.4
2001 Szücs A, Elson RC, Rabinovich MI, Abarbanel HD, Selverston AI. Nonlinear behavior of sinusoidally forced pyloric pacemaker neurons. Journal of Neurophysiology. 85: 1623-38. PMID 11287486  0.88
2001 Laurent G, Stopfer M, Friedrich RW, Rabinovich MI, Volkovskii A, Abarbanel HD. Odor encoding as an active, dynamical process: experiments, computation, and theory. Annual Review of Neuroscience. 24: 263-97. PMID 11283312 DOI: 10.1146/annurev.neuro.24.1.263  0.88
2001 Varona P, Torres JJ, Abarbanel HD, Rabinovich MI, Elson RC. Dynamics of two electrically coupled chaotic neurons: experimental observations and model analysis. Biological Cybernetics. 84: 91-101. PMID 11205354  0.68
2001 Huerta R, Varona P, Rabinovich MI, Abarbanel HD. Topology selection by chaotic neurons of a pyloric central pattern generator. Biological Cybernetics. 84: L1-8. PMID 11204401  0.88
2000 Rabinovich MI, Huerta R, Volkovskii A, Abarbanel HD, Stopfer M, Laurent G. Dynamical coding of sensory information with competitive networks. Journal of Physiology, Paris. 94: 465-71. PMID 11165913 DOI: 10.1016/S0928-4257(00)01092-5  0.88
2000 Selverston AI, Rabinovich MI, Abarbanel HD, Elson R, Szücs A, Pinto RD, Huerta R, Varona P. Reliable circuits from irregular neurons: a dynamical approach to understanding central pattern generators. Journal of Physiology, Paris. 94: 357-74. PMID 11165906 DOI: 10.1016/S0928-4257(00)01101-3  0.88
2000 Eguia MC, Rabinovich MI, Abarbanel HD. Information transmission and recovery in neural communications channels. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 7111-22. PMID 11102068  0.88
2000 Pinto RD, Varona P, Volkovskii AR, Szücs A, Abarbanel HD, Rabinovich MI. Synchronous behavior of two coupled electronic neurons. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 62: 2644-56. PMID 11088744  0.88
2000 Falcke M, Huerta R, Rabinovich MI, Abarbanel HD, Elson RC, Selverston AI. Modeling observed chaotic oscillations in bursting neurons: the role of calcium dynamics and IP3. Biological Cybernetics. 82: 517-27. PMID 10879435  0.88
2000 Szucs A, Varona P, Volkovskii AR, Abarbanel HD, Rabinovich MI, Selverston AI. Interacting biological and electronic neurons generate realistic oscillatory rhythms. Neuroreport. 11: 563-9. PMID 10718315  0.88
2000 Sushchik M, Rulkov N, Larson L, Tsimring L, Abarbanel H, Yao K, Volkovskii A. Chaotic Pulse Position Modulation: A Robust Method of Communicating with Chaos Ieee Communications Letters. 4: 128-130. DOI: 10.1109/4234.841319  0.88
1999 Elson RC, Huerta R, Abarbanel HD, Rabinovich MI, Selverston AI. Dynamic control of irregular bursting in an identified neuron of an oscillatory circuit. Journal of Neurophysiology. 82: 115-22. PMID 10400940  0.88
1998 Rabinovich MI, Abarbanel HD. The role of chaos in neural systems. Neuroscience. 87: 5-14. PMID 9722138  0.68
1996 Abarbanel HD, Rulkov NF, Sushchik MM. Generalized synchronization of chaos: The auxiliary system approach. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 53: 4528-4535. PMID 9964787  0.88
1996 Abarbanel HD, Huerta R, Rabinovich MI, Rulkov NF, Rowat PF, Selverston AI. Synchronized action of synaptically coupled chaotic model neurons. Neural Computation. 8: 1567-602. PMID 8888609  0.88
1995 Abarbanel HD, Rulkov NF, Sushchik MM. Blending chaotic attractors using the synchronization of chaos. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 52: 214-217. PMID 9963422 DOI: 10.1103/PhysRevE.52.214  0.88
1995 Rulkov NF, Sushchik MM, Tsimring LS, Abarbanel HD. Generalized synchronization of chaos in directionally coupled chaotic systems. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 51: 980-994. PMID 9962737 DOI: 10.1103/PhysRevE.51.980  0.88
1994 Rulkov NF, Tsimring LS, Abarbanel HD. Tracking unstable orbits in chaos using dissipative feedback control. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 50: 314-324. PMID 9961970 DOI: 10.1103/PhysRevE.50.314  0.88
1994 Abarbanel HD, Carroll TA, Pecora LM, Sidorowich JJ, Tsimring LS. Predicting physical variables in time-delay embedding. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 49: 1840-1853. PMID 9961423  0.48
1993 Abarbanel HD, Kennel MB. Local false nearest neighbors and dynamical dimensions from observed chaotic data. Physical Review. E, Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 47: 3057-3068. PMID 9960359  0.32
1992 Kennel MB, Brown R, Abarbanel HD. Determining embedding dimension for phase-space reconstruction using a geometrical construction. Physical Review. A. 45: 3403-3411. PMID 9907388  0.32
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