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Lucia Carbone, Ph.D. - Publications

Behavioral Neuroscience Oregon Health and Science University, Portland, OR 
Chromosome evolution, particularly centromere repositioning and chromosomal rearrangements

28 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Carbone L, Davis BA, Fei SS, White A, Nevonen KA, Takahashi D, Vinson A, True C, Roberts CT, Varlamov O. Synergistic Effects of Hyperandrogenemia and Obesogenic Western-style Diet on Transcription and DNA Methylation in Visceral Adipose Tissue of Nonhuman Primates. Scientific Reports. 9: 19232. PMID 31848372 DOI: 10.1038/S41598-019-55291-8  0.4
2019 Daughtry BL, Rosenkrantz JL, Lazar NH, Fei SS, Redmayne N, Torkenczy KA, Adey A, Yan M, Gao L, Park B, Nevonen KA, Carbone L, Chavez SL. Single-cell sequencing of primate preimplantation embryos reveals chromosome elimination via cellular fragmentation and blastomere exclusion. Genome Research. PMID 30683754 DOI: 10.1101/Gr.239830.118  0.88
2018 Lazar NH, Nevonen KA, O'Connell B, McCann C, O'Neill RJ, Green RE, Meyer TJ, Okhovat M, Carbone L. Epigenetic maintenance of topological domains in the highly rearranged gibbon genome. Genome Research. PMID 29914971 DOI: 10.1101/Gr.233874.117  0.4
2017 Meyer TJ, Rosenkrantz JL, Carbone L, Chavez SL. Endogenous Retroviruses: With Us and against Us. Frontiers in Chemistry. 5: 23. PMID 28439515 DOI: 10.3389/Fchem.2017.00023  0.88
2017 Vitak SA, Torkenczy KA, Rosenkrantz JL, Fields AJ, Christiansen L, Wong MH, Carbone L, Steemers FJ, Adey A. Sequencing thousands of single-cell genomes with combinatorial indexing. Nature Methods. PMID 28135258 DOI: 10.1038/Nmeth.4154  0.52
2017 Albrecht C, Baker JC, Blundell C, Chavez SL, Carbone L, Chamley L, Hannibal RL, Illsley N, Kurre P, Laurent LC, McKenzie C, Morales-Prieto D, Pantham P, Paquette A, Powell K, et al. IFPA meeting 2016 workshop report I: Genomic communication, bioinformatics, trophoblast biology and transport systems. Placenta. PMID 28108031 DOI: 10.1016/J.Placenta.2017.01.103  0.88
2017 Rosenkrantz JL, Carbone L. Investigating somatic aneuploidy in the brain: why we need a new model. Chromosoma. 126: 337-350. PMID 27638401 DOI: 10.1007/S00412-016-0615-4  0.52
2016 Meyer TJ, Held U, Nevonen KA, Klawitter S, Pirzer T, Carbone L, Schumann GG. The flow of the gibbon LAVA element is facilitated by the LINE-1 retrotransposition machinery. Genome Biology and Evolution. PMID 27635049 DOI: 10.1093/Gbe/Evw224  0.32
2016 Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen K, Carbone L, Tung J. Genome-wide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Molecular Ecology. PMID 27145036 DOI: 10.1111/Mec.13684  0.88
2016 Eckalbar WL, Schlebusch SA, Mason MK, Gill Z, Parker AV, Booker BM, Nishizaki S, Muswamba-Nday C, Terhune E, Nevonen KA, Makki N, Friedrich T, VanderMeer JE, Pollard KS, Carbone L, et al. Transcriptomic and epigenomic characterization of the developing bat wing. Nature Genetics. PMID 27019111 DOI: 10.1038/Ng.3537  0.88
2015 Carbone L, Chavez SL. Mammalian pre-implantation chromosomal instability: species comparison, evolutionary considerations, and pathological correlations. Systems Biology in Reproductive Medicine. 61: 321-35. PMID 26366555 DOI: 10.3109/19396368.2015.1073406  0.88
2015 Veeramah KR, Woerner AE, Johnstone L, Gut I, Gut M, Marques-Bonet T, Carbone L, Wall JD, Hammer MF. Examining phylogenetic relationships among gibbon genera using whole genome sequence data using an approximate bayesian computation approach. Genetics. 200: 295-308. PMID 25769979 DOI: 10.1534/Genetics.115.174425  0.88
2015 Macchia G, Nord KH, Zoli M, Purgato S, D'Addabbo P, Whelan CW, Carbone L, Perini G, Mertens F, Rocchi M, Storlazzi CT. Ring chromosomes, breakpoint clusters, and neocentromeres in sarcomas. Genes, Chromosomes & Cancer. 54: 156-67. PMID 25421174 DOI: 10.1002/Gcc.22228  0.88
2015 Carbone L, Chavez SL. Mammalian pre-implantation chromosomal instability: Species comparison, evolutionary considerations, and pathological correlations Systems Biology in Reproductive Medicine. 61: 321-335. DOI: 10.3109/19396368.2015.1073406  0.88
2014 Carbone L, Harris RA, Gnerre S, Veeramah KR, Lorente-Galdos B, Huddleston J, Meyer TJ, Herrero J, Roos C, Aken B, Anaclerio F, Archidiacono N, Baker C, Barrell D, Batzer MA, et al. Gibbon genome and the fast karyotype evolution of small apes. Nature. 513: 195-201. PMID 25209798 DOI: 10.1038/Nature13679  0.88
2014 Wacholder AC, Cox C, Meyer TJ, Ruggiero RP, Vemulapalli V, Damert A, Carbone L, Pollock DD. Inference of transposable element ancestry. Plos Genetics. 10: e1004482. PMID 25121584 DOI: 10.1371/Journal.Pgen.1004482  0.32
2014 L'Abbate A, Macchia G, D'Addabbo P, Lonoce A, Tolomeo D, Trombetta D, Kok K, Bartenhagen C, Whelan CW, Palumbo O, Severgnini M, Cifola I, Dugas M, Carella M, De Bellis G, ... ... Carbone L, et al. Genomic organization and evolution of double minutes/homogeneously staining regions with MYC amplification in human cancer. Nucleic Acids Research. 42: 9131-45. PMID 25034695 DOI: 10.1093/Nar/Gku590  0.88
2013 Wall JD, Kim SK, Luca F, Carbone L, Mootnick AR, de Jong PJ, Di Rienzo A. Incomplete lineage sorting is common in extant gibbon genera. Plos One. 8: e53682. PMID 23341974 DOI: 10.1371/Journal.Pone.0053682  0.88
2012 Capozzi O, Carbone L, Stanyon RR, Marra A, Yang F, Whelan CW, de Jong PJ, Rocchi M, Archidiacono N. A comprehensive molecular cytogenetic analysis of chromosome rearrangements in gibbons. Genome Research. 22: 2520-8. PMID 22892276 DOI: 10.1101/gr.138651.112  0.88
2012 Meyer TJ, McLain AT, Oldenburg JM, Faulk C, Bourgeois MG, Conlin EM, Mootnick AR, de Jong PJ, Roos C, Carbone L, Batzer MA. An Alu-based phylogeny of gibbons (hylobatidae). Molecular Biology and Evolution. 29: 3441-50. PMID 22683814 DOI: 10.1093/Molbev/Mss149  0.88
2012 Carbone L, Harris RA, Mootnick AR, Milosavljevic A, Martin DI, Rocchi M, Capozzi O, Archidiacono N, Konkel MK, Walker JA, Batzer MA, de Jong PJ. Centromere remodeling in Hoolock leuconedys (Hylobatidae) by a new transposable element unique to the gibbons. Genome Biology and Evolution. 4: 648-58. PMID 22593550 DOI: 10.1093/Gbe/Evs048  0.88
2011 Kim SK, Carbone L, Becquet C, Mootnick AR, Li DJ, de Jong PJ, Wall JD. Patterns of genetic variation within and between Gibbon species. Molecular Biology and Evolution. 28: 2211-8. PMID 21368318 DOI: 10.1093/Molbev/Msr033  0.88
2011 Gentile S, Agrusta M, Guarino G, Carbone L, Cavallaro V, Carucci I, Strollo F. Metabolic consequences of incorrect insulin administration techniques in aging subjects with diabetes. Acta Diabetologica. 48: 121-5. PMID 20091324 DOI: 10.1007/s00592-009-0172-x  0.88
2010 Capra JA, Carbone L, Riesenfeld SJ, Wall JD. Genomics through the lens of next-generation sequencing. Genome Biology. 11: 306. PMID 20587080 DOI: 10.1186/Gb-2010-11-6-306  0.88
2006 Cardone MF, Alonso A, Pazienza M, Ventura M, Montemurro G, Carbone L, de Jong PJ, Stanyon R, D'Addabbo P, Archidiacono N, She X, Eichler EE, Warburton PE, Rocchi M. Independent centromere formation in a capricious, gene-free domain of chromosome 13q21 in Old World monkeys and pigs. Genome Biology. 7: R91. PMID 17040560 DOI: 10.1186/Gb-2006-7-10-R91  0.88
2004 Ventura M, Weigl S, Carbone L, Cardone MF, Misceo D, Teti M, D'Addabbo P, Wandall A, Björck E, de Jong PJ, She X, Eichler EE, Archidiacono N, Rocchi M. Recurrent sites for new centromere seeding. Genome Research. 14: 1696-703. PMID 15342555 DOI: 10.1101/Gr.2608804  0.88
2003 Locke DP, Segraves R, Carbone L, Archidiacono N, Albertson DG, Pinkel D, Eichler EE. Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. Genome Research. 13: 347-57. PMID 12618365 DOI: 10.1101/Gr.1003303  0.88
2002 Carbone L, Ventura M, Tempesta S, Rocchi M, Archidiacono N. Evolutionary history of chromosome 10 in primates Chromosoma. 111: 267-272. PMID 12424526 DOI: 10.1007/S00412-002-0205-5  0.88
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