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Margaret Shun Cheung - Publications

Affiliations: 
2003 University of California, San Diego, La Jolla, CA 
 2003-2006 University of Maryland, College Park, College Park, MD 
 2006- Physics University of Houston, Houston, TX, United States 
 2020- Pacific Northwest National Laboratory, Richland, WA, United States 
Website:
https://www.mscheunglab.org/members
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60 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Mejia-Rodriguez D, Kim H, Sadler N, Li X, Bohutskyi P, Valiev M, Qian WJ, Cheung MS. PTM-Psi: A Python Package to Facilitate the Computational Investigation of Post-Translational Modification on Protein Structures and Their Impacts on Dynamics and Functions. Protein Science : a Publication of the Protein Society. e4822. PMID 37902126 DOI: 10.1002/pro.4822  0.311
2023 Morcos F, Whitford PC, Cheung MS. Biography of José N. Onuchic. The Journal of Physical Chemistry. B. 127: 7556-7557. PMID 37674460 DOI: 10.1021/acs.jpcb.3c05233  0.495
2023 Morcos F, Whitford PC, Cheung MS. Tribute to José N. Onuchic. The Journal of Physical Chemistry. B. 127: 7553-7555. PMID 37674459 DOI: 10.1021/acs.jpcb.3c05234  0.495
2021 Cheung MS, Dima RI, Hyeon C. Tribute to Dave Thirumalai. The Journal of Physical Chemistry. B. 125: 13831-13833. PMID 34965732 DOI: 10.1021/acs.jpcb.1c10029  0.434
2020 Homouz DM, Zegarra F, Wittung-Stafshede PE, Cheung MS. Role of Zero-Order Loop in Protein Unfolding Case Study with Apoazurin Biophysical Journal. 118: 197a. DOI: 10.1016/J.Bpj.2019.11.1191  0.376
2019 Zegarra FC, Homouz D, Gasic A, Babel L, Kovermann M, Wittung-Stafshede P, Cheung MS. Crowding-induced Elongated Conformation of Urea-unfolded Apoazurin: Investigating the Role of Crowder Shape In Silico. The Journal of Physical Chemistry. B. PMID 30963769 DOI: 10.1021/Acs.Jpcb.9B00782  0.324
2019 Homouz DM, Zegarra F, Kovermann M, Gasic AG, Babel L, Wittung-Stafshede PE, Cheung MS. Elongated Denatured Conformation of Apoazurin: Crowding and Urea Interplay Biophysical Journal. 116: 59a. DOI: 10.1016/J.Bpj.2018.11.362  0.341
2019 Cheung MS, Gasic AG, Daugherty C. Protein Structural Fluctuations at Criticality in the Temperature-Pressure-Crowding Folding Phase Diagram Biophysical Journal. 116: 337a. DOI: 10.1016/J.Bpj.2018.11.1834  0.321
2018 Wang Q, Jana B, Diehl MR, Cheung MS, Kolomeisky AB, Onuchic JN. Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins. Proceedings of the National Academy of Sciences of the United States of America. PMID 30224489 DOI: 10.1073/Pnas.1806688115  0.663
2018 Misiura M, Wang Q, Cheung MS, Kolomeisky AB. Correction to "Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins". The Journal of Physical Chemistry. B. PMID 29995413 DOI: 10.1021/Acs.Jpcb.8B06004  0.335
2018 Zegarra FC, Homouz D, Eliaz Y, Gasic AG, Cheung MS. Impact of hydrodynamic interactions on protein folding rates depends on temperature. Physical Review. E. 97: 032402. PMID 29776093 DOI: 10.1103/PhysRevE.97.032402  0.326
2018 Misiura MM, Wang Q, Cheung MS, Kolomeisky AB. Theoretical Investigations of the Role of Mutations in Dynamics of Kinesin Motor Proteins. The Journal of Physical Chemistry. B. PMID 29630822 DOI: 10.1021/Acs.Jpcb.8B00830  0.405
2018 Sun X, Zhang P, Lai Y, Williams KL, Cheung MS, Dunietz BD, Geva E. Computational Study of Charge-Transfer Dynamics in the Carotenoid–Porphyrin–C60Molecular Triad Solvated in Explicit Tetrahydrofuran and Its Spectroscopic Signature The Journal of Physical Chemistry C. 122: 11288-11299. DOI: 10.1021/Acs.Jpcc.8B02697  0.34
2018 Liman J, Eliaz Y, Levine H, Cheung MS. Modeling of Actomyosin Networks with a Molecular Underpinning of Cross-Linker Proteins Biophysical Journal. 114. DOI: 10.1016/J.Bpj.2017.11.803  0.31
2017 Wang Q, Diehl MR, Jana B, Cheung MS, Kolomeisky AB, Onuchic JN. Molecular origin of the weak susceptibility of kinesin velocity to loads and its relation to the collective behavior of kinesins. Proceedings of the National Academy of Sciences of the United States of America. PMID 28973894 DOI: 10.1073/Pnas.1710328114  0.655
2017 Starovoytov ON, Zhang P, Cieplak P, Cheung MS. Induced polarization restricts the conformational distribution of a light-harvesting molecular triad in the ground state. Physical Chemistry Chemical Physics : Pccp. PMID 28815237 DOI: 10.1039/C7Cp03177G  0.727
2017 Wang Q, Cheung M, Diehl M, Onuchic J, Jana B, Kolomeisky A. Cooperativity of Kinesin Motor Proteins under External Loads Biophysical Journal. 112: 426a. DOI: 10.1016/J.Bpj.2016.11.2277  0.657
2015 Tripathi S, Waxham MN, Cheung MS, Liu Y. Lessons in Protein Design from Combined Evolution and Conformational Dynamics. Scientific Reports. 5: 14259. PMID 26388515 DOI: 10.1038/Srep14259  0.414
2015 Tsai MY, Zheng W, Balamurugan D, Schafer NP, Kim BL, Cheung MS, Wolynes PG. Electrostatics, Structure Prediction and the Energy Landscapes for Protein Folding and Binding. Protein Science : a Publication of the Protein Society. PMID 26183799 DOI: 10.1002/Pro.2751  0.42
2015 Hoffman L, Wang X, Sanabria H, Cheung MS, Putkey J, Waxham N. Tuning of Structure-Function Relationships by Macromolecular Crowding Biophysical Journal. 108: 214a. DOI: 10.1016/J.Bpj.2014.11.1183  0.402
2014 Hoffman L, Wang X, Cheung MS, Putkey JA, Waxham MN. The Role of Protein Dynamics in Calmodulin Target Recognition Biophysical Journal. 106: 636a. DOI: 10.1016/J.Bpj.2013.11.3517  0.418
2013 Christiansen A, Wang Q, Cheung MS, Wittung-Stafshede P. Effects of macromolecular crowding agents on protein folding in vitro and in silico. Biophysical Reviews. 5: 137-145. PMID 28510156 DOI: 10.1007/S12551-013-0108-0  0.445
2013 Wang Q, Zhang P, Hoffman L, Tripathi S, Homouz D, Liu Y, Waxham MN, Cheung MS. Protein recognition and selection through conformational and mutually induced fit. Proceedings of the National Academy of Sciences of the United States of America. 110: 20545-50. PMID 24297894 DOI: 10.1073/Pnas.1312788110  0.406
2013 Balamurugan D, Aquino AJ, de Dios F, Flores L, Lischka H, Cheung MS. Multiscale simulation of the ground and photo-induced charge-separated states of a molecular triad in polar organic solvent: exploring the conformations, fluctuations, and free energy landscapes. The Journal of Physical Chemistry. B. 117: 12065-75. PMID 24033226 DOI: 10.1021/Jp4026927  0.372
2013 Cheung MS. Where soft matter meets living matter--protein structure, stability, and folding in the cell. Current Opinion in Structural Biology. 23: 212-7. PMID 23474325 DOI: 10.1016/J.Sbi.2013.02.005  0.422
2012 Wang Q, Cheung MS. A physics-based approach of coarse-graining the cytoplasm of Escherichia coli (CGCYTO). Biophysical Journal. 102: 2353-61. PMID 22677389 DOI: 10.1016/J.Bpj.2012.04.010  0.309
2012 Kudlay A, Cheung MS, Thirumalai D. Influence of the shape of crowding particles on the structural transitions in a polymer. The Journal of Physical Chemistry. B. 116: 8513-22. PMID 22616622 DOI: 10.1021/Jp212535N  0.434
2011 Wang Q, Christiansen A, Samiotakis A, Wittung-Stafshede P, Cheung MS. Comparison of chemical and thermal protein denaturation by combination of computational and experimental approaches. II. The Journal of Chemical Physics. 135: 175102. PMID 22070324 DOI: 10.1016/J.Bpj.2011.11.2510  0.345
2011 Samiotakis A, Cheung MS. Folding dynamics of Trp-cage in the presence of chemical interference and macromolecular crowding. I. The Journal of Chemical Physics. 135: 175101. PMID 22070323 DOI: 10.1063/1.3656691  0.469
2011 Wang Q, Liang KC, Czader A, Waxham MN, Cheung MS. The effect of macromolecular crowding, ionic strength and calcium binding on calmodulin dynamics. Plos Computational Biology. 7: e1002114. PMID 21829336 DOI: 10.1371/Journal.Pcbi.1002114  0.34
2011 Homouz D, Samiotakis A, Cheung M. Multi-Scale Simulations of Proteins in Different Solvent Conditions Biophysical Journal. 100: 614a. DOI: 10.1016/J.Bpj.2010.12.3536  0.435
2011 Scoppa M, Cheung M. Molecular Modeling of the ATP-Synthase Motor F0 Subunit of Escherichia Coli and Proton Translocation Biophysical Journal. 100: 544a. DOI: 10.1016/J.Bpj.2010.12.3169  0.336
2011 Wang Q, Samiotakis A, Cheung M. Size and Shape of Crowders Affect the Folding Landscape of Cytochrome C Biophysical Journal. 100: 210a. DOI: 10.1016/J.Bpj.2010.12.1357  0.432
2010 Dhar A, Samiotakis A, Ebbinghaus S, Nienhaus L, Homouz D, Gruebele M, Cheung MS. Structure, function, and folding of phosphoglycerate kinase are strongly perturbed by macromolecular crowding. Proceedings of the National Academy of Sciences of the United States of America. 107: 17586-91. PMID 20921368 DOI: 10.1073/Pnas.1006760107  0.371
2010 Christiansen A, Wang Q, Samiotakis A, Cheung MS, Wittung-Stafshede P. Factors defining effects of macromolecular crowding on protein stability: an in vitro/in silico case study using cytochrome c. Biochemistry. 49: 6519-30. PMID 20593812 DOI: 10.1016/J.Bpj.2010.12.2354  0.396
2010 Samiotakis A, Homouz D, Cheung MS. Multiscale investigation of chemical interference in proteins. The Journal of Chemical Physics. 132: 175101. PMID 20459186 DOI: 10.1063/1.3404401  0.42
2010 Stagg L, Samiotakis A, Homouz D, Cheung MS, Wittung-Stafshede P. Residue-specific analysis of frustration in the folding landscape of repeat beta/alpha protein apoflavodoxin. Journal of Molecular Biology. 396: 75-89. PMID 19913555 DOI: 10.1016/J.Jmb.2009.11.008  0.342
2010 Miller JH, Maric S, Infante HL, Scoppa M, Cheung MS, Claycomb JR. Electric Field Driven Torque in ATP Synthase Biophysical Journal. 98. DOI: 10.1016/J.Bpj.2009.12.4025  0.306
2010 Samiotakis A, Stagg L, Homouz D, Cheung MS, Wittung-Stafshede P. Residue Specific Analysis of Frustration in Folding Landscape of Repeat Alpha/Beta Protein Apoflavodoxin Biophysical Journal. 98: 200a. DOI: 10.1016/J.Bpj.2009.12.1066  0.377
2010 Cheung MS. Protein Structure, Stability and Folding in the Cell - in Silico Biophysical Approaches Biophysical Journal. 98: 4a. DOI: 10.1016/J.Bpj.2009.12.025  0.407
2009 Homouz D, Sanabria H, Waxham MN, Cheung MS. Modulation of calmodulin plasticity by the effect of macromolecular crowding. Journal of Molecular Biology. 391: 933-43. PMID 19577574 DOI: 10.1016/J.Jmb.2009.06.073  0.422
2009 Kudlay A, Cheung MS, Thirumalai D. Crowding effects on the structural transitions in a flexible helical homopolymer. Physical Review Letters. 102: 118101. PMID 19392239 DOI: 10.1103/Physrevlett.102.118101  0.462
2009 Samiotakis A, Wittung-Stafshede P, Cheung MS. Folding, stability and shape of proteins in crowded environments: experimental and computational approaches. International Journal of Molecular Sciences. 10: 572-88. PMID 19333422 DOI: 10.3390/Ijms10020572  0.416
2009 Homouz D, Stagg L, Wittung-Stafshede P, Cheung MS. Macromolecular crowding modulates folding mechanism of alpha/beta protein apoflavodoxin. Biophysical Journal. 96: 671-80. PMID 19167312 DOI: 10.1016/J.Bpj.2008.10.014  0.413
2009 Samiotakis A, Cheung MS, Homouz D. Scaal: A Robust, Accurate, And High-efficient All-atomistic Protein Reconstruction Method From Low-resolution Protein Models Biophysical Journal. 96: 405a. DOI: 10.1016/J.Bpj.2008.12.2063  0.374
2008 Homouz D, Perham M, Samiotakis A, Cheung MS, Wittung-Stafshede P. Crowded, cell-like environment induces shape changes in aspherical protein. Proceedings of the National Academy of Sciences of the United States of America. 105: 11754-9. PMID 18697933 DOI: 10.1073/Pnas.0803672105  0.403
2007 Stagg L, Zhang SQ, Cheung MS, Wittung-Stafshede P. Molecular crowding enhances native structure and stability of alpha/beta protein flavodoxin. Proceedings of the National Academy of Sciences of the United States of America. 104: 18976-81. PMID 18024596 DOI: 10.1073/Pnas.0705127104  0.411
2007 Zhang SQ, Cheung MS. Manipulating biopolymer dynamics by anisotropic nanoconfinement. Nano Letters. 7: 3438-42. PMID 17939726 DOI: 10.1021/Nl071948V  0.391
2007 Sardiu ME, Cheung MS, Yu YK. Cysteine-cysteine contact preference leads to target-focusing in protein folding. Biophysical Journal. 93: 938-51. PMID 17617551 DOI: 10.1529/Biophysj.106.097824  0.41
2007 Cheung MS, Thirumalai D. Effects of crowding and confinement on the structures of the transition state ensemble in proteins. The Journal of Physical Chemistry. B. 111: 8250-7. PMID 17585794 DOI: 10.1021/Jp068201Y  0.566
2006 Cheung MS, Thirumalai D. Nanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces. Journal of Molecular Biology. 357: 632-43. PMID 16427652 DOI: 10.1016/J.Jmb.2005.12.048  0.529
2005 Chahine J, Cheung MS. Computational studies of the reversible domain swapping of p13suc1. Biophysical Journal. 89: 2693-700. PMID 16055542 DOI: 10.1529/Biophysj.105.062679  0.392
2005 Cheung MS, Klimov D, Thirumalai D. Molecular crowding enhances native state stability and refolding rates of globular proteins. Proceedings of the National Academy of Sciences of the United States of America. 102: 4753-8. PMID 15781864 DOI: 10.1073/Pnas.0409630102  0.515
2004 Yang S, Cho SS, Levy Y, Cheung MS, Levine H, Wolynes PG, Onuchic JN. Domain swapping is a consequence of minimal frustration. Proceedings of the National Academy of Sciences of the United States of America. 101: 13786-91. PMID 15361578 DOI: 10.1073/Pnas.0403724101  0.723
2004 Finke JM, Cheung MS, Onuchic JN. A structural model of polyglutamine determined from a host-guest method combining experiments and landscape theory. Biophysical Journal. 87: 1900-18. PMID 15345567 DOI: 10.1529/Biophysj.104.041533  0.533
2004 Fernández-Escamilla AM, Cheung MS, Vega MC, Wilmanns M, Onuchic JN, Serrano L. Solvation in protein folding analysis: combination of theoretical and experimental approaches. Proceedings of the National Academy of Sciences of the United States of America. 101: 2834-9. PMID 14978284 DOI: 10.1073/Pnas.0304180101  0.576
2004 Cheung MS, Chavez LL, Onuchic JN. The energy landscape for protein folding and possible connections to function Polymer. 45: 547-555. DOI: 10.1016/J.Polymer.2003.10.082  0.722
2003 Cheung MS, Finke JM, Callahan B, Onuchic JN. Exploring the interplay between topology and secondary structural formation in the protein folding problem Journal of Physical Chemistry B. 107: 11193-11200. DOI: 10.1021/Jp034441R  0.57
2002 Cheung MS, García AE, Onuchic JN. Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse. Proceedings of the National Academy of Sciences of the United States of America. 99: 685-90. PMID 11805324 DOI: 10.1073/Pnas.022387699  0.574
2002 Guo C, Cheung MS, Levine H, Kessler DA. Mechanisms of cooperativity underlying sequence-independent β-sheet formation Journal of Chemical Physics. 116: 4353-4365. DOI: 10.1063/1.1448493  0.379
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