Thomas Bartol - Publications

Affiliations: 
Salk Institute for Biological Studies, La Jolla, CA, United States 

53 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2022 Garcia JW, Bartol TM, Sejnowski TJ. Multiscale modeling of presynaptic dynamics from molecular to mesoscale. Plos Computational Biology. 18: e1010068. PMID 35533198 DOI: 10.1371/journal.pcbi.1010068  0.575
2021 Wagner M, Bartol TM, Sejnowski TJ, Cauwenberghs G. Markov Chain Abstractions of Electrochemical Reaction-Diffusion in Synaptic Transmission for Neuromorphic Computing. Frontiers in Neuroscience. 15: 698635. PMID 34912188 DOI: 10.3389/fnins.2021.698635  0.477
2021 Mendelsohn R, Garcia GC, Bartol TM, Lee CT, Khandelwal P, Liu E, Spencer DJ, Husar A, Bushong EA, Phan S, Perkins G, Ellisman MH, Skupin A, Sejnowski TJ, Rangamani P. Morphological principles of neuronal mitochondria. The Journal of Comparative Neurology. PMID 34608995 DOI: 10.1002/cne.25254  0.388
2021 Singh N, Bartol T, Levine H, Sejnowski T, Nadkarni S. Author Correction: Presynaptic endoplasmic reticulum regulates short-term plasticity in hippocampal synapses. Communications Biology. 4: 969. PMID 34376760 DOI: 10.1038/s42003-021-02519-x  0.72
2021 Compans B, Camus C, Kallergi E, Sposini S, Martineau M, Butler C, Kechkar A, Klaassen RV, Retailleau N, Sejnowski TJ, Smit AB, Sibarita JB, Bartol TM, Perrais D, Nikoletopoulou V, et al. NMDAR-dependent long-term depression is associated with increased short term plasticity through autophagy mediated loss of PSD-95. Nature Communications. 12: 2849. PMID 33990590 DOI: 10.1038/s41467-021-23133-9  0.519
2021 Singh N, Bartol T, Levine H, Sejnowski T, Nadkarni S. Presynaptic endoplasmic reticulum regulates short-term plasticity in hippocampal synapses. Communications Biology. 4: 241. PMID 33623091 DOI: 10.1038/s42003-021-01761-7  0.756
2020 Haas KT, Compans B, Letellier M, Bartol TM, Grillo-Bosch D, Sejnowski TJ, Sainlos M, Choquet D, Thoumine O, Hosy E. Correction: Pre-post synaptic alignment through neuroligin-1 tunes synaptic transmission efficiency. Elife. 9. PMID 33325824 DOI: 10.7554/eLife.65689  0.515
2020 Ordyan M, Bartol T, Kennedy M, Rangamani P, Sejnowski T. Interactions between calmodulin and neurogranin govern the dynamics of CaMKII as a leaky integrator. Plos Computational Biology. 16: e1008015. PMID 32678848 DOI: 10.1371/Journal.Pcbi.1008015  0.612
2019 Pharris MC, Patel NM, VanDyk TG, Bartol TM, Sejnowski TJ, Kennedy MB, Stefan MI, Kinzer-Ursem TL. A Multi-State Model of the CaMKII Dodecamer Suggests a Role for Calmodulin in Maintenance of Autophosphorylation. Plos Computational Biology. 15: e1006941. PMID 31869343 DOI: 10.1371/Journal.Pcbi.1006941  0.514
2019 Jullié D, Stoeber M, Sibarita JB, Zieger HL, Bartol TM, Arttamangkul S, Sejnowski TJ, Hosy E, von Zastrow M. A Discrete Presynaptic Vesicle Cycle for Neuromodulator Receptors. Neuron. PMID 31837915 DOI: 10.1016/J.Neuron.2019.11.016  0.418
2019 Garcia GC, Bartol TM, Phan S, Bushong EA, Perkins G, Sejnowski TJ, Ellisman MH, Skupin A. Mitochondrial morphology provides a mechanism for energy buffering at synapses. Scientific Reports. 9: 18306. PMID 31797946 DOI: 10.1038/S41598-019-54159-1  0.417
2019 Cugno A, Bartol TM, Sejnowski TJ, Iyengar R, Rangamani P. Geometric principles of second messenger dynamics in dendritic spines. Scientific Reports. 9: 11676. PMID 31406140 DOI: 10.1038/S41598-019-48028-0  0.525
2019 Ernst OK, Bartol TM, Sejnowski TJ, Mjolsness E. Learning moment closure in reaction-diffusion systems with spatial dynamic Boltzmann distributions. Physical Review. E. 99: 063315. PMID 31330605 DOI: 10.1103/Physreve.99.063315  0.384
2019 Bell M, Bartol T, Sejnowski T, Rangamani P. Dendritic spine geometry and spine apparatus organization govern the spatiotemporal dynamics of calcium. The Journal of General Physiology. PMID 31324651 DOI: 10.1085/Jgp.201812261  0.574
2019 Tapia JJ, Saglam AS, Czech J, Kuczewski R, Bartol TM, Sejnowski TJ, Faeder JR. MCell-R: A Particle-Resolution Network-Free Spatial Modeling Framework. Methods in Molecular Biology (Clifton, N.J.). 1945: 203-229. PMID 30945248 DOI: 10.1007/978-1-4939-9102-0_9  0.423
2019 Mjolsness E, Ernst OK, Bartol TM, Sejnowski TJ. Some Prospects for Artificial Intelligence (Both Numeric and Symbolic) in Multiscale Biophysics Biophysical Journal. 116: 323a. DOI: 10.1016/J.Bpj.2018.11.1753  0.329
2019 Rangamani P, Bell M, Cugno A, Ohadi D, Bartol TM, Iyengar R, Sejnowski TJ. Dendritic Spine Geometry and Ultrastructure Dictate the Spatiotemporal Dynamics of Second Messengers Biophysical Journal. 116: 304a. DOI: 10.1016/J.Bpj.2018.11.1651  0.432
2018 Haas KT, Compans B, Letellier M, Bartol TM, Grillo-Bosch D, Sejnowski TJ, Sainlos M, Choquet D, Thoumine O, Hosy E. Pre-post synaptic alignment through neuroligin-1 tunes synaptic transmission efficiency. Elife. 7. PMID 30044218 DOI: 10.7554/Elife.31755  0.557
2018 Ernst OK, Bartol T, Sejnowski T, Mjolsness E. Learning dynamic Boltzmann distributions as reduced models of spatial chemical kinetics. The Journal of Chemical Physics. 149: 034107. PMID 30037235 DOI: 10.1063/1.5026403  0.453
2018 Ruiz-Martínez Á, Bartol TM, Sejnowski TJ, Tartakovsky DM. Efficient models of polymerization applied to FtsZ ring assembly in . Proceedings of the National Academy of Sciences of the United States of America. PMID 29686085 DOI: 10.1073/Pnas.1719391115  0.375
2018 Bromer C, Bartol TM, Bowden JB, Hubbard DD, Hanka DC, Gonzalez PV, Kuwajima M, Mendenhall JM, Parker PH, Abraham WC, Sejnowski TJ, Harris KM. Long-term potentiation expands information content of hippocampal dentate gyrus synapses. Proceedings of the National Academy of Sciences of the United States of America. PMID 29463730 DOI: 10.1073/Pnas.1716189115  0.539
2018 Hirakis SP, Bartol TM, Sejnowski TJ, Amaro RE. Molecules to Membranes: The Calcium Release Unit Biophysical Journal. 114: 118a. DOI: 10.1016/J.Bpj.2017.11.678  0.429
2017 Hirakis SP, Bartol TM, Sejnowski TJ, Amaro RE. Particle-Based Approaches to Clearing Calcium: a Protein Landscape Model of the Sarco/Endoplasmic Reticulum Calcium-ATPase (SERCA) Pump for Sub-Cellular Stochastic Models Biophysical Journal. 112: 484a. DOI: 10.1016/J.Bpj.2016.11.2618  0.446
2016 Ruiz-Martinez A, Bartol TM, Sejnowski TJ, Tartakovsky DM. Efficient Multiscale Models of Polymer Assembly. Biophysical Journal. 111: 185-196. PMID 27410746 DOI: 10.1016/J.Bpj.2016.05.022  0.391
2015 Bartol TM, Bromer C, Kinney JP, Chirillo MA, Bourne JN, Harris KM, Sejnowski TJ. Nanoconnectomic upper bound on the variability of synaptic plasticity. Elife. 4. PMID 26618907 DOI: 10.7554/eLife.10778  0.534
2015 Bartol TM, Keller DX, Kinney JP, Bajaj CL, Harris KM, Sejnowski TJ, Kennedy MB. Computational reconstitution of spine calcium transients from individual proteins. Frontiers in Synaptic Neuroscience. 7: 17. PMID 26500546 DOI: 10.3389/Fnsyn.2015.00017  0.481
2015 Johnson T, Bartol T, Sejnowski T, Mjolsness E. Model reduction for stochastic CaMKII reaction kinetics in synapses by graph-constrained correlation dynamics. Physical Biology. 12: 045005. PMID 26086598 DOI: 10.1088/1478-3975/12/4/045005  0.553
2014 Stefan MI, Bartol TM, Sejnowski TJ, Kennedy MB. Multi-state modeling of biomolecules. Plos Computational Biology. 10: e1003844. PMID 25254957 DOI: 10.1371/Journal.Pcbi.1003844  0.399
2014 Edwards J, Daniel E, Kinney J, Bartol T, Sejnowski T, Johnston D, Harris K, Bajaj C. VolRoverN: enhancing surface and volumetric reconstruction for realistic dynamical simulation of cellular and subcellular function. Neuroinformatics. 12: 277-89. PMID 24100964 DOI: 10.1007/S12021-013-9205-2  0.443
2013 Regner BM, Vu?ini? D, Domnisoru C, Bartol TM, Hetzer MW, Tartakovsky DM, Sejnowski TJ. Anomalous diffusion of single particles in cytoplasm. Biophysical Journal. 104: 1652-60. PMID 23601312 DOI: 10.1016/J.Bpj.2013.01.049  0.363
2013 Kinney JP, Spacek J, Bartol TM, Bajaj CL, Harris KM, Sejnowski TJ. Extracellular sheets and tunnels modulate glutamate diffusion in hippocampal neuropil. The Journal of Comparative Neurology. 521: 448-64. PMID 22740128 DOI: 10.1002/Cne.23181  0.465
2013 Nadkarni S, Bartol T, Levine H, Sejnowski T. Activity dependent modulation of synaptic transmission by presynaptic calcium stores: A dichotomy of short-term depression and facilitation Bmc Neuroscience. 14. DOI: 10.1186/1471-2202-14-S1-P351  0.731
2012 Nadkarni S, Bartol TM, Stevens CF, Sejnowski TJ, Levine H. Short-term plasticity constrains spatial organization of a hippocampal presynaptic terminal. Proceedings of the National Academy of Sciences of the United States of America. 109: 14657-62. PMID 22908295 DOI: 10.1073/Pnas.1211971109  0.738
2012 Stefan MI, Pepke S, Mihalas S, Bartol T, Sejnowski TJ, Kennedy MB. Modelling Ca2+ -dependent proteins in the spine - challenges and solutions F1000research. 3. DOI: 10.7490/F1000Research.1092544.1  0.547
2012 Nadkarni S, Sejnowski T, Bartol T, Stevens C, Levine H, Harris K, Ennedy E. Effects of Presynaptic Calcium Stores on Short-Term Synaptic Plasticity Biophysical Journal. 102: 670a. DOI: 10.1016/J.Bpj.2011.11.3650  0.736
2010 Nadkarni S, Bartol TM, Sejnowski TJ, Levine H. Modelling vesicular release at hippocampal synapses. Plos Computational Biology. 6: e1000983. PMID 21085682 DOI: 10.1371/Journal.Pcbi.1000983  0.718
2010 Coggan JS, Prescott SA, Bartol TM, Sejnowski TJ. Imbalance of ionic conductances contributes to diverse symptoms of demyelination. Proceedings of the National Academy of Sciences of the United States of America. 107: 20602-9. PMID 20974975 DOI: 10.1073/Pnas.1013798107  0.339
2010 Modchang C, Nadkarni S, Bartol TM, Triampo W, Sejnowski TJ, Levine H, Rappel WJ. A comparison of deterministic and stochastic simulations of neuronal vesicle release models. Physical Biology. 7: 026008. PMID 20505227 DOI: 10.1088/1478-3975/7/2/026008  0.686
2009 Nadkarni S, Bartol T, Sejnowski T, Levine H. MCell Model of Presynaptic Calcium Dynamics Predicts the Structural Correlates of Short-term Synaptic Plasticity Biophysical Journal. 96: 659a. DOI: 10.1016/J.Bpj.2008.12.3482  0.736
2009 Coggan JS, Bartol TM, Sejnowski TJ. New Metrics of Intrinsic Axonal Excitability from a Computational Model of Demyelination Biophysical Journal. 96: 480a. DOI: 10.1016/J.Bpj.2008.12.2476  0.344
2008 Kerr RA, Bartol TM, Kaminsky B, Dittrich M, Chang JC, Baden SB, Sejnowski TJ, Stiles JR. FAST MONTE CARLO SIMULATION METHODS FOR BIOLOGICAL REACTION-DIFFUSION SYSTEMS IN SOLUTION AND ON SURFACES. Siam Journal On Scientific Computing : a Publication of the Society For Industrial and Applied Mathematics. 30: 3126. PMID 20151023 DOI: 10.1137/070692017  0.398
2008 Lopreore CL, Bartol TM, Coggan JS, Keller DX, Sosinsky GE, Ellisman MH, Sejnowski TJ. Computational modeling of three-dimensional electrodiffusion in biological systems: application to the node of Ranvier. Biophysical Journal. 95: 2624-35. PMID 18556758 DOI: 10.1529/Biophysj.108.132167  0.39
2008 Keller DX, Franks KM, Bartol TM, Sejnowski TJ. Calmodulin activation by calcium transients in the postsynaptic density of dendritic spines. Plos One. 3: e2045. PMID 18446197 DOI: 10.1371/Journal.Pone.0002045  0.562
2007 Baden SB, Sejnowski TJ, Bartol TM, Stiles J. Toward petascale simulation of cellular microphysiology Proceedings of the 7th Ieee International Conference On Bioinformatics and Bioengineering, Bibe. 628-634. DOI: 10.1109/BIBE.2007.4375626  0.371
2006 Vucini? D, Bartol TM, Sejnowski TJ. Hybrid reflecting objectives for functional multiphoton microscopy in turbid media. Optics Letters. 31: 2447-9. PMID 16880851 DOI: 10.1364/Ol.31.002447  0.324
2006 Vučinić D, Bartol TM, Sejnowski TJ. Hybrid reflecting objectives for deep-tissue functional two-photon imaging Proceedings of Spie - the International Society For Optical Engineering. 6288. DOI: 10.1117/12.680952  0.333
2005 Coggan JS, Bartol TM, Esquenazi E, Stiles JR, Lamont S, Martone ME, Berg DK, Ellisman MH, Sejnowski TJ. Evidence for ectopic neurotransmission at a neuronal synapse. Science (New York, N.Y.). 309: 446-51. PMID 16020730 DOI: 10.1126/Science.1108239  0.552
2004 Casanova H, Berman F, Bartol T, Gokcay E, Sejnowski T, Birnbaum A, Dongarra J, Miller M, Ellisman M, Faerman M, Obertelli G, Wolski R, Pomerantz S, Stiles J. THE VIRTUAL INSTRUMENT: SUPPORT FOR GRID-ENABLED MCELL SIMULATIONS. The International Journal of High Performance Computing Applications. 18: 3-17. PMID 20689618 DOI: 10.1177/1094342004041290  0.358
2004 Stiles JR, Ford WC, Pattillo JM, Deerinck TE, Ellisman MH, Bartol TM, Sejnowski TJ. Spatially realistic computational physiology: Past, present and future Advances in Parallel Computing. 13: 685-694. DOI: 10.1016/S0927-5452(04)80085-6  0.357
2004 Balls GT, Baden SB, Kispersky T, Bartol TM, Sejnowski TJ. A large scale Monte Carlo simulator for cellular microphysiology Proceedings - International Parallel and Distributed Processing Symposium, Ipdps 2004 (Abstracts and Cd-Rom). 18: 561-570.  0.371
2002 Franks KM, Bartol TM, Sejnowski TJ. A Monte Carlo model reveals independent signaling at central glutamatergic synapses. Biophysical Journal. 83: 2333-48. PMID 12414671 DOI: 10.1016/S0006-3495(02)75248-X  0.482
2001 Franks KM, Bartol TM, Sejnowski TJ. An MCell model of calcium dynamics and frequency-dependence of calmodulin activation in dendritic spines Neurocomputing. 38: 9-16. DOI: 10.1016/S0925-2312(01)00415-5  0.531
1991 Bartol TM, Land BR, Salpeter EE, Salpeter MM. Monte Carlo simulation of miniature endplate current generation in the vertebrate neuromuscular junction. Biophysical Journal. 59: 1290-307. PMID 1873466 DOI: 10.1016/S0006-3495(91)82344-X  0.325
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