| Year |
Citation |
Score |
| 2024 |
Sun L, David KT, Wolters JF, Karlen SD, Gonçalves C, Opulente DA, LaBella AL, Groenewald M, Zhou X, Shen XX, Rokas A, Hittinger CT. Functional and evolutionary integration of a fungal gene with a bacterial operon. Molecular Biology and Evolution. PMID 38415839 DOI: 10.1093/molbev/msae045 |
0.708 |
|
| 2024 |
David KT, Harrison MC, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Pennell M, Hittinger CT, Rokas A. Saccharomycotina yeasts defy long-standing macroecological patterns. Proceedings of the National Academy of Sciences of the United States of America. 121: e2316031121. PMID 38412132 DOI: 10.1073/pnas.2316031121 |
0.682 |
|
| 2024 |
Pontes A, Paraíso F, Liu YC, Limtong S, Jindamorakot S, Jespersen L, Gonçalves C, Rosa CA, Tsai IJ, Rokas A, Hittinger CT, Gonçalves P, Sampaio JP. Tracking alternative versions of the galactose gene network in the genus and their expansion after domestication. Iscience. 27: 108987. PMID 38333711 DOI: 10.1016/j.isci.2024.108987 |
0.635 |
|
| 2024 |
Chavez CM, Groenewald M, Hulfachor AB, Kpurubu G, Huerta R, Hittinger CT, Rokas A. The cell morphological diversity of Saccharomycotina yeasts. Fems Yeast Research. 24. PMID 38142225 DOI: 10.1093/femsyr/foad055 |
0.667 |
|
| 2023 |
Wolters JF, LaBella AL, Opulente DA, Rokas A, Hittinger CT. Mitochondrial genome diversity across the subphylum Saccharomycotina. Frontiers in Microbiology. 14: 1268944. PMID 38075892 DOI: 10.3389/fmicb.2023.1268944 |
0.826 |
|
| 2023 |
Opulente DA, Langdon QK, Jarzyna M, Buh KV, Haase MAB, Groenewald M, Hittinger CT. Taxogenomic analysis of a novel yeast species isolated from soil, Pichia galeolata sp. nov. Yeast (Chichester, England). PMID 37921542 DOI: 10.1002/yea.3905 |
0.839 |
|
| 2023 |
Santos ARO, Barros KO, Batista TM, Souza GFL, Alvarenga FBM, Abegg MA, Sato TK, Hittinger CT, Lachance MA, Rosa CA. sp. nov., a predacious yeast isolated from soil and rotten wood in an Amazonian rainforest biome. International Journal of Systematic and Evolutionary Microbiology. 73. PMID 37905527 DOI: 10.1099/ijsem.0.006125 |
0.32 |
|
| 2023 |
Gonçalves C, Harrison MC, Steenwyk JL, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Hittinger CT, Rokas A. Diverse signatures of convergent evolution in cacti-associated yeasts. Biorxiv : the Preprint Server For Biology. PMID 37745407 DOI: 10.1101/2023.09.14.557833 |
0.841 |
|
| 2023 |
David KT, Harrison MC, Opulente DA, LaBella AL, Wolters JF, Zhou X, Shen XX, Groenewald M, Pennell M, Hittinger CT, Rokas A. Saccharomycotina yeasts defy longstanding macroecological patterns. Biorxiv : the Preprint Server For Biology. PMID 37693602 DOI: 10.1101/2023.08.29.555417 |
0.815 |
|
| 2023 |
Wolters JF, LaBella AL, Opulente DA, Rokas A, Hittinger CT. Mitochondrial Genome Diversity across the Subphylum Saccharomycotina. Biorxiv : the Preprint Server For Biology. PMID 37577532 DOI: 10.1101/2023.07.28.551029 |
0.831 |
|
| 2023 |
Opulente DA, LaBella AL, Harrison MC, Wolters JF, Liu C, Li Y, Kominek J, Steenwyk JL, Stoneman HR, VanDenAvond J, Miller CR, Langdon QK, Silva M, Gonçalves C, Ubbelohde EJ, ... ... Hittinger CT, et al. Genomic and ecological factors shaping specialism and generalism across an entire subphylum. Biorxiv : the Preprint Server For Biology. PMID 37425695 DOI: 10.1101/2023.06.19.545611 |
0.833 |
|
| 2023 |
Nalabothu RL, Fisher KJ, LaBella AL, Meyer TA, Opulente DA, Wolters JF, Rokas A, Hittinger CT. Codon optimization improves the prediction of xylose metabolism from gene content in budding yeasts. Molecular Biology and Evolution. PMID 37154525 DOI: 10.1093/molbev/msad111 |
0.836 |
|
| 2023 |
Parra M, Libkind D, Hittinger CT, Álvarez L, Bellora N. Assembly and comparative genome analysis of a Patagonian Aureobasidium pullulans isolate reveals unexpected intraspecific variation. Yeast (Chichester, England). PMID 37114349 DOI: 10.1002/yea.3853 |
0.444 |
|
| 2023 |
Peris D, Ubbelohde EJ, Kuang MC, Kominek J, Langdon QK, Adams M, Koshalek JA, Hulfachor AB, Opulente DA, Hall DJ, Hyma K, Fay JC, Leducq JB, Charron G, Landry CR, ... ... Hittinger CT, et al. Macroevolutionary diversity of traits and genomes in the model yeast genus Saccharomyces. Nature Communications. 14: 690. PMID 36755033 DOI: 10.1038/s41467-023-36139-2 |
0.848 |
|
| 2022 |
Gabaldón T, Hittinger CT. Editorial: Genomic insights on fungal hybrids. Frontiers in Fungal Biology. 3: 1063609. PMID 37746239 DOI: 10.3389/ffunb.2022.1063609 |
0.337 |
|
| 2022 |
Barros KO, Alvarenga FBM, Magni G, Souza GFL, Abegg MA, Palladino F, da Silva SS, Rodrigues RCLB, Sato TK, Hittinger CT, Rosa CA. The Brazilian Amazonian rainforest harbors a high diversity of yeasts associated with rotting wood, including many candidates for new yeast species. Yeast (Chichester, England). PMID 36582015 DOI: 10.1002/yea.3837 |
0.312 |
|
| 2022 |
Li Y, Liu H, Steenwyk JL, LaBella AL, Harrison MC, Groenewald M, Zhou X, Shen XX, Zhao T, Hittinger CT, Rokas A. Contrasting modes of macro and microsynteny evolution in a eukaryotic subphylum. Current Biology : Cb. PMID 36334587 DOI: 10.1016/j.cub.2022.10.025 |
0.741 |
|
| 2022 |
Krause DJ, Hittinger CT. Functional divergence in a multi-gene family is a key evolutionary innovation for anaerobic growth in Saccharomyces cerevisiae. Molecular Biology and Evolution. PMID 36134526 DOI: 10.1093/molbev/msac202 |
0.323 |
|
| 2022 |
Vanacloig-Pedros E, Fisher KJ, Liu L, Debrauske DJ, Young MKM, Place M, Hittinger CT, Sato TK, Gasch AP. Comparative chemical genomic profiling across plant-based hydrolysate toxins reveals widespread antagonism in fitness contributions. Fems Yeast Research. PMID 35883225 DOI: 10.1093/femsyr/foac036 |
0.347 |
|
| 2022 |
Steenwyk JL, Phillips MA, Yang F, Date SS, Graham TR, Berman J, Hittinger CT, Rokas A. An orthologous gene coevolution network provides insight into eukaryotic cellular and genomic structure and function. Science Advances. 8: eabn0105. PMID 35507651 DOI: 10.1126/sciadv.abn0105 |
0.694 |
|
| 2022 |
Mozzachiodi S, Bai FY, Baldrian P, Bell G, Boundy-Mills K, Buzzini P, Čadež N, Cubillos FA, Dashko S, Dimitrov R, Fisher KJ, Gibson B, Gouliamova D, Greig D, Heistinger L, ... Hittinger CT, et al. Yeasts from temperate forests. Yeast (Chichester, England). PMID 35146791 DOI: 10.1002/yea.3699 |
0.702 |
|
| 2021 |
Spurley WJ, Fisher KJ, Langdon QK, Buh KV, Jarzyna M, Haase MAB, Sylvester K, Moriarty RV, Rodriguez D, Sheddan A, Wright S, Sorlie L, Hulfachor AB, Opulente DA, Hittinger CT. Substrate, temperature, and geographical patterns among nearly 2000 natural yeast isolates. Yeast (Chichester, England). PMID 34741351 DOI: 10.1002/yea.3679 |
0.804 |
|
| 2021 |
LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Correction: Variation and selection on codon usage bias across an entire subphylum. Plos Genetics. 17: e1009824. PMID 34570754 DOI: 10.1371/journal.pgen.1009824 |
0.756 |
|
| 2021 |
Harrison MC, LaBella AL, Hittinger CT, Rokas A. The evolution of the GALactose utilization pathway in budding yeasts. Trends in Genetics : Tig. PMID 34538504 DOI: 10.1016/j.tig.2021.08.013 |
0.695 |
|
| 2021 |
Čadež N, Bellora N, Ulloa R, Tome M, Petković H, Groenewald M, Hittinger CT, Libkind D. sp. nov., a Novel Apiculate Yeast Species From Patagonian Forests That Lacks the Typical Genomic Domestication Signatures for Fermentative Environments. Frontiers in Microbiology. 12: 679894. PMID 34367085 DOI: 10.3389/fmicb.2021.679894 |
0.48 |
|
| 2021 |
LaBella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Signatures of optimal codon usage in metabolic genes inform budding yeast ecology. Plos Biology. 19: e3001185. PMID 33872297 DOI: 10.1371/journal.pbio.3001185 |
0.829 |
|
| 2021 |
O'Brien CE, Oliveira-Pacheco J, Ó Cinnéide E, Haase MAB, Hittinger CT, Rogers TR, Zaragoza O, Bond U, Butler G. Population genomics of the pathogenic yeast Candida tropicalis identifies hybrid isolates in environmental samples. Plos Pathogens. 17: e1009138. PMID 33788904 DOI: 10.1371/journal.ppat.1009138 |
0.681 |
|
| 2021 |
Haase MAB, Kominek J, Opulente DA, Shen XX, LaBella AL, Zhou X, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Repeated horizontal gene transfer of GALactose metabolism genes violates Dollo's law of irreversible loss. Genetics. 217. PMID 33724406 DOI: 10.1093/genetics/iyaa012 |
0.828 |
|
| 2021 |
Li Y, Steenwyk JL, Chang Y, Wang Y, James TY, Stajich JE, Spatafora JW, Groenewald M, Dunn CW, Hittinger CT, Shen XX, Rokas A. A genome-scale phylogeny of the kingdom Fungi. Current Biology : Cb. PMID 33607033 DOI: 10.1016/j.cub.2021.01.074 |
0.812 |
|
| 2020 |
Shen XX, Li Y, Hittinger CT, Chen XX, Rokas A. An investigation of irreproducibility in maximum likelihood phylogenetic inference. Nature Communications. 11: 6096. PMID 33257660 DOI: 10.1038/s41467-020-20005-6 |
0.766 |
|
| 2020 |
Shen XX, Steenwyk JL, LaBella AL, Opulente DA, Zhou X, Kominek J, Li Y, Groenewald M, Hittinger CT, Rokas A. Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota. Science Advances. 6. PMID 33148650 DOI: 10.1126/sciadv.abd0079 |
0.834 |
|
| 2020 |
Stoneman HR, Wrobel RL, Place M, Graham M, Krause DJ, De Chiara M, Liti G, Schacherer J, Landick R, Gasch AP, Sato TK, Hittinger CT. CRISpy-Pop: A Web Tool for Designing CRISPR/Cas9-Driven Genetic Modifications in Diverse Populations. G3 (Bethesda, Md.). PMID 32963084 DOI: 10.1534/g3.120.401498 |
0.675 |
|
| 2020 |
Libkind D, Čadež N, Opulente DA, Langdon QK, Rosa CA, Sampaio JP, Gonçalves P, Hittinger CT, Lachance MA. Towards yeast taxogenomics: lessons from novel species descriptions based on complete genome sequences. Fems Yeast Research. 20. PMID 32710773 DOI: 10.1093/Femsyr/Foaa042 |
0.84 |
|
| 2020 |
James TY, Stajich JE, Hittinger CT, Rokas A. Toward a Fully Resolved Fungal Tree of Life. Annual Review of Microbiology. PMID 32660385 DOI: 10.1146/Annurev-Micro-022020-051835 |
0.79 |
|
| 2020 |
Peris D, Alexander WG, Fisher KJ, Moriarty RV, Basuino MG, Ubbelohde EJ, Wrobel RL, Hittinger CT. Synthetic hybrids of six yeast species. Nature Communications. 11: 2085. PMID 32350251 DOI: 10.1038/S41467-020-15559-4 |
0.829 |
|
| 2020 |
Dharampal PS, Diaz-Garcia L, Haase MAB, Zalapa J, Currie CR, Hittinger CT, Steffan SA. Microbial Diversity Associated with the Pollen Stores of Captive-Bred Bumble Bee Colonies. Insects. 11. PMID 32316296 DOI: 10.3390/Insects11040250 |
0.658 |
|
| 2020 |
Langdon QK, Peris D, Eizaguirre JI, Opulente DA, Buh KV, Sylvester K, Jarzyna M, Rodríguez ME, Lopes CA, Libkind D, Hittinger CT. Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids. Plos Genetics. 16: e1008680. PMID 32251477 DOI: 10.1371/Journal.Pgen.1008680 |
0.835 |
|
| 2020 |
Hittinger CT. Evaluation of Kuroda et al.: Insight into Yeast Isobutanol Tolerance with Advances Still Needed. Cell Systems. 10: 124. PMID 32105630 DOI: 10.1016/J.Cels.2020.01.005 |
0.592 |
|
| 2020 |
Libkind D, Peris D, Cubillos FA, Steenwyk JL, Opulente DA, Langdon QK, Rokas A, Hittinger CT. Into the wild: new yeast genomes from natural environments and new tools for their analysis. Fems Yeast Research. 20. PMID 32009143 DOI: 10.1093/Femsyr/Foaa008 |
0.828 |
|
| 2019 |
Langdon QK, Peris D, Baker EP, Opulente DA, Nguyen HV, Bond U, Gonçalves P, Sampaio JP, Libkind D, Hittinger CT. Fermentation innovation through complex hybridization of wild and domesticated yeasts. Nature Ecology & Evolution. PMID 31636426 DOI: 10.1038/S41559-019-0998-8 |
0.818 |
|
| 2019 |
Labella AL, Opulente DA, Steenwyk JL, Hittinger CT, Rokas A. Variation and selection on codon usage bias across an entire subphylum. Plos Genetics. 15: e1008304. PMID 31365533 DOI: 10.1371/Journal.Pgen.1008304 |
0.837 |
|
| 2019 |
Krassowski T, Kominek J, Shen XX, Opulente DA, Zhou X, Rokas A, Hittinger CT, Wolfe KH. Multiple Reinventions of Mating-type Switching during Budding Yeast Evolution. Current Biology : Cb. PMID 31353182 DOI: 10.1016/J.Cub.2019.06.056 |
0.802 |
|
| 2019 |
Steenwyk JL, Opulente DA, Kominek J, Shen XX, Zhou X, Labella AL, Bradley NP, Eichman BF, Čadež N, Libkind D, DeVirgilio J, Hulfachor AB, Kurtzman CP, Hittinger CT, Rokas A. Extensive loss of cell-cycle and DNA repair genes in an ancient lineage of bipolar budding yeasts. Plos Biology. 17: e3000255. PMID 31112549 DOI: 10.1371/Journal.Pbio.3000255 |
0.813 |
|
| 2019 |
Opulente DA, Langdon QK, Buh KV, Haase MAB, Sylvester K, Moriarty RV, Jarzyna M, Considine SL, Schneider RM, Hittinger CT. Pathogenic budding yeasts isolated outside of clinical settings. Fems Yeast Research. 19. PMID 31076749 DOI: 10.1093/Femsyr/Foz032 |
0.799 |
|
| 2019 |
Baker EP, Hittinger CT. Evolution of a novel chimeric maltotriose transporter in Saccharomyces eubayanus from parent proteins unable to perform this function. Plos Genetics. 15: e1007786. PMID 30946740 DOI: 10.1371/Journal.Pgen.1007786 |
0.818 |
|
| 2019 |
Kominek J, Doering DT, Opulente DA, Shen XX, Zhou X, DeVirgilio J, Hulfachor AB, Groenewald M, Mcgee MA, Karlen SD, Kurtzman CP, Rokas A, Hittinger CT. Eukaryotic Acquisition of a Bacterial Operon. Cell. PMID 30799038 DOI: 10.1016/J.Cell.2019.01.034 |
0.803 |
|
| 2019 |
Baker EP, Peris D, Moriarty RV, Li XC, Fay JC, Hittinger CT. Mitochondrial DNA and temperature tolerance in lager yeasts. Science Advances. 5: eaav1869. PMID 30729163 DOI: 10.1126/Sciadv.Aav1869 |
0.792 |
|
| 2019 |
Li XC, Peris D, Hittinger CT, Sia EA, Fay JC. Mitochondria-encoded genes contribute to evolution of heat and cold tolerance in yeast. Science Advances. 5: eaav1848. PMID 30729162 DOI: 10.1126/Sciadv.Aav1848 |
0.828 |
|
| 2019 |
Čadež N, Bellora N, Ulloa R, Hittinger CT, Libkind D. Genomic content of a novel yeast species Hanseniaspora gamundiae sp. nov. from fungal stromata (Cyttaria) associated with a unique fermented beverage in Andean Patagonia, Argentina. Plos One. 14: e0210792. PMID 30699175 DOI: 10.1371/Journal.Pone.0210792 |
0.747 |
|
| 2018 |
Shen XX, Opulente DA, Kominek J, Zhou X, Steenwyk JL, Buh KV, Haase MAB, Wisecaver JH, Wang M, Doering DT, Boudouris JT, Schneider RM, Langdon QK, Ohkuma M, Endoh R, ... Hittinger CT, et al. Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum. Cell. PMID 30415838 DOI: 10.1016/J.Cell.2018.10.023 |
0.828 |
|
| 2018 |
Krause DJ, Kominek J, Opulente DA, Shen XX, Zhou X, Langdon QK, DeVirgilio J, Hulfachor AB, Kurtzman CP, Rokas A, Hittinger CT. Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 30297402 DOI: 10.1073/Pnas.1806268115 |
0.801 |
|
| 2018 |
Langdon QK, Peris D, Kyle B, Hittinger CT. sppIDer: a species identification tool to investigate hybrid genomes with high-throughput sequencing. Molecular Biology and Evolution. PMID 30184140 DOI: 10.1093/Molbev/Msy166 |
0.834 |
|
| 2018 |
Eizaguirre JI, Peris D, Rodríguez ME, Lopes CA, De Los Ríos P, Hittinger CT, Libkind D. Phylogeography of the wild Lager-brewing ancestor (Saccharomyces eubayanus) in Patagonia. Environmental Microbiology. PMID 30105823 DOI: 10.1111/1462-2920.14375 |
0.828 |
|
| 2018 |
Higgins DA, Young MK, Tremaine M, Sardi M, Fletcher JM, Agnew M, Liu L, Dickinson Q, Peris D, Wrobel RL, Hittinger CT, Gasch AP, Singer SW, Simmons BA, Landick R, et al. Natural Variation in the Multidrug Efflux Pump Underlies Ionic Liquid Tolerance in Yeast. Genetics. PMID 30045857 DOI: 10.1534/Genetics.118.301161 |
0.83 |
|
| 2018 |
Kuang MC, Kominek J, Alexander WG, Cheng JF, Wrobel RL, Hittinger CT. Repeated cis-regulatory tuning of a metabolic bottleneck gene during evolution. Molecular Biology and Evolution. PMID 29788479 DOI: 10.1093/Molbev/Msy102 |
0.821 |
|
| 2018 |
Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH. Evolutionary instability of CUG-Leu in the genetic code of budding yeasts. Nature Communications. 9: 1887. PMID 29760453 DOI: 10.1038/S41467-018-04374-7 |
0.809 |
|
| 2018 |
Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen XX, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage. Elife. 7. PMID 29648535 DOI: 10.7554/Elife.33034 |
0.818 |
|
| 2018 |
Lachance MA, Hittinger CT. Introducing 'ecoYeast': ecology and communities of yeasts. Yeast (Chichester, England). 35: 313. PMID 29633371 DOI: 10.1002/Yea.3307 |
0.596 |
|
| 2018 |
Opulente DA, Rollinson EJ, Bernick-Roehr C, Hulfachor AB, Rokas A, Kurtzman CP, Hittinger CT. Factors driving metabolic diversity in the budding yeast subphylum. Bmc Biology. 16: 26. PMID 29499717 DOI: 10.1186/S12915-018-0498-3 |
0.817 |
|
| 2018 |
Gonçalves C, Wisecaver JH, Kominek J, Oom MS, Leandro MJ, Shen X, Opulente DA, Zhou X, Peris D, Kurtzman CP, Hittinger CT, Rokas A, Gonçalves P. Author response: Evidence for loss and reacquisition of alcoholic fermentation in a fructophilic yeast lineage Elife. DOI: 10.7554/Elife.33034.033 |
0.758 |
|
| 2017 |
Vakirlis NN, Hebert AS, Opulente DA, Achaz G, Hittinger CT, Fischer G, Coon JJ, Lafontaine I. A molecular portrait of de novo genes in yeasts. Molecular Biology and Evolution. PMID 29220506 DOI: 10.1093/Molbev/Msx315 |
0.823 |
|
| 2017 |
Zhou X, Shen X, Hittinger CT, Rokas A. Evaluating fast maximum likelihood-based phylogenetic programs using empirical phylogenomic data sets. Molecular Biology and Evolution. PMID 29177474 DOI: 10.1093/Molbev/Msx302 |
0.771 |
|
| 2017 |
Hittinger CT, Steele JL, Ryder DS. Diverse yeasts for diverse fermented beverages and foods. Current Opinion in Biotechnology. 49: 199-206. PMID 29102814 DOI: 10.1016/J.Copbio.2017.10.004 |
0.689 |
|
| 2017 |
Steffan SA, Dharampal PS, Diaz-Garcia L, Currie CR, Zalapa J, Hittinger CT. Empirical, Metagenomic, and Computational Techniques Illuminate the Mechanisms by which Fungicides Compromise Bee Health. Journal of Visualized Experiments : Jove. PMID 29053686 DOI: 10.3791/54631 |
0.644 |
|
| 2017 |
Peris D, Pérez-Torrado R, Hittinger CT, Barrio E, Querol A. On the origins and industrial applications of Saccharomyces cerevisiae x Saccharomyces kudriavzevii hybrids. Yeast (Chichester, England). PMID 29027262 DOI: 10.1002/Yea.3283 |
0.791 |
|
| 2017 |
Morais CG, Batista TM, Kominek J, Borelli BM, Furtado C, Moreira RG, Franco GR, Rosa LH, Fonseca C, Hittinger CT, Lachance MA, Rosa CA. Spathaspora boniae sp. nov., a D-xylose-fermenting species in the Candida albicans/Lodderomyces clade. International Journal of Systematic and Evolutionary Microbiology. PMID 28884677 DOI: 10.1099/Ijsem.0.002186 |
0.825 |
|
| 2017 |
Shen XX, Hittinger CT, Rokas A. Contentious relationships in phylogenomic studies can be driven by a handful of genes. Nature Ecology & Evolution. 1: 126. PMID 28812701 DOI: 10.1038/S41559-017-0126 |
0.773 |
|
| 2017 |
Gibson B, Geertman JA, Hittinger CT, Krogerus K, Libkind D, Louis EJ, Magalhães F, Sampaio JP. New yeasts - new brews: modern approaches to brewing yeast design and development. Fems Yeast Research. PMID 28582493 DOI: 10.1093/Femsyr/Fox038 |
0.716 |
|
| 2017 |
Haase MAB, Kominek J, Langdon QK, Kurtzman CP, Hittinger CT. Genome sequence and physiological analysis of Yamadazyma laniorum f.a. sp. nov. and a reevaluation of the apocryphal xylose fermentation of its sister species Candida tenuis. Fems Yeast Research. PMID 28419220 DOI: 10.1093/Femsyr/Fox019 |
0.836 |
|
| 2017 |
Peris D, Moriarty RV, Alexander WG, Baker E, Sylvester K, Sardi M, Langdon QK, Libkind D, Wang QM, Bai FY, Leducq JB, Charron G, Landry CR, Sampaio JP, Gonçalves P, ... Hittinger CT, et al. Hybridization and adaptive evolution of diverse Saccharomyces species for cellulosic biofuel production. Biotechnology For Biofuels. 10: 78. PMID 28360936 DOI: 10.1186/S13068-017-0763-7 |
0.794 |
|
| 2016 |
Bellora N, Moliné M, David-Palma M, Coelho MA, Hittinger CT, Sampaio JP, Gonçalves P, Libkind D. Comparative genomics provides new insights into the diversity, physiology, and sexuality of the only industrially exploited tremellomycete: Phaffia rhodozyma. Bmc Genomics. 17: 901. PMID 27829365 DOI: 10.1186/S12864-016-3244-7 |
0.736 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Narasimhan RA, McGee MA, Dickinson Q, La Reau A, Xie D, ... Hittinger CT, et al. Correction: Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006447. PMID 27828955 DOI: 10.1371/journal.pgen.1006447 |
0.603 |
|
| 2016 |
Sato TK, Tremaine M, Parreiras LS, Hebert AS, Myers KS, Higbee AJ, Sardi M, McIlwain SJ, Ong IM, Breuer RJ, Avanasi Narasimhan R, McGee MA, Dickinson Q, La Reau A, Xie D, ... Hittinger CT, et al. Directed Evolution Reveals Unexpected Epistatic Interactions That Alter Metabolic Regulation and Enable Anaerobic Xylose Use by Saccharomyces cerevisiae. Plos Genetics. 12: e1006372. PMID 27741250 DOI: 10.1371/Journal.Pgen.1006372 |
0.682 |
|
| 2016 |
Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network. Elife. 5. PMID 27690225 DOI: 10.7554/Elife.19027 |
0.761 |
|
| 2016 |
Shen XX, Zhou X, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. Reconstructing the Backbone of the Saccharomycotina Yeast Phylogeny Using Genome-Scale Data. G3 (Bethesda, Md.). PMID 27672114 DOI: 10.1534/G3.116.034744 |
0.85 |
|
| 2016 |
Zhou X, Peris D, Kominek J, Kurtzman CP, Hittinger CT, Rokas A. in silico Whole Genome Sequencer & Analyzer (iWGS): A Computational Pipeline to Guide the Design and Analysis of de novo Genome Sequencing Studies. G3 (Bethesda, Md.). PMID 27638685 DOI: 10.1534/G3.116.034249 |
0.811 |
|
| 2016 |
Leducq JB, Nielly-Thibault L, Charron G, Eberlein C, Verta JP, Samani P, Sylvester K, Hittinger CT, Bell G, Landry CR. Speciation driven by hybridization and chromosomal plasticity in a wild yeast. Nature Microbiology. 1: 15003. PMID 27571751 DOI: 10.1038/Nmicrobiol.2015.3 |
0.689 |
|
| 2016 |
Riley R, Haridas S, Wolfe KH, Lopes MR, Hittinger CT, Göker M, Salamov AA, Wisecaver JH, Long TM, Calvey CH, Aerts AL, Barry KW, Choi C, Clum A, Coughlan AY, et al. Comparative genomics of biotechnologically important yeasts. Proceedings of the National Academy of Sciences of the United States of America. PMID 27535936 DOI: 10.1073/Pnas.1603941113 |
0.834 |
|
| 2016 |
Peris D, Langdon QK, Moriarty RV, Sylvester K, Bontrager M, Charron G, Leducq JB, Landry CR, Libkind D, Hittinger CT. Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus. Plos Genetics. 12: e1006155. PMID 27385107 DOI: 10.1371/Journal.Pgen.1006155 |
0.827 |
|
| 2016 |
Lopes MR, Morais CG, Kominek J, Cadete RM, Soares MA, Uetanabaro AP, Fonseca C, Lachance MA, Hittinger CT, Rosa CA. Genomic analysis and D-xylose fermentation of three novel Spathaspora species: Spathaspora girioi sp. nov., Spathaspora hagerdaliae f. a., sp. nov., and Spathaspora gorwiae f. a., sp. nov. Fems Yeast Research. PMID 27188884 DOI: 10.1093/Femsyr/Fow044 |
0.817 |
|
| 2016 |
McIlwain SJ, Peris D, Sardi M, Moskvin OV, Zhan F, Myers KS, Riley NM, Buzzell A, Parreiras LS, Ong IM, Landick R, Coon JJ, Gasch AP, Sato TK, Hittinger CT. Genome Sequence and Analysis of a Stress-Tolerant, Wild-Derived Strain of Saccharomyces cerevisiae Used in Biofuels Research. G3 (Bethesda, Md.). 6: 1757-66. PMID 27172212 DOI: 10.1534/G3.116.029389 |
0.843 |
|
| 2016 |
Alexander WG, Wisecaver JH, Rokas A, Hittinger CT. Horizontally acquired genes in early-diverging pathogenic fungi enable the use of host nucleosides and nucleotides. Proceedings of the National Academy of Sciences of the United States of America. PMID 27035945 DOI: 10.1073/Pnas.1517242113 |
0.803 |
|
| 2016 |
Kuang MC, Hutchins PD, Russell JD, Coon JJ, Hittinger CT. Author response: Ongoing resolution of duplicate gene functions shapes the diversification of a metabolic network Elife. DOI: 10.7554/Elife.19027.028 |
0.64 |
|
| 2015 |
Hittinger CT, Rokas A, Bai FY, Boekhout T, Gonçalves P, Jeffries TW, Kominek J, Lachance MA, Libkind D, Rosa CA, Sampaio JP, Kurtzman CP. Genomics and the making of yeast biodiversity. Current Opinion in Genetics & Development. 35: 100-109. PMID 26649756 DOI: 10.1016/J.Gde.2015.10.008 |
0.854 |
|
| 2015 |
Alexander WG, Peris D, Pfannenstiel BT, Opulente DA, Kuang M, Hittinger CT. Efficient engineering of marker-free synthetic allotetraploids of Saccharomyces. Fungal Genetics and Biology : Fg & B. PMID 26555931 DOI: 10.1016/J.Fgb.2015.11.002 |
0.815 |
|
| 2015 |
Baker E, Wang B, Bellora N, Peris D, Hulfachor AB, Koshalek JA, Adams M, Libkind D, Hittinger CT. The genome sequence of Saccharomyces eubayanus and the domestication of lager-brewing yeasts. Molecular Biology and Evolution. PMID 26269586 DOI: 10.1093/Molbev/Msv168 |
0.837 |
|
| 2015 |
Coelho MA, Almeida JM, Hittinger CT, Gonçalves P. Draft Genome Sequence of Sporidiobolus salmonicolor CBS 6832, a Red-Pigmented Basidiomycetous Yeast. Genome Announcements. 3. PMID 25999568 DOI: 10.1128/Genomea.00444-15 |
0.717 |
|
| 2015 |
Sylvester K, Wang QM, James B, Mendez R, Hulfachor AB, Hittinger CT. Temperature and host preferences drive the diversification of Saccharomyces and other yeasts: a survey and the discovery of eight new yeast species. Fems Yeast Research. 15. PMID 25743785 DOI: 10.1093/Femsyr/Fov002 |
0.615 |
|
| 2014 |
Alexander WG, Doering DT, Hittinger CT. High-efficiency genome editing and allele replacement in prototrophic and wild strains of Saccharomyces. Genetics. 198: 859-66. PMID 25209147 DOI: 10.1534/Genetics.114.170118 |
0.83 |
|
| 2014 |
Almeida P, Gonçalves C, Teixeira S, Libkind D, Bontrager M, Masneuf-Pomarède I, Albertin W, Durrens P, Sherman DJ, Marullo P, Hittinger CT, Gonçalves P, Sampaio JP. A Gondwanan imprint on global diversity and domestication of wine and cider yeast Saccharomyces uvarum. Nature Communications. 5: 4044. PMID 24887054 DOI: 10.1038/Ncomms5044 |
0.736 |
|
| 2014 |
Peris D, Sylvester K, Libkind D, Gonçalves P, Sampaio JP, Alexander WG, Hittinger CT. Population structure and reticulate evolution of Saccharomyces eubayanus and its lager-brewing hybrids. Molecular Ecology. 23: 2031-45. PMID 24612382 DOI: 10.1111/Mec.12702 |
0.826 |
|
| 2014 |
Leducq JB, Charron G, Samani P, Dubé AK, Sylvester K, James B, Almeida P, Sampaio JP, Hittinger CT, Bell G, Landry CR. Local climatic adaptation in a widespread microorganism. Proceedings. Biological Sciences / the Royal Society. 281: 20132472. PMID 24403328 DOI: 10.1098/Rspb.2013.2472 |
0.634 |
|
| 2013 |
Hittinger CT. Saccharomyces diversity and evolution: a budding model genus. Trends in Genetics : Tig. 29: 309-17. PMID 23395329 DOI: 10.1016/J.Tig.2013.01.002 |
0.749 |
|
| 2012 |
Hittinger CT. Evolution. Endless rots most beautiful. Science (New York, N.Y.). 336: 1649-50. PMID 22745411 DOI: 10.1126/Science.1224682 |
0.656 |
|
| 2011 |
Scannell DR, Zill OA, Rokas A, Payen C, Dunham MJ, Eisen MB, Rine J, Johnston M, Hittinger CT. The Awesome Power of Yeast Evolutionary Genetics: New Genome Sequences and Strain Resources for the Saccharomyces sensu stricto Genus. G3 (Bethesda, Md.). 1: 11-25. PMID 22384314 DOI: 10.1534/G3.111.000273 |
0.858 |
|
| 2011 |
Libkind D, Hittinger CT, Valério E, Gonçalves C, Dover J, Johnston M, Gonçalves P, Sampaio JP. Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast. Proceedings of the National Academy of Sciences of the United States of America. 108: 14539-44. PMID 21873232 DOI: 10.1073/Pnas.1105430108 |
0.803 |
|
| 2010 |
Hittinger CT, Hesselberth JR. Nucleosome patterning evolution: steady aim despite moving targets. Molecular Systems Biology. 6: 376. PMID 20461077 DOI: 10.1038/Msb.2010.34 |
0.679 |
|
| 2010 |
Hittinger CT, Gonçalves P, Sampaio JP, Dover J, Johnston M, Rokas A. Remarkably ancient balanced polymorphisms in a multi-locus gene network. Nature. 464: 54-8. PMID 20164837 DOI: 10.1038/Nature08791 |
0.836 |
|
| 2010 |
Hittinger CT, Johnston M, Tossberg JT, Rokas A. Leveraging skewed transcript abundance by RNA-Seq to increase the genomic depth of the tree of life. Proceedings of the National Academy of Sciences of the United States of America. 107: 1476-81. PMID 20080632 DOI: 10.1073/Pnas.0910449107 |
0.834 |
|
| 2009 |
Gibbons JG, Janson EM, Hittinger CT, Johnston M, Abbot P, Rokas A. Benchmarking next-generation transcriptome sequencing for functional and evolutionary genomics. Molecular Biology and Evolution. 26: 2731-44. PMID 19706727 DOI: 10.1093/Molbev/Msp188 |
0.829 |
|
| 2008 |
Hittinger CT, Carroll SB. Evolution of an insect-specific GROUCHO-interaction motif in the ENGRAILED selector protein. Evolution & Development. 10: 537-45. PMID 18803772 DOI: 10.1111/J.1525-142X.2008.00269.X |
0.69 |
|
| 2007 |
Hittinger CT, Carroll SB. Gene duplication and the adaptive evolution of a classic genetic switch. Nature. 449: 677-81. PMID 17928853 DOI: 10.1038/Nature06151 |
0.762 |
|
| 2007 |
Rokas A, Hittinger CT. Transcriptional rewiring: the proof is in the eating. Current Biology : Cb. 17: R626-8. PMID 17714646 DOI: 10.1016/J.Cub.2007.06.025 |
0.772 |
|
| 2005 |
Tour E, Hittinger CT, McGinnis W. Evolutionarily conserved domains required for activation and repression functions of the Drosophila Hox protein Ultrabithorax. Development (Cambridge, England). 132: 5271-81. PMID 16284118 DOI: 10.1242/Dev.02138 |
0.603 |
|
| 2005 |
Hittinger CT, Stern DL, Carroll SB. Pleiotropic functions of a conserved insect-specific Hox peptide motif. Development (Cambridge, England). 132: 5261-70. PMID 16267091 DOI: 10.1242/Dev.02146 |
0.699 |
|
| 2004 |
Hittinger CT, Rokas A, Carroll SB. Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts. Proceedings of the National Academy of Sciences of the United States of America. 101: 14144-9. PMID 15381776 DOI: 10.1073/Pnas.0404319101 |
0.849 |
|
| 2004 |
Palangat M, Hittinger CT, Landick R. Downstream DNA selectively affects a paused conformation of human RNA polymerase II. Journal of Molecular Biology. 341: 429-42. PMID 15276834 DOI: 10.1016/J.Jmb.2004.06.009 |
0.608 |
|
| 2003 |
King N, Hittinger CT, Carroll SB. Evolution of key cell signaling and adhesion protein families predates animal origins. Science (New York, N.Y.). 301: 361-3. PMID 12869759 DOI: 10.1126/Science.1083853 |
0.728 |
|
| 2003 |
Guettler S, Jackson EN, Lucchese SA, Honaas L, Green A, Hittinger CT, Tian Y, Lilly WW, Gathman AC. ESTs from the basidiomycete Schizophyllum commune grown on nitrogen-replete and nitrogen-limited media. Fungal Genetics and Biology : Fg & B. 39: 191-8. PMID 12781677 DOI: 10.1016/S1087-1845(03)00017-3 |
0.702 |
|
| 2002 |
Vigouroux Y, McMullen M, Hittinger CT, Houchins K, Schulz L, Kresovich S, Matsuoka Y, Doebley J. Identifying genes of agronomic importance in maize by screening microsatellites for evidence of selection during domestication. Proceedings of the National Academy of Sciences of the United States of America. 99: 9650-5. PMID 12105270 DOI: 10.1073/Pnas.112324299 |
0.682 |
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