Thomas Clandinin - Publications

Stanford University, Palo Alto, CA 

89 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2021 Mann K, Deny S, Ganguli S, Clandinin TR. Coupling of activity, metabolism and behaviour across the Drosophila brain. Nature. 593: 244-248. PMID 33911283 DOI: 10.1038/s41586-021-03497-0  1
2021 Turner MH, Mann K, Clandinin TR. The connectome predicts resting-state functional connectivity across the Drosophila brain. Current Biology : Cb. PMID 33770490 DOI: 10.1016/j.cub.2021.03.004  1
2020 Isaacman-Beck J, Paik KC, Wienecke CFR, Yang HH, Fisher YE, Wang IE, Ishida IG, Maimon G, Wilson RI, Clandinin TR. SPARC enables genetic manipulation of precise proportions of cells. Nature Neuroscience. PMID 32690967 DOI: 10.1038/S41593-020-0668-9  1
2019 Schwabe T, Borycz JA, Meinertzhagen IA, Clandinin TR. Differential Adhesion Determines the Organization of Synaptic Fascicles in the Drosophila Visual System. Current Biology : Cb. 29: 715. PMID 30779893 DOI: 10.1016/j.cub.2019.01.071  1
2019 Tsai JW, Kostyleva R, Chen PL, Rivas-Serna IM, Clandinin MT, Meinertzhagen IA, Clandinin TR. Transcriptional Feedback Links Lipid Synthesis to Synaptic Vesicle Pools in Drosophila Photoreceptors. Neuron. PMID 30737130 DOI: 10.1016/J.Neuron.2019.01.015  1
2018 Barnhart EL, Wang IE, Wei H, Desplan C, Clandinin TR. Sequential Nonlinear Filtering of Local Motion Cues by Global Motion Circuits. Neuron. PMID 30220510 DOI: 10.1016/j.neuron.2018.08.022  1
2018 Wienecke CFR, Leong JCS, Clandinin TR. Linear Summation Underlies Direction Selectivity in Drosophila. Neuron. PMID 30057202 DOI: 10.1016/j.neuron.2018.07.005  1
2018 Yang HH, Clandinin TR. Elementary Motion Detection in Drosophila: Algorithms and Mechanisms. Annual Review of Vision Science. PMID 29949723 DOI: 10.1146/annurev-vision-091517-034153  1
2017 Isaacman-Beck J, Clandinin TR. Glia put visual map in sync. Science (New York, N.Y.). 357: 867-868. PMID 28860369 DOI: 10.1126/science.aao2991  1
2017 Mann K, Gallen CL, Clandinin TR. Whole-Brain Calcium Imaging Reveals an Intrinsic Functional Network in Drosophila. Current Biology : Cb. PMID 28756955 DOI: 10.1016/j.cub.2017.06.076  1
2017 Chamberland S, Yang HH, Pan MM, Evans SW, Guan S, Chavarha M, Yang Y, Salesse C, Wu H, Wu JC, Clandinin TR, Toth K, Lin MZ, St-Pierre F. Fast two-photon imaging of subcellular voltage dynamics in neuronal tissue with genetically encoded indicators. Elife. 6. PMID 28749338 DOI: 10.7554/Elife.25690  1
2017 Katsov AY, Freifeld L, Horowitz M, Kuehn S, Clandinin TR. Dynamic structure of locomotor behavior in walking fruit flies. Elife. 6. PMID 28742018 DOI: 10.7554/Elife.26410  1
2017 Mann K, Clandinin TR. How Does Familiarity Breed Contempt? Cell. 169: 775-776. PMID 28525749 DOI: 10.1016/j.cell.2017.05.007  1
2017 Fisher YE, Yang HH, Isaacman-Beck J, Xie M, Gohl DM, Clandinin TR. FlpStop, a tool for conditional gene control in Drosophila. Elife. 6. PMID 28211790 DOI: 10.7554/Elife.22279  1
2016 Clandinin TR, Marder E. Editorial overview: Microcircuit evolution and computation 2016. Current Opinion in Neurobiology. 41: 188-190. PMID 27810767 DOI: 10.1016/j.conb.2016.10.001  0.01
2016 Wang IE, Clandinin TR. The Influence of Wiring Economy on Nervous System Evolution. Current Biology : Cb. 26: R1101-R1108. PMID 27780051 DOI: 10.1016/j.cub.2016.08.053  1
2016 Wang IE, Lapan SW, Scimone ML, Clandinin TR, Reddien PW. Hedgehog signaling regulates gene expression in planarian glia. Elife. 5. PMID 27612382 DOI: 10.7554/Elife.16996  1
2016 Leong JC, Esch JJ, Poole B, Ganguli S, Clandinin TR. Direction Selectivity in Drosophila Emerges from Preferred-Direction Enhancement and Null-Direction Suppression. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 36: 8078-92. PMID 27488629 DOI: 10.1523/Jneurosci.1272-16.2016  1
2016 Yang HH, St-Pierre F, Sun X, Ding X, Lin MZ, Clandinin TR. Subcellular Imaging of Voltage and Calcium Signals Reveals Neural Processing In Vivo. Cell. PMID 27264607 DOI: 10.1016/J.Cell.2016.05.031  1
2016 Barnhart EL, Clandinin TR. Can You Hear Me Now? Neuron. 89: 425-7. PMID 26844825 DOI: 10.1016/j.neuron.2016.01.030  1
2016 Clandinin TR, Goodman MB. Grabbing brain activity on the go. Proceedings of the National Academy of Sciences of the United States of America. PMID 26842834 DOI: 10.1073/pnas.1524219113  1
2015 Fisher YE, Leong JC, Sporar K, Ketkar MD, Gohl DM, Clandinin TR, Silies M. A Class of Visual Neurons with Wide-Field Properties Is Required for Local Motion Detection. Current Biology : Cb. PMID 26670999 DOI: 10.1016/J.Cub.2015.11.018  1
2015 Fisher YE, Silies M, Clandinin TR. Orientation Selectivity Sharpens Motion Detection in Drosophila. Neuron. 88: 390-402. PMID 26456048 DOI: 10.1016/J.Neuron.2015.09.033  1
2015 Mann K, Clandinin TR. Neurons Rho to Get in Shape for the Day. Cell. 162: 699-700. PMID 26276623 DOI: 10.1016/j.cell.2015.07.044  1
2015 Clandinin TR, Giocomo LM. Neuroscience: Internal compass puts flies in their place. Nature. 521: 165-6. PMID 25971505 DOI: 10.1038/521165A  1
2015 Gao XJ, Riabinina O, Li J, Potter CJ, Clandinin TR, Luo L. A transcriptional reporter of intracellular Ca(2+) in Drosophila. Nature Neuroscience. 18: 917-25. PMID 25961791 DOI: 10.1038/Nn.4016  1
2015 Gao XJ, Clandinin TR, Luo L. Extremely sparse olfactory inputs are sufficient to mediate innate aversion in Drosophila. Plos One. 10: e0125986. PMID 25927233 DOI: 10.1371/journal.pone.0125986  1
2015 Esch JJ, Fisher YE, Leong JCS, Clandinin TR. Genetic pathways to circuit understanding in drosophila Neuromethods. 92: 249-274. DOI: 10.1007/978-1-4939-1963-5_12  1
2014 Wernet MF, Klovstad M, Clandinin TR. A Drosophila toolkit for the visualization and quantification of viral replication launched from transgenic genomes. Plos One. 9: e112092. PMID 25386852 DOI: 10.1371/journal.pone.0112092  1
2014 Yang HH, Clandinin TR. What can fruit flies teach us about karate? Elife. 3: e04040. PMID 25139958 DOI: 10.7554/eLife.04040  1
2014 Jagadish S, Barnea G, Clandinin TR, Axel R. Identifying functional connections of the inner photoreceptors in Drosophila using Tango-Trace. Neuron. 83: 630-44. PMID 25043419 DOI: 10.1016/J.Neuron.2014.06.025  1
2014 Behnia R, Clark DA, Carter AG, Clandinin TR, Desplan C. Processing properties of ON and OFF pathways for Drosophila motion detection. Nature. 512: 427-30. PMID 25043016 DOI: 10.1038/Nature13427  1
2014 Silies M, Gohl DM, Clandinin TR. Motion-detecting circuits in flies: coming into view. Annual Review of Neuroscience. 37: 307-27. PMID 25032498 DOI: 10.1146/Annurev-Neuro-071013-013931  1
2014 Velez MM, Gohl D, Clandinin TR, Wernet MF. Differences in neural circuitry guiding behavioral responses to polarized light presented to either the dorsal or ventral retina in Drosophila. Journal of Neurogenetics. 28: 348-60. PMID 24912584 DOI: 10.3109/01677063.2014.922556  1
2014 Schwabe T, Borycz JA, Meinertzhagen IA, Clandinin TR. Differential adhesion determines the organization of synaptic fascicles in the Drosophila visual system. Current Biology : Cb. 24: 1304-13. PMID 24881879 DOI: 10.1016/J.Cub.2014.04.047  1
2014 Silies M, Clandinin TR. Vision: EM-erging motion-detecting circuits. Current Biology : Cb. 24: R390-2. PMID 24845666 DOI: 10.1016/J.Cub.2014.03.067  1
2014 Velez MM, Wernet MF, Clark DA, Clandinin TR. Walking Drosophila align with the e-vector of linearly polarized light through directed modulation of angular acceleration. Journal of Comparative Physiology. a, Neuroethology, Sensory, Neural, and Behavioral Physiology. 200: 603-14. PMID 24810784 DOI: 10.1007/s00359-014-0910-6  1
2014 Wernet MF, Klovstad M, Clandinin TR. Generation of infectious virus particles from inducible transgenic genomes. Current Biology : Cb. 24: R107-8. PMID 24502780 DOI: 10.1016/j.cub.2013.12.009  1
2014 Clark DA, Fitzgerald JE, Ales JM, Gohl DM, Silies MA, Norcia AM, Clandinin TR. Flies and humans share a motion estimation strategy that exploits natural scene statistics. Nature Neuroscience. 17: 296-303. PMID 24390225 DOI: 10.1038/Nn.3600  1
2014 Gohl DM, Freifeld L, Silies M, Hwa JJ, Horowitz M, Clandinin TR. Large-scale mapping of transposable element insertion sites using digital encoding of sample identity. Genetics. 196: 615-23. PMID 24374352 DOI: 10.1534/Genetics.113.159483  1
2013 Schwabe T, Neuert H, Clandinin TR. A network of cadherin-mediated interactions polarizes growth cones to determine targeting specificity. Cell. 154: 351-64. PMID 23870124 DOI: 10.1016/J.Cell.2013.06.011  1
2013 Silies M, Gohl DM, Fisher YE, Freifeld L, Clark DA, Clandinin TR. Modular use of peripheral input channels tunes motion-detecting circuitry. Neuron. 79: 111-27. PMID 23849199 DOI: 10.1016/J.Neuron.2013.04.029  1
2013 Freifeld L, Clark DA, Schnitzer MJ, Horowitz MA, Clandinin TR. GABAergic lateral interactions tune the early stages of visual processing in Drosophila. Neuron. 78: 1075-89. PMID 23791198 DOI: 10.1016/j.neuron.2013.04.024  1
2013 Gao XJ, Potter CJ, Gohl DM, Silies M, Katsov AY, Clandinin TR, Luo L. Specific kinematics and motor-related neurons for aversive chemotaxis in Drosophila. Current Biology : Cb. 23: 1163-72. PMID 23770185 DOI: 10.1016/J.Cub.2013.05.008  1
2013 Clark DA, Freifeld L, Clandinin TR. Mapping and cracking sensorimotor circuits in genetic model organisms. Neuron. 78: 583-95. PMID 23719159 DOI: 10.1016/j.neuron.2013.05.006  1
2013 de Vries SE, Clandinin T. Optogenetic stimulation of escape behavior in Drosophila melanogaster. Journal of Visualized Experiments : Jove. PMID 23380919 DOI: 10.3791/50192  1
2012 Hwa JJ, Clandinin TR. Apical-basal polarity proteins are required cell-type specifically to direct photoreceptor morphogenesis. Current Biology : Cb. 22: 2319-24. PMID 23159598 DOI: 10.1016/j.cub.2012.10.027  1
2012 Freifeld L, Clandinin TR. Visual transduction: microvilli orchestrate photoreceptor responses to light. Current Biology : Cb. 22: R595-7. PMID 22877777 DOI: 10.1016/j.cub.2012.07.001  1
2012 Schwabe T, Clandinin TR. Axon trapping: constructing the visual system one layer at a time. Neuron. 75: 6-8. PMID 22794255 DOI: 10.1016/J.Neuron.2012.06.020  1
2012 Bhalerao S, Clandinin TR. Cell biology. Vitamin K2 takes charge. Science (New York, N.Y.). 336: 1241-2. PMID 22679087 DOI: 10.1126/science.1223812  1
2012 de Vries SE, Clandinin TR. Loom-sensitive neurons link computation to action in the Drosophila visual system. Current Biology : Cb. 22: 353-62. PMID 22305754 DOI: 10.1016/j.cub.2012.01.007  1
2012 Wernet MF, Velez MM, Clark DA, Baumann-Klausener F, Brown JR, Klovstad M, Labhart T, Clandinin TR. Genetic dissection reveals two separate retinal substrates for polarization vision in Drosophila. Current Biology : Cb. 22: 12-20. PMID 22177904 DOI: 10.1016/j.cub.2011.11.028  1
2012 Gohl DM, Silies MA, Clandinin TR. Drosophila as a genetic model to investigate motion vision Neuromethods. 69: 201-221. DOI: 10.1007/978-1-61779-830-6-9  1
2011 Gontang AC, Hwa JJ, Mast JD, Schwabe T, Clandinin TR. The cytoskeletal regulator Genghis khan is required for columnar target specificity in the Drosophila visual system. Development (Cambridge, England). 138: 4899-909. PMID 22007130 DOI: 10.1242/Dev.069930  1
2011 Fitzgerald JE, Katsov AY, Clandinin TR, Schnitzer MJ. Symmetries in stimulus statistics shape the form of visual motion estimators. Proceedings of the National Academy of Sciences of the United States of America. 108: 12909-14. PMID 21768376 DOI: 10.1073/pnas.1015680108  1
2011 Clark DA, Bursztyn L, Horowitz MA, Schnitzer MJ, Clandinin TR. Defining the computational structure of the motion detector in Drosophila. Neuron. 70: 1165-77. PMID 21689602 DOI: 10.1016/j.neuron.2011.05.023  1
2011 Gohl DM, Silies MA, Gao XJ, Bhalerao S, Luongo FJ, Lin CC, Potter CJ, Clandinin TR. A versatile in vivo system for directed dissection of gene expression patterns. Nature Methods. 8: 231-7. PMID 21473015 DOI: 10.1038/Nmeth.1561  1
2010 Clark DA, de Vries SE, Clandinin TR. Watching the fly brain in action. Nature Methods. 7: 505-6. PMID 20588268 DOI: 10.1038/nmeth0710-505  1
2010 Huberman AD, Clandinin TR, Baier H. Molecular and cellular mechanisms of lamina-specific axon targeting. Cold Spring Harbor Perspectives in Biology. 2: a001743. PMID 20300211 DOI: 10.1101/cshperspect.a001743  1
2009 Prakash S, McLendon HM, Dubreuil CI, Ghose A, Hwa J, Dennehy KA, Tomalty KM, Clark KL, Van Vactor D, Clandinin TR. Complex interactions amongst N-cadherin, DLAR, and Liprin-alpha regulate Drosophila photoreceptor axon targeting. Developmental Biology. 336: 10-9. PMID 19766621 DOI: 10.1016/J.Ydbio.2009.09.016  1
2009 Clandinin TR, Feldheim DA. Making a visual map: mechanisms and molecules. Current Opinion in Neurobiology. 19: 174-80. PMID 19481440 DOI: 10.1016/j.conb.2009.04.011  1
2009 Schwabe T, Gontang AC, Clandinin TR. More than just glue: the diverse roles of cell adhesion molecules in the Drosophila nervous system. Cell Adhesion & Migration. 3: 36-42. PMID 19372748 DOI: 10.4161/Cam.3.1.6918  1
2008 Katsov AY, Clandinin TR. Motion processing streams in Drosophila are behaviorally specialized. Neuron. 59: 322-35. PMID 18667159 DOI: 10.1016/j.neuron.2008.05.022  1
2008 Mast JD, Tomalty KM, Vogel H, Clandinin TR. Reactive oxygen species act remotely to cause synapse loss in a Drosophila model of developmental mitochondrial encephalopathy. Development (Cambridge, England). 135: 2669-79. PMID 18599508 DOI: 10.1242/dev.020644  1
2008 Vélez MM, Clandinin TR. Neural circuitry: seeing the parts that make the picture. Current Biology : Cb. 18: R378-80. PMID 18460316 DOI: 10.1016/j.cub.2008.03.012  1
2008 Chen PL, Clandinin TR. The cadherin Flamingo mediates level-dependent interactions that guide photoreceptor target choice in Drosophila. Neuron. 58: 26-33. PMID 18400160 DOI: 10.1016/J.Neuron.2008.01.007  1
2006 Husain N, Pellikka M, Hong H, Klimentova T, Choe KM, Clandinin TR, Tepass U. The agrin/perlecan-related protein eyes shut is essential for epithelial lumen formation in the Drosophila retina. Developmental Cell. 11: 483-93. PMID 17011488 DOI: 10.1016/j.devcel.2006.08.012  1
2006 Hiesinger PR, Zhai RG, Zhou Y, Koh TW, Mehta SQ, Schulze KL, Cao Y, Verstreken P, Clandinin TR, Fischbach KF, Meinertzhagen IA, Bellen HJ. Activity-independent prespecification of synaptic partners in the visual map of Drosophila. Current Biology : Cb. 16: 1835-43. PMID 16979562 DOI: 10.1016/j.cub.2006.07.047  1
2006 Choe KM, Prakash S, Bright A, Clandinin TR. Liprin-alpha is required for photoreceptor target selection in Drosophila. Proceedings of the National Academy of Sciences of the United States of America. 103: 11601-6. PMID 16864799 DOI: 10.1073/Pnas.0601185103  1
2006 Katsov A, Clandinin TR. Insect vision: remembering the shape of things. Current Biology : Cb. 16: R369-71. PMID 16713946 DOI: 10.1016/j.cub.2006.04.006  1
2006 Mast JD, Prakash S, Chen PL, Clandinin TR. The mechanisms and molecules that connect photoreceptor axons to their targets in Drosophila. Seminars in Cell & Developmental Biology. 17: 42-9. PMID 16337412 DOI: 10.1016/J.Semcdb.2005.11.004  1
2005 Choe KM, Clandinin TR. Thinking about visual behavior; learning about photoreceptor function. Current Topics in Developmental Biology. 69: 187-213. PMID 16243600 DOI: 10.1016/S0070-2153(05)69007-2  1
2005 Nern A, Nguyen LV, Herman T, Prakash S, Clandinin TR, Zipursky SL. An isoform-specific allele of Drosophila N-cadherin disrupts a late step of R7 targeting. Proceedings of the National Academy of Sciences of the United States of America. 102: 12944-9. PMID 16123134 DOI: 10.1073/Pnas.0502888102  1
2005 Clandinin TR. Surprising twists to exocyst function. Neuron. 46: 164-6. PMID 15848794 DOI: 10.1016/j.neuron.2005.04.003  1
2005 Prakash S, Caldwell JC, Eberl DF, Clandinin TR. Drosophila N-cadherin mediates an attractive interaction between photoreceptor axons and their targets. Nature Neuroscience. 8: 443-50. PMID 15735641 DOI: 10.1038/Nn1415  1
2003 Lee RC, Clandinin TR, Lee CH, Chen PL, Meinertzhagen IA, Zipursky SL. The protocadherin Flamingo is required for axon target selection in the Drosophila visual system. Nature Neuroscience. 6: 557-63. PMID 12754514 DOI: 10.1038/Nn1063  1
2002 Clandinin TR, Zipursky SL. Making connections in the fly visual system. Neuron. 35: 827-41. PMID 12372279 DOI: 10.1016/S0896-6273(02)00876-0  1
2001 Clandinin TR, Lee CH, Herman T, Lee RC, Yang AY, Ovasapyan S, Zipursky SL. Drosophila LAR regulates R1-R6 and R7 target specificity in the visual system. Neuron. 32: 237-48. PMID 11683994 DOI: 10.1016/S0896-6273(01)00474-3  1
2001 Lee CH, Herman T, Clandinin TR, Lee R, Zipursky SL. N-cadherin regulates target specificity in the Drosophila visual system. Neuron. 30: 437-50. PMID 11395005 DOI: 10.1016/S0896-6273(01)00291-4  1
2000 Clandinin TR, Zipursky SL. Afferent growth cone interactions control synaptic specificity in the Drosophila visual system. Neuron. 28: 427-36. PMID 11144353 DOI: 10.1016/S0896-6273(00)00122-7  1
1998 Salecker I, Clandinin TR, Zipursky SL. Hedgehog and Spitz: making a match between photoreceptor axons and their targets. Cell. 95: 587-90. PMID 9845360 DOI: 10.1016/S0092-8674(00)81627-X  1
1998 Clandinin TR, DeModena JA, Sternberg PW. Inositol trisphosphate mediates a RAS-independent response to LET-23 receptor tyrosine kinase activation in C. elegans. Cell. 92: 523-33. PMID 9491893 DOI: 10.1016/S0092-8674(00)80945-9  1
1997 Clandinin TR, Katz WS, Sternberg PW. Caenorhabditis elegans HOM-C genes regulate the response of vulval precursor cells to inductive signal. Developmental Biology. 182: 150-61. PMID 9073457 DOI: 10.1006/dbio.1996.8471  1
1996 Katz WS, Lesa GM, Yannoukakos D, Clandinin TR, Schlessinger J, Sternberg PW. A point mutation in the extracellular domain activates LET-23, the Caenorhabditis elegans epidermal growth factor receptor homolog. Molecular and Cellular Biology. 16: 529-37. PMID 8552080 DOI: 10.1128/Mcb.16.2.529  1
1995 Sternberg PW, Lesa G, Lee J, Katz WS, Yoon C, Clandinin TR, Huang LS, Chamberlin HM, Jongeward G. LET-23-mediated signal transduction during Caenorhabditis elegans development. Molecular Reproduction and Development. 42: 523-8. PMID 8607985 DOI: 10.1002/mrd.1080420422  1
1995 Jongeward GD, Clandinin TR, Sternberg PW. sli-1, a negative regulator of let-23-mediated signaling in C. elegans. Genetics. 139: 1553-66. PMID 7789760  1
1995 Katz WS, Hill RJ, Clandinin TR, Sternberg PW. Different levels of the C. elegans growth factor LIN-3 promote distinct vulval precursor fates. Cell. 82: 297-307. PMID 7628018 DOI: 10.1016/0092-8674(95)90317-8  1
1993 Clandinin TR, Mains PE. Genetic studies of mei-1 gene activity during the transition from meiosis to mitosis in Caenorhabditis elegans. Genetics. 134: 199-210. PMID 8514128  0.12
1991 Clandinin MT, Cheema S, Field CJ, Garg ML, Venkatraman J, Clandinin TR. Dietary fat: exogenous determination of membrane structure and cell function. Faseb Journal : Official Publication of the Federation of American Societies For Experimental Biology. 5: 2761-9. PMID 1916101 DOI: 10.1096/Fasebj.5.13.1916101  0.4
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