Ai Yamamoto - Publications

Affiliations: 
2001 Columbia University, New York, NY 

49 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2024 Wu X, Wang Z, Croce KR, Li F, Cui J, D'Agati VD, Soni RK, Khalid S, Saleheen D, Tabas I, Yamamoto A, Zhang H. Macrophage WDFY3, a protector against autoimmunity. Biorxiv : the Preprint Server For Biology. PMID 39229152 DOI: 10.1101/2024.08.17.608411  0.762
2022 Shi J, Wu X, Wang Z, Li F, Meng Y, Moore RM, Cui J, Xue C, Croce KR, Yurdagul A, Doench JG, Li W, Zarbalis KS, Tabas I, Yamamoto A, et al. A genome-wide CRISPR screen identifies WDFY3 as a regulator of macrophage efferocytosis. Nature Communications. 13: 7929. PMID 36566259 DOI: 10.1038/s41467-022-35604-8  0.769
2022 Aber ER, Griffey CJ, Davies T, Li AM, Yang YJ, Croce KR, Goldman JE, Grutzendler J, Canman JC, Yamamoto A. Oligodendroglial macroautophagy is essential for myelin sheath turnover to prevent neurodegeneration and death. Cell Reports. 41: 111480. PMID 36261002 DOI: 10.1016/j.celrep.2022.111480  0.706
2022 Griffey CJ, Yamamoto A. Macroautophagy in CNS health and disease. Nature Reviews. Neuroscience. PMID 35505254 DOI: 10.1038/s41583-022-00588-3  0.788
2022 Griffey CJ, Yamamoto A. Living in α-syn: Tackling aggregates in Parkinson's disease. Neuron. 110: 351-352. PMID 35114103 DOI: 10.1016/j.neuron.2022.01.016  0.784
2022 Søreng K, Pankiv S, Bergsmark C, Haugsten EM, Dahl AK, de la Ballina LR, Yamamoto A, Lystad AH, Simonsen A. ALFY localizes to early endosomes and cellular protrusions to facilitate directional cell migration. Journal of Cell Science. 135. PMID 35099014 DOI: 10.1242/jcs.259138  0.303
2021 Croce KR, Yamamoto A. Dissolving the Complex Role Aggregation Plays in Neurodegenerative Disease. Movement Disorders : Official Journal of the Movement Disorder Society. PMID 33755257 DOI: 10.1002/mds.28522  0.815
2020 Fox L, Yamamoto A. Examining aggregates through the eyes of WDFY3/Alfy. Autophagy. PMID 32150493 DOI: 10.1080/15548627.2020.1739448  0.814
2020 Lieberman OJ, Frier MD, McGuirt AF, Griffey CJ, Rafikian E, Yang M, Yamamoto A, Borgkvist A, Santini E, Sulzer D. Cell-type specific regulation of neuronal intrinsic excitability by macroautophagy. Elife. 9. PMID 31913125 DOI: 10.7554/Elife.50843  0.763
2020 Lieberman OJ, Frier MD, McGuirt AF, Griffey CJ, Rafikian E, Yang M, Yamamoto A, Borgkvist A, Santini E, Sulzer D. Author response: Cell-type-specific regulation of neuronal intrinsic excitability by macroautophagy Elife. DOI: 10.7554/Elife.50843.Sa2  0.326
2019 Fox LM, Kim K, Johnson CW, Chen S, Croce KR, Victor MB, Eenjes E, Bosco JR, Randolph LK, Dragatsis I, Dragich JM, Yoo AS, Yamamoto A. Huntington's Disease Pathogenesis Is Modified In Vivo by Alfy/Wdfy3 and Selective Macroautophagy. Neuron. PMID 31899071 DOI: 10.1016/J.Neuron.2019.12.003  0.751
2019 Princely Abudu Y, Pankiv S, Mathai BJ, Håkon Lystad A, Bindesbøll C, Brenne HB, Yoke Wui Ng M, Thiede B, Yamamoto A, Mutugi Nthiga T, Lamark T, Esguerra CV, Johansen T, Simonsen A. NIPSNAP1 and NIPSNAP2 Act as "Eat Me" Signals for Mitophagy. Developmental Cell. PMID 30982665 DOI: 10.1016/J.Devcel.2019.03.013  0.385
2019 Eenjes E, Yang-Klingler YJ, Yamamoto A. Monitoring Aggregate Clearance and Formation in Cell-Based Assays. Methods in Molecular Biology (Clifton, N.J.). 1873: 157-169. PMID 30341608 DOI: 10.1007/978-1-4939-8820-4_9  0.753
2018 Croce KR, Yamamoto A. A role for autophagy in Huntington's disease. Neurobiology of Disease. PMID 30149183 DOI: 10.1016/J.Nbd.2018.08.010  0.802
2016 Dragich JM, Kuwajima T, Hirose-Ikeda M, Yoon MS, Eenjes E, Bosco JR, Fox LM, Lystad AH, Oo TF, Yarygina O, Mita T, Waguri S, Ichimura Y, Komatsu M, Simonsen A, ... ... Yamamoto A, et al. Autophagy linked FYVE (Alfy/WDFY3) is required for establishing neuronal connectivity in the mammalian brain. Elife. 5. PMID 27648578 DOI: 10.7554/Elife.14810  0.774
2016 Eenjes E, Dragich JM, Kampinga HH, Yamamoto A. Distinguishing aggregate formation and aggregate clearance using cell based assays. Journal of Cell Science. PMID 26818841 DOI: 10.1242/Jcs.179978  0.78
2016 Klionsky DJ, Abdelmohsen K, Abe A, Abedin MJ, Abeliovich H, Acevedo Arozena A, Adachi H, Adams CM, Adams PD, Adeli K, Adhihetty PJ, Adler SG, Agam G, Agarwal R, Aghi MK, ... ... Yamamoto A, et al. Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition). Autophagy. 12: 1-222. PMID 26799652 DOI: 10.1080/15548627.2015.1100356  0.352
2016 Dragich JM, Kuwajima T, Hirose-Ikeda M, Yoon MS, Eenjes E, Bosco JR, Fox LM, Lystad AH, Oo TF, Yarygina O, Mita T, Waguri S, Ichimura Y, Komatsu M, Simonsen A, ... ... Yamamoto A, et al. Author response: Autophagy linked FYVE (Alfy/WDFY3) is required for establishing neuronal connectivity in the mammalian brain Elife. DOI: 10.7554/Elife.14810.026  0.743
2016 Eenjes E, Dragich JM, Kampinga HH, Yamamoto A. Distinguishing aggregate formation and aggregate clearance using cell-based assays Journal of Cell Science. 129: 1260-1270. DOI: 10.1242/jcs.179978  0.749
2014 Yang XW, Yamamoto A. CLEARance wars: PolyQ strikes back. Nature Neuroscience. 17: 1140-2. PMID 25157508 DOI: 10.1038/Nn.3793  0.334
2014 Tang G, Gudsnuk K, Kuo SH, Cotrina ML, Rosoklija G, Sosunov A, Sonders MS, Kanter E, Castagna C, Yamamoto A, Yue Z, Arancio O, Peterson BS, Champagne F, Dwork AJ, et al. Loss of mTOR-dependent macroautophagy causes autistic-like synaptic pruning deficits. Neuron. 83: 1131-43. PMID 25155956 DOI: 10.1016/J.Neuron.2014.07.040  0.333
2014 Prè D, Nestor MW, Sproul AA, Jacob S, Koppensteiner P, Chinchalongporn V, Zimmer M, Yamamoto A, Noggle SA, Arancio O. A time course analysis of the electrophysiological properties of neurons differentiated from human induced pluripotent stem cells (iPSCs). Plos One. 9: e103418. PMID 25072157 DOI: 10.1371/Journal.Pone.0103418  0.314
2014 Yamamoto A, Yue Z. Autophagy and its normal and pathogenic states in the brain. Annual Review of Neuroscience. 37: 55-78. PMID 24821313 DOI: 10.1146/Annurev-Neuro-071013-014149  0.434
2014 Nath S, Dancourt J, Shteyn V, Puente G, Fong WM, Nag S, Bewersdorf J, Yamamoto A, Antonny B, Melia TJ. Lipidation of the LC3/GABARAP family of autophagy proteins relies on a membrane-curvature-sensing domain in Atg3. Nature Cell Biology. 16: 415-24. PMID 24747438 DOI: 10.1038/Ncb2940  0.738
2013 Kuo SH, Tang G, Louis ED, Ma K, Babji R, Balatbat M, Cortes E, Vonsattel JP, Yamamoto A, Sulzer D, Faust PL. Lingo-1 expression is increased in essential tremor cerebellum and is present in the basket cell pinceau. Acta Neuropathologica. 125: 879-89. PMID 23543187 DOI: 10.1007/S00401-013-1108-7  0.318
2013 Shoji-Kawata S, Sumpter R, Leveno M, Campbell GR, Zou Z, Kinch L, Wilkins AD, Sun Q, Pallauf K, MacDuff D, Huerta C, Virgin HW, Helms JB, Eerland R, Tooze SA, ... ... Yamamoto A, et al. Identification of a candidate therapeutic autophagy-inducing peptide. Nature. 494: 201-6. PMID 23364696 DOI: 10.1038/Nature11866  0.325
2013 Pizzo AB, Karam CS, Zhang Y, Yano H, Freyberg RJ, Karam DS, Freyberg Z, Yamamoto A, McCabe BD, Javitch JA. The membrane raft protein Flotillin-1 is essential in dopamine neurons for amphetamine-induced behavior in Drosophila. Molecular Psychiatry. 18: 824-33. PMID 22710269 DOI: 10.1038/Mp.2012.82  0.309
2013 Nath S, Dancourt J, Puente G, Nag S, Yamamoto A, Antonny B, Melia T. The Lipidation Machinery Involved in Autophagosome Growth is Only Functional on Highly Curved Membranes Biophysical Journal. 104: 97a. DOI: 10.1016/J.Bpj.2012.11.576  0.327
2012 Klionsky DJ, Abdalla FC, Abeliovich H, Abraham RT, Acevedo-Arozena A, Adeli K, Agholme L, Agnello M, Agostinis P, Aguirre-Ghiso JA, Ahn HJ, Ait-Mohamed O, Ait-Si-Ali S, Akematsu T, Akira S, ... ... Yamamoto A, ... ... Yamamoto A, et al. Guidelines for the use and interpretation of assays for monitoring autophagy. Autophagy. 8: 445-544. PMID 22966490 DOI: 10.4161/Auto.19496  0.304
2012 Johnson CW, Melia TJ, Yamamoto A. Modulating macroautophagy: a neuronal perspective. Future Medicinal Chemistry. 4: 1715-31. PMID 22924509 DOI: 10.4155/Fmc.12.112  0.416
2012 Mijaljica D, Nazarko TY, Brumell JH, Huang WP, Komatsu M, Prescott M, Simonsen A, Yamamoto A, Zhang H, Klionsky DJ, Devenish RJ. Receptor protein complexes are in control of autophagy. Autophagy. 8: 1701-5. PMID 22874568 DOI: 10.4161/Auto.21332  0.325
2011 Cremona ML, Matthies HJ, Pau K, Bowton E, Speed N, Lute BJ, Anderson M, Sen N, Robertson SD, Vaughan RA, Rothman JE, Galli A, Javitch JA, Yamamoto A. Flotillin-1 is essential for PKC-triggered endocytosis and membrane microdomain localization of DAT. Nature Neuroscience. 14: 469-77. PMID 21399631 DOI: 10.1038/Nn.2781  0.5
2011 Yamamoto A, Simonsen A. Alfy-dependent elimination of aggregated proteins by macroautophagy: can there be too much of a good thing? Autophagy. 7: 346-50. PMID 21150266 DOI: 10.4161/Auto.7.3.14234  0.417
2011 Yamamoto A, Simonsen A. The elimination of accumulated and aggregated proteins: a role for aggrephagy in neurodegeneration. Neurobiology of Disease. 43: 17-28. PMID 20732422 DOI: 10.1016/J.Nbd.2010.08.015  0.469
2011 Cremona ML, Matthies HJG, Pau K, Bowton E, Speed N, Lute BJ, Anderson M, Sen N, Robertson SD, Vaughan RA, Rothman JE, Galli A, Javitch JA, Yamamoto A. Erratum: Corrigendum: Flotillin-1 is essential for PKC-triggered endocytosis and membrane microdomain localization of DAT Nature Neuroscience. 14: 1617-1617. DOI: 10.1038/Nn1211-1617A  0.464
2010 Filimonenko M, Isakson P, Finley KD, Anderson M, Jeong H, Melia TJ, Bartlett BJ, Myers KM, Birkeland HC, Lamark T, Krainc D, Brech A, Stenmark H, Simonsen A, Yamamoto A. The selective macroautophagic degradation of aggregated proteins requires the PI3P-binding protein Alfy. Molecular Cell. 38: 265-79. PMID 20417604 DOI: 10.1016/J.Molcel.2010.04.007  0.421
2009 Jeong H, Then F, Melia TJ, Mazzulli JR, Cui L, Savas JN, Voisine C, Paganetti P, Tanese N, Hart AC, Yamamoto A, Krainc D. Acetylation targets mutant huntingtin to autophagosomes for degradation. Cell. 137: 60-72. PMID 19345187 DOI: 10.1016/J.Cell.2009.03.018  0.43
2009 Rinderspacher A, Cremona ML, Liu Y, Deng SX, Xie Y, Gong G, Aulner N, Többen U, Myers K, Chung C, Andersen M, Vidović D, Schürer S, Brandén L, Yamamoto A, et al. Potent inhibitors of Huntingtin protein aggregation in a cell-based assay. Bioorganic & Medicinal Chemistry Letters. 19: 1715-7. PMID 19243939 DOI: 10.1016/J.Bmcl.2009.01.087  0.331
2009 Liu W, Vives-Bauza C, Acín-Peréz- R, Yamamoto A, Tan Y, Li Y, Magrané J, Stavarache MA, Shaffer S, Chang S, Kaplitt MG, Huang XY, Beal MF, Manfredi G, Li C. PINK1 defect causes mitochondrial dysfunction, proteasomal deficit and alpha-synuclein aggregation in cell culture models of Parkinson's disease. Plos One. 4: e4597. PMID 19242547 DOI: 10.1371/Journal.Pone.0004597  0.34
2009 Tareste D, Yamamoto A, Melia T. Membrane Fusion in Autophagy Biophysical Journal. 96: 359a. DOI: 10.1016/J.Bpj.2008.12.1811  0.338
2008 Giraudo CG, Garcia-Diaz A, Eng WS, Yamamoto A, Melia TJ, Rothman JE. Distinct domains of complexins bind SNARE complexes and clamp fusion in vitro. The Journal of Biological Chemistry. 283: 21211-9. PMID 18499660 DOI: 10.1074/Jbc.M803478200  0.499
2007 Filimonenko M, Stuffers S, Raiborg C, Yamamoto A, Malerød L, Fisher EM, Isaacs A, Brech A, Stenmark H, Simonsen A. Functional multivesicular bodies are required for autophagic clearance of protein aggregates associated with neurodegenerative disease. The Journal of Cell Biology. 179: 485-500. PMID 17984323 DOI: 10.1083/Jcb.200702115  0.463
2006 Yamamoto A, Cremona ML, Rothman JE. Autophagy-mediated clearance of huntingtin aggregates triggered by the insulin-signaling pathway. The Journal of Cell Biology. 172: 719-31. PMID 16505167 DOI: 10.1083/Jcb.200510065  0.595
2002 Lastres-Becker I, Berrendero F, Lucas JJ, Martín-Aparicio E, Yamamoto A, Ramos JA, Fernández-Ruiz JJ. Loss of mRNA levels, binding and activation of GTP-binding proteins for cannabinoid CB1 receptors in the basal ganglia of a transgenic model of Huntington's disease. Brain Research. 929: 236-42. PMID 11864629 DOI: 10.1016/S0006-8993(01)03403-5  0.327
2001 Yamamoto A, Hen R, Dauer WT. The ons and offs of inducible transgenic technology: a review. Neurobiology of Disease. 8: 923-32. PMID 11741388 DOI: 10.1006/Nbdi.2001.0452  0.539
2001 Martín-Aparicio E, Yamamoto A, Hernández F, Hen R, Avila J, Lucas JJ. Proteasomal-dependent aggregate reversal and absence of cell death in a conditional mouse model of Huntington's disease. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 21: 8772-81. PMID 11698589 DOI: 10.1523/Jneurosci.21-22-08772.2001  0.612
2000 Yamamoto A, Lucas JJ, Hen R. Reversal of neuropathology and motor dysfunction in a conditional model of Huntington's disease. Cell. 101: 57-66. PMID 10778856 DOI: 10.1016/S0092-8674(00)80623-6  0.596
2000 Battaglla E, Yamamoto A, Girlanda P, Vita G, Toscano A, Hen R, Arancio O. Impaired long-term potentiation in a conditional model of huntington's disease Neurological Sciences. 21: S134-S135.  0.413
1998 Lucas JJ, Yamamoto A, Scearce-Levie K, Saudou F, Hen R. Absence of fenfluramine-induced anorexia and reduced c-Fos induction in the hypothalamus and central amygdaloid complex of serotonin 1B receptor knock-out mice. The Journal of Neuroscience : the Official Journal of the Society For Neuroscience. 18: 5537-44. PMID 9651234 DOI: 10.1523/Jneurosci.18-14-05537.1998  0.74
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