Year |
Citation |
Score |
2022 |
Ketcham A, Freddolino PL, Tavazoie S. Intracellular acidification is a hallmark of thymineless death in E. coli. Plos Genetics. 18: e1010456. PMID 36279294 DOI: 10.1371/journal.pgen.1010456 |
0.588 |
|
2022 |
Freddolino PL, Amemiya HM, Goss TJ, Tavazoie S. Correction: Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 20: e3001557. PMID 35476699 DOI: 10.1371/journal.pbio.3001557 |
0.528 |
|
2021 |
Freddolino PL, Amemiya HM, Goss TJ, Tavazoie S. Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 19: e3001306. PMID 34170902 DOI: 10.1371/journal.pbio.3001306 |
0.649 |
|
2021 |
Freddolino PL, Amemiya HM, Goss TJ, Tavazoie S. Dynamic landscape of protein occupancy across the Escherichia coli chromosome. Plos Biology. 19: e3001306. PMID 34170902 DOI: 10.1371/journal.pbio.3001306 |
0.649 |
|
2020 |
Momen-Roknabadi A, Oikonomou P, Zegans M, Tavazoie S. An inducible CRISPR interference library for genetic interrogation of Saccharomyces cerevisiae biology. Communications Biology. 3: 723. PMID 33247197 DOI: 10.1038/s42003-020-01452-9 |
0.323 |
|
2020 |
Blattman SB, Jiang W, Oikonomou P, Tavazoie S. Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing. Nature Microbiology. PMID 32451472 DOI: 10.1038/S41564-020-0729-6 |
0.38 |
|
2020 |
Jiang W, Oikonomou P, Tavazoie S. Comprehensive Genome-wide Perturbations via CRISPR Adaptation Reveal Complex Genetics of Antibiotic Sensitivity. Cell. PMID 32109417 DOI: 10.1016/J.Cell.2020.02.007 |
0.421 |
|
2020 |
Khare A, Tavazoie S. Extreme Antibiotic Persistence via Heterogeneity-Generating Mutations Targeting Translation. Msystems. 5. PMID 31964772 DOI: 10.1128/mSystems.00847-19 |
0.777 |
|
2019 |
Vejnar CE, Abdelmessih M, Takacs C, Yartseva V, Oikonomou P, Christiano R, Stoeckius M, Lau S, Lee M, Beaudoin JD, Musaev D, Darwich-Codore H, Walther T, Tavazoie S, Cifuentes D, et al. Genome wide analysis of 3'-UTR sequence elements and proteins regulating mRNA stability during maternal-to-zygotic transition in zebrafish. Genome Research. PMID 31227602 DOI: 10.1101/Gr.245159.118 |
0.406 |
|
2018 |
Masoudi N, Tavazoie S, Glenwinkel L, Ryu L, Kim K, Hobert O. Unconventional function of an Achaete-Scute homolog as a terminal selector of nociceptive neuron identity. Plos Biology. 16: e2004979. PMID 29672507 DOI: 10.1371/Journal.Pbio.2004979 |
0.329 |
|
2018 |
Freddolino PL, Yang J, Momen-Roknabadi A, Tavazoie S. Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry. Elife. 7. PMID 29620524 DOI: 10.7554/Elife.31867 |
0.67 |
|
2018 |
Freddolino PL, Yang J, Momen-Roknabadi A, Tavazoie S. Author response: Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry Elife. DOI: 10.7554/Elife.31867.052 |
0.645 |
|
2016 |
Fish L, Pencheva N, Goodarzi H, Tran H, Yoshida M, Tavazoie SF. Muscleblind-like 1 suppresses breast cancer metastatic colonization and stabilizes metastasis suppressor transcripts. Genes & Development. 30: 386-98. PMID 26883358 DOI: 10.1101/Gad.270645.115 |
0.62 |
|
2015 |
Khare A, Tavazoie S. Multifactorial Competition and Resistance in a Two-Species Bacterial System. Plos Genetics. 11: e1005715. PMID 26647077 DOI: 10.1371/Journal.Pgen.1005715 |
0.777 |
|
2015 |
Alarcón CR, Goodarzi H, Lee H, Liu X, Tavazoie S, Tavazoie SF. HNRNPA2B1 Is a Mediator of m(6)A-Dependent Nuclear RNA Processing Events. Cell. PMID 26321680 DOI: 10.1016/J.Cell.2015.08.011 |
0.622 |
|
2015 |
Furlow PW, Zhang S, Soong TD, Halberg N, Goodarzi H, Mangrum C, Wu YG, Elemento O, Tavazoie SF. Mechanosensitive pannexin-1 channels mediate microvascular metastatic cell survival. Nature Cell Biology. PMID 26098574 DOI: 10.1038/ncb3194 |
0.64 |
|
2015 |
Goodarzi H, Liu X, Nguyen HC, Zhang S, Fish L, Tavazoie SF. Endogenous tRNA-Derived Fragments Suppress Breast Cancer Progression via YBX1 Displacement. Cell. 161: 790-802. PMID 25957686 DOI: 10.1016/J.Cell.2015.02.053 |
0.608 |
|
2015 |
Alarcón CR, Lee H, Goodarzi H, Halberg N, Tavazoie SF. N6-methyladenosine marks primary microRNAs for processing. Nature. 519: 482-5. PMID 25799998 DOI: 10.1038/Nature14281 |
0.561 |
|
2014 |
Goodarzi H, Tavazoie SF, Tavazoie S. TARBP2 binding structured RNA elements drives metastasis. Cell Cycle (Georgetown, Tex.). 13: 2799-800. PMID 25486461 DOI: 10.4161/15384101.2014.954453 |
0.701 |
|
2014 |
Goodarzi H, Zhang S, Buss CG, Fish L, Tavazoie S, Tavazoie SF. Metastasis-suppressor transcript destabilization through TARBP2 binding of mRNA hairpins. Nature. 513: 256-60. PMID 25043050 DOI: 10.1038/Nature13466 |
0.673 |
|
2014 |
Oikonomou P, Goodarzi H, Tavazoie S. Systematic identification of regulatory elements in conserved 3' UTRs of human transcripts. Cell Reports. 7: 281-92. PMID 24656821 DOI: 10.1016/J.Celrep.2014.03.001 |
0.77 |
|
2014 |
Freddolino PL, Goodarzi H, Tavazoie S. Revealing the genetic basis of natural bacterial phenotypic divergence. Journal of Bacteriology. 196: 825-39. PMID 24317396 DOI: 10.1128/Jb.01039-13 |
0.73 |
|
2013 |
Hottes AK, Freddolino PL, Khare A, Donnell ZN, Liu JC, Tavazoie S. Bacterial adaptation through loss of function. Plos Genetics. 9: e1003617. PMID 23874220 DOI: 10.1371/Journal.Pgen.1003617 |
0.758 |
|
2013 |
Chiu IM, Morimoto ET, Goodarzi H, Liao JT, O'Keeffe S, Phatnani HP, Muratet M, Carroll MC, Levy S, Tavazoie S, Myers RM, Maniatis T. A neurodegeneration-specific gene-expression signature of acutely isolated microglia from an amyotrophic lateral sclerosis mouse model. Cell Reports. 4: 385-401. PMID 23850290 DOI: 10.1016/J.Celrep.2013.06.018 |
0.628 |
|
2013 |
Freddolino P, Tavazoie S. Genome-Wide Measurement of Bacterial Transcriptional Regulatory States Biophysical Journal. 104: 328a. DOI: 10.1016/J.Bpj.2012.11.1820 |
0.691 |
|
2012 |
Freddolino PL, Tavazoie S. The dawn of virtual cell biology. Cell. 150: 248-50. PMID 22817888 DOI: 10.1016/J.Cell.2012.07.001 |
0.593 |
|
2012 |
Girgis HS, Harris K, Tavazoie S. Large mutational target size for rapid emergence of bacterial persistence. Proceedings of the National Academy of Sciences of the United States of America. 109: 12740-5. PMID 22802628 DOI: 10.1073/Pnas.1205124109 |
0.369 |
|
2012 |
Freddolino PL, Goodarzi H, Tavazoie S. Fitness landscape transformation through a single amino acid change in the rho terminator. Plos Genetics. 8: e1002744. PMID 22693458 DOI: 10.1371/Journal.Pgen.1002744 |
0.75 |
|
2012 |
Freddolino PL, Tavazoie S. Beyond homeostasis: a predictive-dynamic framework for understanding cellular behavior. Annual Review of Cell and Developmental Biology. 28: 363-84. PMID 22559263 DOI: 10.1146/Annurev-Cellbio-092910-154129 |
0.611 |
|
2012 |
Goodarzi H, Najafabadi HS, Oikonomou P, Greco TM, Fish L, Salavati R, Cristea IM, Tavazoie S. Systematic discovery of structural elements governing stability of mammalian messenger RNAs. Nature. 485: 264-8. PMID 22495308 DOI: 10.1038/Nature11013 |
0.769 |
|
2012 |
Freddolino PL, Amini S, Tavazoie S. Newly identified genetic variations in common Escherichia coli MG1655 stock cultures. Journal of Bacteriology. 194: 303-6. PMID 22081388 DOI: 10.1128/Jb.06087-11 |
0.636 |
|
2011 |
Amini S, Hottes AK, Smith LE, Tavazoie S. Fitness landscape of antibiotic tolerance in Pseudomonas aeruginosa biofilms. Plos Pathogens. 7: e1002298. PMID 22028649 DOI: 10.1371/Journal.Ppat.1002298 |
0.322 |
|
2011 |
Birsoy K, Berry R, Wang T, Ceyhan O, Tavazoie S, Friedman JM, Rodeheffer MS. Analysis of gene networks in white adipose tissue development reveals a role for ETS2 in adipogenesis. Development (Cambridge, England). 138: 4709-19. PMID 21989915 DOI: 10.1242/Jcs.101436 |
0.386 |
|
2011 |
Amini S, Tavazoie S. Antibiotics and the post-genome revolution. Current Opinion in Microbiology. 14: 513-8. PMID 21816663 DOI: 10.1016/J.Mib.2011.07.017 |
0.359 |
|
2011 |
Hottes AK, Tavazoie S. Microarray-based genetic footprinting strategy to identify strain improvement genes after competitive selection of transposon libraries. Methods in Molecular Biology (Clifton, N.J.). 765: 83-97. PMID 21815088 DOI: 10.1007/978-1-61779-197-0_6 |
0.356 |
|
2010 |
Lieber DS, Elemento O, Tavazoie S. Large-scale discovery and characterization of protein regulatory motifs in eukaryotes. Plos One. 5: e14444. PMID 21206902 DOI: 10.1371/Journal.Pone.0014444 |
0.535 |
|
2010 |
Goodarzi H, Bennett BD, Amini S, Reaves ML, Hottes AK, Rabinowitz JD, Tavazoie S. Regulatory and metabolic rewiring during laboratory evolution of ethanol tolerance in E. coli. Molecular Systems Biology. 6: 378. PMID 20531407 DOI: 10.1038/Msb.2010.33 |
0.619 |
|
2009 |
Goodarzi H, Elemento O, Tavazoie S. Revealing global regulatory perturbations across human cancers. Molecular Cell. 36: 900-11. PMID 20005852 DOI: 10.1016/J.Molcel.2009.11.016 |
0.716 |
|
2009 |
Vora T, Hottes AK, Tavazoie S. Protein occupancy landscape of a bacterial genome. Molecular Cell. 35: 247-53. PMID 19647521 DOI: 10.1016/J.Molcel.2009.06.035 |
0.376 |
|
2009 |
Goodarzi H, Hottes AK, Tavazoie S. Global discovery of adaptive mutations. Nature Methods. 6: 581-3. PMID 19597501 DOI: 10.1038/Nmeth.1352 |
0.641 |
|
2009 |
Lu X, Li JM, Elemento O, Tavazoie S, Wieschaus EF. Coupling of zygotic transcription to mitotic control at the Drosophila mid-blastula transition. Development (Cambridge, England). 136: 2101-10. PMID 19465600 DOI: 10.1242/Dev.034421 |
0.521 |
|
2009 |
Girgis HS, Hottes AK, Tavazoie S. Genetic architecture of intrinsic antibiotic susceptibility. Plos One. 4: e5629. PMID 19462005 DOI: 10.1371/Journal.Pone.0005629 |
0.307 |
|
2009 |
Amini S, Goodarzi H, Tavazoie S. Genetic dissection of an exogenously induced biofilm in laboratory and clinical isolates of E. coli. Plos Pathogens. 5: e1000432. PMID 19436718 DOI: 10.1371/Journal.Ppat.1000432 |
0.622 |
|
2009 |
Freckleton G, Lippman SI, Broach JR, Tavazoie S. Microarray profiling of phage-display selections for rapid mapping of transcription factor-DNA interactions. Plos Genetics. 5: e1000449. PMID 19360118 DOI: 10.1371/Journal.Pgen.1000449 |
0.391 |
|
2009 |
Legesse-Miller A, Elemento O, Pfau SJ, Forman JJ, Tavazoie S, Coller HA. let-7 Overexpression leads to an increased fraction of cells in G2/M, direct down-regulation of Cdc34, and stabilization of Wee1 kinase in primary fibroblasts. The Journal of Biological Chemistry. 284: 6605-9. PMID 19126550 DOI: 10.1074/Jbc.C900002200 |
0.53 |
|
2008 |
Tagkopoulos I, Liu YC, Tavazoie S. Predictive behavior within microbial genetic networks. Science (New York, N.Y.). 320: 1313-7. PMID 18467556 DOI: 10.3731/Topologica.2.018 |
0.652 |
|
2007 |
Elemento O, Tavazoie S. Fastcompare: a nonalignment approach for genome-scale discovery of DNA and mRNA regulatory elements using network-level conservation. Methods in Molecular Biology (Clifton, N.J.). 395: 349-66. PMID 17993685 DOI: 10.1385/1-59745-514-8:349 |
0.517 |
|
2007 |
Elemento O, Slonim N, Tavazoie S. A universal framework for regulatory element discovery across all genomes and data types. Molecular Cell. 28: 337-50. PMID 17964271 DOI: 10.1016/J.Molcel.2007.09.027 |
0.774 |
|
2007 |
Girgis HS, Liu Y, Ryu WS, Tavazoie S. A comprehensive genetic characterization of bacterial motility. Plos Genetics. 3: 1644-60. PMID 17941710 DOI: 10.1371/Journal.Pgen.0030154 |
0.429 |
|
2007 |
De Renzis S, Elemento O, Tavazoie S, Wieschaus EF. Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo. Plos Biology. 5: e117. PMID 17456005 DOI: 10.1371/Journal.Pbio.0050117 |
0.56 |
|
2007 |
Lahav R, Gammie A, Tavazoie S, Rose MD. Role of transcription factor Kar4 in regulating downstream events in the Saccharomyces cerevisiae pheromone response pathway. Molecular and Cellular Biology. 27: 818-29. PMID 17101777 DOI: 10.1128/Mcb.00439-06 |
0.431 |
|
2006 |
Slonim N, Elemento O, Tavazoie S. Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks. Molecular Systems Biology. 2: 2006.0005. PMID 16732191 DOI: 10.1038/Msb4100047 |
0.745 |
|
2005 |
Chan CS, Elemento O, Tavazoie S. Revealing posttranscriptional regulatory elements through network-level conservation. Plos Computational Biology. 1: e69. PMID 16355253 DOI: 10.1371/Journal.Pcbi.0010069 |
0.681 |
|
2005 |
Elemento O, Tavazoie S. Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach. Genome Biology. 6: R18. PMID 15693947 DOI: 10.1186/Gb-2005-6-2-R18 |
0.548 |
|
2005 |
Chan C, Elemento O, Tavazoie S. Revealing post-transcriptional regulatory interactions through network-level conservation Plos Computational Biology. DOI: 10.1371/Journal.Pcbi.0010069.Eor |
0.337 |
|
2004 |
Kurdistani SK, Tavazoie S, Grunstein M. Mapping global histone acetylation patterns to gene expression. Cell. 117: 721-33. PMID 15186774 DOI: 10.1016/J.Cell.2004.05.023 |
0.373 |
|
2004 |
Wang Y, Pierce M, Schneper L, Güldal CG, Zhang X, Tavazoie S, Broach JR. Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast. Plos Biology. 2: E128. PMID 15138498 DOI: 10.1371/Journal.Pbio.0020128 |
0.332 |
|
2004 |
Beer MA, Tavazoie S. Predicting gene expression from sequence. Cell. 117: 185-98. PMID 15084257 DOI: 10.1016/S0092-8674(04)00304-6 |
0.651 |
|
2004 |
Jim K, Parmar K, Singh M, Tavazoie S. A cross-genomic approach for systematic mapping of phenotypic traits to genes. Genome Research. 14: 109-15. PMID 14707173 DOI: 10.1101/Gr.1586704 |
0.388 |
|
2004 |
Pritsker M, Liu YC, Beer MA, Tavazoie S. Whole-genome discovery of transcription factor binding sites by network-level conservation. Genome Research. 14: 99-108. PMID 14672978 DOI: 10.1101/Gr.1739204 |
0.63 |
|
2002 |
Kurdistani SK, Robyr D, Tavazoie S, Grunstein M. Genome-wide binding map of the histone deacetylase Rpd3 in yeast. Nature Genetics. 31: 248-54. PMID 12089521 DOI: 10.1038/Ng907 |
0.427 |
|
2001 |
Badarinarayana V, Estep PW, Shendure J, Edwards J, Tavazoie S, Lam F, Church GM. Selection analyses of insertional mutants using subgenic-resolution arrays. Nature Biotechnology. 19: 1060-5. PMID 11689852 DOI: 10.1038/Nbt1101-1060 |
0.777 |
|
2000 |
Hughes JD, Estep PW, Tavazoie S, Church GM. Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae. Journal of Molecular Biology. 296: 1205-14. PMID 10698627 DOI: 10.1006/Jmbi.2000.3519 |
0.784 |
|
1999 |
Tavazoie S, Hughes JD, Campbell MJ, Cho RJ, Church GM. Systematic determination of genetic network architecture. Nature Genetics. 22: 281-5. PMID 10391217 DOI: 10.1038/10343 |
0.698 |
|
1998 |
Tavazoie S, Church GM. Quantitative whole-genome analysis of DNA-protein interactions by in vivo methylase protection in E. coli. Nature Biotechnology. 16: 566-71. PMID 9624689 DOI: 10.1038/Nbt0698-566 |
0.549 |
|
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