Todd Treangen
Affiliations: | 2010-2012 | Computer Science | University of Maryland, College Park, College Park, MD |
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Sign in to add trainee| Yilei Fu | grad student | 2019-2023 | Rice University |
| Austin G. Marshall | post-doc | Rice University |
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Publications
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| Wu CT, Shropshire WC, Bhatti MM, et al. (2024) Rapid Whole Genome Characterization of High-Risk Pathogens Using Long-Read Sequencing to Identify Potential Healthcare Transmission. Medrxiv : the Preprint Server For Health Sciences |
| Amaral WZ, Kokroko N, Treangen TJ, et al. (2024) Probiotic therapy modulates the brain-gut-liver microbiota axis in a mouse model of traumatic brain injury. Biochimica Et Biophysica Acta. Molecular Basis of Disease. 1870: 167483 |
| Wang MX, Lou EG, Sapoval N, et al. (2024) Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens. Nature Communications. 15: 6306 |
| Flinn H, Marshall A, Holcomb M, et al. (2024) Antibiotic treatment induces microbiome dysbiosis and reduction of neuroinflammation following traumatic brain injury in mice. Research Square |
| Curry KD, Yu FB, Vance SE, et al. (2024) Reference-free structural variant detection in microbiomes via long-read co-assembly graphs. Bioinformatics (Oxford, England). 40: i58-i67 |
| Luan T, Cepeda V, Liu B, et al. (2024) MetaCompass: Reference-guided Assembly of Metagenomes. Arxiv |
| Sapoval N, Liu Y, Curry KD, et al. (2024) Lightweight taxonomic profiling of long-read sequenced metagenomes with Lemur and Magnet. Biorxiv : the Preprint Server For Biology |
| Kille B, Nute MG, Huang V, et al. (2024) Parsnp 2.0: Scalable Core-Genome alignment for massive microbial datasets. Bioinformatics (Oxford, England) |
| Agustinho DP, Fu Y, Menon VK, et al. (2024) Unveiling microbial diversity: harnessing long-read sequencing technology. Nature Methods |
| Holcomb M, Marshall A, Flinn H, et al. (2024) Probiotic treatment causes sex-specific neuroprotection after traumatic brain injury in mice. Research Square |