Todd Treangen
Affiliations: | 2010-2012 | Computer Science | University of Maryland, College Park, College Park, MD |
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Publications
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| Selvaraj Anand S, Wu CT, Bremer J, et al. (2024) Identification of a novel CG307 sub-clade in third-generation-cephalosporin-resistant causing invasive infections in the USA. Microbial Genomics. 10 |
| Curry KD, Yu FB, Vance SE, et al. (2024) Reference-free Structural Variant Detection in Microbiomes via Long-read Coassembly Graphs. Biorxiv : the Preprint Server For Biology |
| Kille B, Nute MG, Huang V, et al. (2024) Parsnp 2.0: Scalable Core-Genome Alignment for Massive Microbial Datasets. Biorxiv : the Preprint Server For Biology |
| Sapoval N, Tanevski M, Treangen TJ. (2024) KombOver: Efficient k-core and K-truss based characterization of perturbations within the human gut microbiome. Pacific Symposium On Biocomputing. Pacific Symposium On Biocomputing. 29: 506-520 |
| Trovao NS, Pan V, Goel C, et al. (2023) Evolutionary and spatiotemporal analyses reveal multiple introductions and cryptic transmission of SARS-CoV-2 VOC/VOI in Malta. Microbiology Spectrum. e0153923 |
| Kille B, Garrison E, Treangen TJ, et al. (2023) Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. Bioinformatics (Oxford, England). 39 |
| Kille B, Garrison E, Treangen TJ, et al. (2023) Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation. Biorxiv : the Preprint Server For Biology |
| Wang MX, Lou EG, Sapoval N, et al. (2023) Olivar: fully automated and variant aware primer design for multiplex tiled amplicon sequencing of pathogen genomes. Biorxiv : the Preprint Server For Biology |
| Park SH, Cao M, Pan Y, et al. (2022) Comprehensive analysis and accurate quantification of unintended large gene modifications induced by CRISPR-Cas9 gene editing. Science Advances. 8: eabo7676 |
| Walker K, Kalra D, Lowdon R, et al. (2022) The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms. F1000research. 11: 530 |