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Paul Pavlidis

University of British Columbia, Vancouver, Vancouver, BC, Canada 
"Paul Pavlidis"
Mean distance: 13.59 (cluster 11)
Cross-listing: Computational Biology Tree


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Mark Tanouye grad student 1991-1994
Daniel V. Madison post-doc Stanford


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Shamsuddin A. Bhuiyan grad student
Nathaniel Lim grad student 2013- UBC
Eric Chu grad student 2016- UBC
Nivretta Thatra grad student 2016- UBC
Alexander Morin grad student 2017- UBC
Leon French grad student 2005-2012
Meeta Mistry grad student 2006-2012 UBC
Nikolaus Fortelny grad student 2012-2016 University of Salzburg
Daniel Lai grad student 2014-2016 UBC
B. Ogan Mancarci grad student 2014-2018 UBC
Marjan Farahbod grad student 2012-2019 UBC
Lilach Toker post-doc UBC
Shreejoy J. Tripathy post-doc 2014- Carnegie Mellon
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Morin A, Chu EC, Sharma A, et al. (2023) Characterizing the targets of transcription regulators by aggregating ChIP-seq and perturbation expression data sets. Genome Research. 33: 763-778
Novakovsky G, Sasaki S, Fornes O, et al. (2023) In silico discovery of small molecules for efficient stem cell differentiation into definitive endoderm. Stem Cell Reports
Chu EC, Morin A, Chang THC, et al. (2021) Experiment level curation of transcriptional regulatory interactions in neurodevelopment. Plos Computational Biology. 17: e1009484
Lim N, Pavlidis P. (2021) Evaluation of connectivity map shows limited reproducibility in drug repositioning. Scientific Reports. 11: 17624
Sicherman J, Newton DF, Pavlidis P, et al. (2021) Estimating and Correcting for Off-Target Cellular Contamination in Brain Cell Type Specific RNA-Seq Data. Frontiers in Molecular Neuroscience. 14: 637143
Lim N, Tesar S, Belmadani M, et al. (2021) Curation of over 10 000 transcriptomic studies to enable data reuse. Database : the Journal of Biological Databases and Curation
Farahbod M, Pavlidis P. (2020) Untangling the effects of cellular composition on coexpression analysis. Genome Research
Post KL, Belmadani M, Ganguly P, et al. (2020) Multi-model functionalization of disease-associated PTEN missense mutations identifies multiple molecular mechanisms underlying protein dysfunction. Nature Communications. 11: 2073
Nagy C, Maitra M, Tanti A, et al. (2020) Single-nucleus transcriptomics of the prefrontal cortex in major depressive disorder implicates oligodendrocyte precursor cells and excitatory neurons. Nature Neuroscience
Boycott KM, Campeau PM, Howley HE, et al. (2020) The Canadian Rare Diseases Models and Mechanisms (RDMM) Network: Connecting Understudied Genes to Model Organisms. American Journal of Human Genetics. 106: 143-152
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