| Year |
Citation |
Score |
| 2024 |
Lee H, Lee KS, Hsu CH, Lee CW, Li CE, Wang JK, Tseng CC, Chen WJ, Horng CC, Ford CT, Kroh A, Bronstein O, Tanaka H, Oji T, Lin JP, ... Janies D, et al. Reply to: Embracing the taxonomic and topological stability of phylogenomics. Scientific Reports. 14: 4094. PMID 38374375 DOI: 10.1038/s41598-024-54487-x |
0.648 |
|
| 2023 |
Lee H, Lee KS, Hsu CH, Lee CW, Li CE, Wang JK, Tseng CC, Chen WJ, Horng CC, Ford CT, Kroh A, Bronstein O, Tanaka H, Oji T, Lin JP, ... Janies D, et al. Phylogeny, ancestral ranges and reclassification of sand dollars. Scientific Reports. 13: 10199. PMID 37353534 DOI: 10.1038/s41598-023-36848-0 |
0.7 |
|
| 2023 |
Dieng CC, Ford CT, Lerch A, Doniou D, Vegesna K, Janies D, Cui L, Amoah L, Afrane Y, Lo E. Genetic variations of Plasmodium falciparum circumsporozoite protein and the impact on interactions with human immunoproteins and malaria vaccine efficacy. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 110: 105418. PMID 36841398 DOI: 10.1016/j.meegid.2023.105418 |
0.68 |
|
| 2022 |
Mashanov V, Machado DJ, Reid R, Brouwer C, Kofsky J, Janies DA. Twinkle twinkle brittle star: the draft genome of Ophioderma brevispinum (Echinodermata: Ophiuroidea) as a resource for regeneration research. Bmc Genomics. 23: 574. PMID 35953768 DOI: 10.1186/s12864-022-08750-y |
0.754 |
|
| 2022 |
Mashanov V, Whaley L, Davis K, Heinzeller T, Machado DJ, Reid RW, Kofsky J, Janies D. A subterminal growth zone at arm tip likely underlies life-long indeterminate growth in brittle stars. Frontiers in Zoology. 19: 15. PMID 35413857 DOI: 10.1186/s12983-022-00461-0 |
0.728 |
|
| 2021 |
Jacob Machado D, White RA, Kofsky J, Janies DA. Fundamentals of genomic epidemiology, lessons learned from the coronavirus disease 2019 (COVID-19) pandemic, and new directions. Antimicrobial Stewardship & Healthcare Epidemiology : Ashe. 1: e60. PMID 36168505 DOI: 10.1017/ash.2021.222 |
0.764 |
|
| 2021 |
Ford A, Kepple D, Williams J, Kolesar G, Ford CT, Abebe A, Golassa L, Janies DA, Yewhalaw D, Lo E. Gene Polymorphisms Among Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection. Frontiers in Cellular and Infection Microbiology. 11: 789417. PMID 35096643 DOI: 10.3389/fcimb.2021.789417 |
0.678 |
|
| 2020 |
Ford CT, Janies D. Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria. F1000research. 9: 62. PMID 35903243 DOI: 10.12688/f1000research.21539.5 |
0.679 |
|
| 2020 |
Ford CT, Zenarosa GL, Smith KB, Brown DC, Williams J, Janies D. Genetic capitalism and stabilizing selection of antimicrobial resistance genotypes in Escherichia coli. Cladistics : the International Journal of the Willi Hennig Society. 36: 348-357. PMID 34618971 DOI: 10.1111/cla.12421 |
0.69 |
|
| 2020 |
Ford A, Kepple D, Abagero BR, Connors J, Pearson R, Auburn S, Getachew S, Ford C, Gunalan K, Miller LH, Janies DA, Rayner JC, Yan G, Yewhalaw D, Lo E. Whole genome sequencing of Plasmodium vivax isolates reveals frequent sequence and structural polymorphisms in erythrocyte binding genes. Plos Neglected Tropical Diseases. 14: e0008234. PMID 33044985 DOI: 10.1371/journal.pntd.0008234 |
0.703 |
|
| 2020 |
Wen J, Ford CT, Janies D, Shi X. A Parallelized Strategy for Epistasis Analysis Based on Empirical Bayesian Elastic Net Models. Bioinformatics (Oxford, England). PMID 32227194 DOI: 10.1093/Bioinformatics/Btaa216 |
0.72 |
|
| 2020 |
Balkew M, Mumba P, Dengela D, Yohannes G, Getachew D, Yared S, Chibsa S, Murphy M, George K, Lopez K, Janies D, Choi SH, Spear J, Irish SR, Carter TE. Geographical distribution of Anopheles stephensi in eastern Ethiopia. Parasites & Vectors. 13: 35. PMID 31959237 DOI: 10.1186/S13071-020-3904-Y |
0.31 |
|
| 2020 |
Ford CT, Janies D. Ensemble machine learning modeling for the prediction of artemisinin resistance in malaria F1000research. 9: 62. DOI: 10.12688/F1000Research.21539.1 |
0.696 |
|
| 2020 |
Ford CT, Zenarosa GL, Smith KB, Brown DC, Williams J, Janies D. Genetic capitalism and stabilizing selection of antimicrobial resistance genotypes in Escherichia coli Cladistics. 36: 348-357. DOI: 10.1111/Cla.12421 |
0.684 |
|
| 2020 |
Guirales S, Machado DJ, Schneider AdB, Janies D. FLAVi‐Web: A Web Annotator for Viral Genomes of Flaviviridae with a Revised Phylogeny of the Family The Faseb Journal. 34: 1-1. DOI: 10.1096/Fasebj.2020.34.S1.09730 |
0.316 |
|
| 2019 |
Cobb JC, Lawrence JM, Herrera JC, Janies D. A new species of Astropecten (Echinodermata: Asteroidea: Paxillosida: Astropectinidae) and a comparison of the Astropecten species from the Gulf of Mexico and the East Florida Shelf. Zootaxa. 4612: zootaxa.4612.3.1. PMID 31717050 DOI: 10.11646/Zootaxa.4612.3.1 |
0.312 |
|
| 2019 |
Lin JP, Tsai MH, Kroh A, Trautman A, Machado DJ, Chang LY, Reid R, Lin KT, Bronstein O, Lee SJ, Janies D. The first complete mitochondrial genome of the sand dollar Sinaechinocyamus mai (Echinoidea: Clypeasteroida). Genomics. PMID 31629878 DOI: 10.1016/J.Ygeno.2019.10.007 |
0.38 |
|
| 2019 |
Schneider AB, Ochsenreiter R, Hostager R, Hofacker IL, Janies D, Wolfinger MT. Updated Phylogeny of Chikungunya Virus Suggests Lineage-Specific RNA Architecture. Viruses. 11. PMID 31470643 DOI: 10.3390/V11090798 |
0.409 |
|
| 2019 |
de Bernardi Schneider A, Ford CT, Hostager R, Williams J, Cioce M, Çatalyürek ÜV, Wertheim JO, Janies D. StrainHub: A phylogenetic tool to construct pathogen transmission networks. Bioinformatics (Oxford, England). PMID 31418766 DOI: 10.1093/Bioinformatics/Btz646 |
0.703 |
|
| 2019 |
Janies D. Phylogenetic Concepts and Tools Applied to Epidemiologic Investigations of Infectious Diseases. Microbiology Spectrum. 7. PMID 31325287 DOI: 10.1128/Microbiolspec.Ame-0006-2018 |
0.364 |
|
| 2019 |
Janies D, Hernández-Díaz YQ, Solís-Marín FA, Lopez K, Alexandrov B, Galac M, Herrera J, Cobb J, Ebert TA, Bosch I. Discovery of Adults Linked to Cloning Oceanic Starfish Larvae (, Asteroidea: Echinodermata). The Biological Bulletin. 236: 174-185. PMID 31167087 DOI: 10.1086/703233 |
0.316 |
|
| 2019 |
Carter TE, Yared S, Hansel S, Lopez K, Janies D. Sequence-based identification of Anopheles species in eastern Ethiopia. Malaria Journal. 18: 135. PMID 30992003 DOI: 10.1186/S12936-019-2768-0 |
0.353 |
|
| 2019 |
Janies DA, McEdward LR. Highly Derived Coelomic and Water-Vascular Morphogenesis in a Starfish with Pelagic Direct Development. The Biological Bulletin. 185: 56-76. PMID 29300605 DOI: 10.2307/1542130 |
0.64 |
|
| 2018 |
Santibáñez-López CE, Kriebel R, Ballesteros JA, Rush N, Witter Z, Williams J, Janies DA, Sharma PP. Integration of phylogenomics and molecular modeling reveals lineage-specific diversification of toxins in scorpions. Peerj. 6: e5902. PMID 30479892 DOI: 10.7717/Peerj.5902 |
0.498 |
|
| 2018 |
Carter TE, Yared S, Gebresilassie A, Bonnell V, Damodaran L, Lopez K, Ibrahim M, Mohammed S, Janies D. First detection of Anopheles stephensi Liston, 1901 (Diptera: Culicidae) in Ethiopia using molecular and morphological approaches. Acta Tropica. PMID 30189199 DOI: 10.1016/J.Actatropica.2018.09.001 |
0.379 |
|
| 2018 |
Macrander J, Panda J, Janies D, Daly M, Reitzel AM. Venomix: a simple bioinformatic pipeline for identifying and characterizing toxin gene candidates from transcriptomic data. Peerj. 6: e5361. PMID 30083468 DOI: 10.7717/Peerj.5361 |
0.625 |
|
| 2018 |
Jacob Machado D, Janies D, Brouwer C, Grant T. A new strategy to infer circularity applied to four new complete frog mitogenomes. Ecology and Evolution. 8: 4011-4018. PMID 29721275 DOI: 10.1002/Ece3.3918 |
0.646 |
|
| 2017 |
Janies D, Ford C, Damodaran L, Faigen Z. Spread of Middle East Respiratory Coronavirus: Genetic versus Epidemiological Data Online Journal of Public Health Informatics. 9. DOI: 10.5210/Ojphi.V9I1.7581 |
0.721 |
|
| 2015 |
Clouse RM, Linchangco GV, Kerr AM, Reid RW, Janies DA. Phylotranscriptomic analysis uncovers a wealth of tissue inhibitor of metalloproteinases variants in echinoderms. Royal Society Open Science. 2: 150377. PMID 27017967 DOI: 10.1098/Rsos.150377 |
0.651 |
|
| 2015 |
Jones CE, Zandawala M, Semmens DC, Anderson S, Hanson GR, Janies DA, Elphick MR. Identification of a neuropeptide precursor protein that gives rise to a "cocktail" of peptides that bind Cu(II) and generate metal-linked dimers. Biochimica Et Biophysica Acta. PMID 26475641 DOI: 10.1016/J.Bbagen.2015.10.008 |
0.465 |
|
| 2015 |
Christensen AB, Herman JL, Elphick MR, Kober KM, Janies D, Linchangco G, Semmens DC, Bailly X, Vinogradov SN, Hoogewijs D. Phylogeny of Echinoderm Hemoglobins. Plos One. 10: e0129668. PMID 26247465 DOI: 10.1371/Journal.Pone.0129668 |
0.629 |
|
| 2015 |
Hoffmann M, Luo Y, Monday SR, Gonzalez-Escalona N, Ottesen AR, Muruvanda T, Wang C, Kastanis G, Keys C, Janies D, Senturk IF, Catalyurek UV, Wang H, Hammack TS, Wolfgang WJ, et al. Tracing Origins of the Salmonella Bareilly Strain Causing a Food-borne Outbreak in the United States. The Journal of Infectious Diseases. PMID 25995194 DOI: 10.1093/Infdis/Jiv297 |
0.301 |
|
| 2015 |
Grace-Lema DM, Yared S, Quitadamo A, Janies DA, Wheeler WC, Balkew M, Hailu A, Warburg A, Clouse RM. A phylogeny of sand flies (Diptera: Psychodidae: Phlebotominae), using recent Ethiopian collections and a broad selection of publicly available DNA sequence data Systematic Entomology. 40: 733-744. DOI: 10.1111/Syen.12135 |
0.744 |
|
| 2012 |
Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of H7 influenza using genomic, evolutionary and geographic information in a modular web service. Cladistics : the International Journal of the Willi Hennig Society. 28: 483-488. PMID 32313365 DOI: 10.1111/J.1096-0031.2012.00401.X |
0.5 |
|
| 2012 |
Janies DA, Pomeroy LW, Aaronson JM, Handelman S, Hardman J, Kawalec K, Bitterman T, Wheeler WC. Analysis and visualization of h7 influenza using genomic, evolutionary and geographic information in a modular web service Cladistics. 28: 483-488. DOI: 10.1111/j.1096-0031.2012.00401.x |
0.486 |
|
| 2011 |
Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek Ü, Varón A, Wheeler WC. The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases. Cladistics : the International Journal of the Willi Hennig Society. 27: 61-66. PMID 32313364 DOI: 10.1111/J.1096-0031.2010.00314.X |
0.72 |
|
| 2011 |
Janies DA, Treseder T, Alexandrov B, Habib F, Chen JJ, Ferreira R, Çatalyürek U, Varón A, Wheeler WC. The Supramap project: Linking pathogen genomes with geography to fight emergent infectious diseases Cladistics. 27: 61-66. DOI: 10.1111/j.1096-0031.2010.00314.x |
0.504 |
|
| 2010 |
Bulach D, Halpin R, Spiro D, Pomeroy L, Janies D, Boyle DB. Molecular analysis of H7 avian influenza viruses from Australia and New Zealand: genetic diversity and relationships from 1976 to 2007. Journal of Virology. 84: 9957-66. PMID 20668069 DOI: 10.1128/Jvi.00930-10 |
0.372 |
|
| 2010 |
Bokhari SH, Janies DA. Reassortment networks for investigating the evolution of segmented viruses. Ieee/Acm Transactions On Computational Biology and Bioinformatics / Ieee, Acm. 7: 288-98. PMID 20431148 DOI: 10.1109/Tcbb.2008.73 |
0.31 |
|
| 2010 |
Hovmöller R, Alexandrov B, Hardman J, Janies D. Tracking the geographical spread of avian influenza (H5N1) with multiple phylogenetic trees Cladistics. 26: 1-13. DOI: 10.1111/J.1096-0031.2009.00297.X |
0.355 |
|
| 2009 |
Hill AW, Guralnick RP, Wilson MJ, Habib F, Janies D. Evolution of drug resistance in multiple distinct lineages of H5N1 avian influenza. Infection, Genetics and Evolution : Journal of Molecular Epidemiology and Evolutionary Genetics in Infectious Diseases. 9: 169-78. PMID 19022400 DOI: 10.1016/J.Meegid.2008.10.006 |
0.308 |
|
| 2009 |
Yilmaz A, Nishiyama MY, Fuentes BG, Souza GM, Janies D, Gray J, Grotewold E. GRASSIUS: a platform for comparative regulatory genomics across the grasses. Plant Physiology. 149: 171-80. PMID 18987217 DOI: 10.1104/Pp.108.128579 |
0.319 |
|
| 2008 |
Janies D, Habib F, Alexandrov B, Hill A, Pol D. Evolution of genomes, host shifts and the geographic spread of SARS-CoV and related coronaviruses. Cladistics : the International Journal of the Willi Hennig Society. 24: 111-130. PMID 32313363 DOI: 10.1111/J.1096-0031.2008.00199.X |
0.365 |
|
| 2007 |
Janies D, Hill AW, Guralnick R, Habib F, Waltari E, Wheeler WC. Genomic analysis and geographic visualization of the spread of avian influenza (H5N1). Systematic Biology. 56: 321-9. PMID 17464886 DOI: 10.1080/10635150701266848 |
0.528 |
|
| 2007 |
Zhang X, Hasoksuz M, Spiro D, Halpin R, Wang S, Vlasova A, Janies D, Jones LR, Ghedin E, Saif LJ. Quasispecies of bovine enteric and respiratory coronaviruses based on complete genome sequences and genetic changes after tissue culture adaptation. Virology. 363: 1-10. PMID 17434558 DOI: 10.1016/J.Virol.2007.03.018 |
0.337 |
|
| 2007 |
Zhang X, Hasoksuz M, Spiro D, Halpin R, Wang S, Stollar S, Janies D, Hadya N, Tang Y, Ghedin E, Saif L. Complete genomic sequences, a key residue in the spike protein and deletions in nonstructural protein 3b of US strains of the virulent and attenuated coronaviruses, transmissible gastroenteritis virus and porcine respiratory coronavirus. Virology. 358: 424-35. PMID 17023013 DOI: 10.1016/J.Virol.2006.08.051 |
0.321 |
|
| 2005 |
Clouse R, Janies D, Kerr AM. Resurrection of Bohadschia bivittata from B. marmorata (Holothuroidea: Holothuriidae) based on behavioral, morphological, and mitochondrial DNA evidence. Zoology (Jena, Germany). 108: 27-39. PMID 16351952 DOI: 10.1016/J.Zool.2004.07.007 |
0.641 |
|
| 2005 |
Kerr AM, Janies DA, Clouse RM, Samyn Y, Kuszak J, Kim J. Molecular phylogeny of coral-reef sea cucumbers (Holothuriidae: Aspidochirotida) based on 16S mitochondrial ribosomal DNA sequence. Marine Biotechnology (New York, N.Y.). 7: 53-60. PMID 15997365 DOI: 10.1007/S10126-004-0019-Y |
0.659 |
|
| 2002 |
Janies DA, Wheeler WC. Theory and practice of parallel direct optimization. Exs. 115-23. PMID 11924490 |
0.547 |
|
| 2001 |
Janies DA, Wheeler WC. Efficiency of parallel direct optimization. Cladistics : the International Journal of the Willi Hennig Society. 17: S71-82. PMID 12240679 DOI: 10.1006/Clad.2000.0160 |
0.462 |
|
| 2001 |
FROST D, JANIES D, MOUTON PLFN, TITUS T. A Molecular Perspective on the Phylogeny of the Girdled Lizards (Cordylidae, Squamata) American Museum Novitates. 3310: 1. DOI: 10.1206/0003-0082(2001)310<0001:Ampotp>2.0.Co;2 |
0.314 |
|
| 2001 |
Janies D. Phylogenetic relationships of extant echinoderm classes Canadian Journal of Zoology. 79: 1232-1250. DOI: 10.1139/Z00-215 |
0.313 |
|
| 2001 |
Giribet G, Wheeler W, Janies D. Introduction Cladistics. 17: S1-S2. DOI: 10.1006/clad.2000.0153 |
0.363 |
|
| 2000 |
Phillips A, Janies D, Wheeler W. Multiple sequence alignment in phylogenetic analysis. Molecular Phylogenetics and Evolution. 16: 317-30. PMID 10991785 DOI: 10.1006/Mpev.2000.0785 |
0.553 |
|
| 1997 |
Mcedward LR, Janies DA. Relationships among development, ecology, and morphology in the evolution of echinoderm larvae and life cycles Biological Journal of the Linnean Society. 60: 381-400. DOI: 10.1111/J.1095-8312.1997.Tb01502.X |
0.647 |
|
| 1993 |
McEdward LR, Janies DA. Life cycle evolution of asteroids: what is a larva? Biological Bulletin. 184: 255-268. |
0.626 |
|
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