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Regina Barzilay, Ph.D. - Publications

Affiliations: 
Columbia University, New York, NY 
Area:
natural language processing
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38 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Liu G, Catacutan DB, Rathod K, Swanson K, Jin W, Mohammed JC, Chiappino-Pepe A, Syed SA, Fragis M, Rachwalski K, Magolan J, Surette MG, Coombes BK, Jaakkola T, Barzilay R, et al. Deep learning-guided discovery of an antibiotic targeting Acinetobacter baumannii. Nature Chemical Biology. PMID 37231267 DOI: 10.1038/s41589-023-01349-8  0.707
2020 Walters WP, Barzilay R. Applications of Deep Learning in Molecule Generation and Molecular Property Prediction. Accounts of Chemical Research. PMID 33370107 DOI: 10.1021/acs.accounts.0c00699  0.366
2020 Arbour KC, Luu AT, Luo J, Rizvi H, Plodkowski AJ, Sakhi M, Huang KB, Digumarthy SR, Ginsberg MS, Girshman J, Kris MG, Riely GJ, Yala A, Gainor JF, Barzilay R, et al. Deep learning to estimate RECIST in patients with NSCLC treated with PD-1 blockade. Cancer Discovery. PMID 32958579 DOI: 10.1158/2159-8290.Cd-20-0419  0.368
2020 Hirschfeld L, Swanson K, Yang K, Barzilay R, Coley CW. Uncertainty Quantification using Neural Networks for Molecular Property Prediction. Journal of Chemical Information and Modeling. PMID 32702986 DOI: 10.1021/Acs.Jcim.0C00502  0.338
2020 Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackermann Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, ... ... Barzilay R, et al. A Deep Learning Approach to Antibiotic Discovery. Cell. 181: 475-483. PMID 32302574 DOI: 10.1016/j.cell.2020.04.001  0.695
2020 Struble TJ, Alvarez JC, Brown S, Chytil M, Cisar J, DesJarlais R, Engkvist O, Frank SA, Greve DR, Griffin DJ, Hou X, Johannes JW, Kreatsoulas C, Lahue B, Mathea M, ... ... Barzilay R, et al. Current and Future Roles of Artificial Intelligence in Medicinal Chemistry Synthesis. Journal of Medicinal Chemistry. PMID 32243158 DOI: 10.1021/Acs.Jmedchem.9B02120  0.385
2020 Dontchos BN, Yala A, Barzilay R, Xiang J, Lehman CD. External Validation of a Deep Learning Model for Predicting Mammographic Breast Density in Routine Clinical Practice. Academic Radiology. PMID 32089465 DOI: 10.1016/J.Acra.2019.12.012  0.32
2020 Stokes JM, Yang K, Swanson K, Jin W, Cubillos-Ruiz A, Donghia NM, MacNair CR, French S, Carfrae LA, Bloom-Ackerman Z, Tran VM, Chiappino-Pepe A, Badran AH, Andrews IW, Chory EJ, ... ... Barzilay R, et al. A Deep Learning Approach to Antibiotic Discovery. Cell. 180: 688-702.e13. PMID 32084340 DOI: 10.1016/J.Cell.2020.01.021  0.702
2020 Wang X, Qian Y, Gao H, Coley CW, Mo Y, Barzilay R, Jensen KF. Towards Efficient Discovery of Green Synthesis Pathways with Monte Carlo Tree Search and Reinforcement Learning Chemical Science. DOI: 10.1039/D0Sc04184J  0.346
2019 Yang K, Swanson K, Jin W, Coley C, Eiden P, Gao H, Guzman-Perez A, Hopper T, Kelley B, Mathea M, Palmer A, Settels V, Jaakkola T, Jensen K, Barzilay R. Correction to Analyzing Learned Molecular Representations for Property Prediction. Journal of Chemical Information and Modeling. PMID 31814400 DOI: 10.1021/Acs.Jcim.9B01076  0.383
2019 Yala A, Schuster T, Miles R, Barzilay R, Lehman C. A Deep Learning Model to Triage Screening Mammograms: A Simulation Study. Radiology. 182908. PMID 31385754 DOI: 10.1148/Radiol.2019182908  0.328
2019 Yang K, Swanson K, Jin W, Coley CW, Eiden P, Gao H, Guzman-Perez A, Hopper T, Kelley B, Mathea M, Palmer A, Settels V, Jaakkola TS, Jensen KF, Barzilay R. Analyzing Learned Molecular Representations for Property Prediction. Journal of Chemical Information and Modeling. PMID 31361484 DOI: 10.1021/Acs.Jcim.9B00237  0.378
2019 Yala A, Lehman C, Schuster T, Portnoi T, Barzilay R. A Deep Learning Mammography-based Model for Improved Breast Cancer Risk Prediction. Radiology. 182716. PMID 31063083 DOI: 10.1148/Radiol.2019182716  0.321
2019 Portnoi T, Yala A, Schuster T, Barzilay R, Dontchos B, Lamb L, Lehman C. Deep Learning Model to Assess Cancer Risk on the Basis of a Breast MR Image Alone. Ajr. American Journal of Roentgenology. 1-7. PMID 30933651 DOI: 10.2214/Ajr.18.20813  0.328
2019 Coley CW, Jin W, Rogers L, Jamison TF, Jaakkola TS, Green WH, Barzilay R, Jensen KF. A graph-convolutional neural network model for the prediction of chemical reactivity. Chemical Science. 10: 370-377. PMID 30746086 DOI: 10.1039/C8Sc04228D  0.389
2019 Arbour KC, Tuan LA, Rizvi H, Yala A, Hellmann MD, Barzilay R. ml-RECIST: Machine learning to estimate RECIST in patients with NSCLC treated with PD-(L)1 blockade. Journal of Clinical Oncology. 37: 9052-9052. DOI: 10.1200/Jco.2019.37.15_Suppl.9052  0.309
2018 Lehman CD, Yala A, Schuster T, Dontchos B, Bahl M, Swanson K, Barzilay R. Mammographic Breast Density Assessment Using Deep Learning: Clinical Implementation. Radiology. 180694. PMID 30325282 DOI: 10.1148/Radiol.2018180694  0.308
2018 Tang R, Ouyang L, Li C, He Y, Griffin M, Taghian A, Smith B, Yala A, Barzilay R, Hughes K. Machine learning to parse breast pathology reports in Chinese. Breast Cancer Research and Treatment. PMID 29380208 DOI: 10.1007/S10549-018-4668-3  0.397
2018 Narasimhan K, Barzilay R, Jaakkola T. Grounding Language for Transfer in Deep Reinforcement Learning Journal of Artificial Intelligence Research. 63: 849-874. DOI: 10.1613/Jair.1.11263  0.402
2018 Jänner M, Narasimhan K, Barzilay R. Representation Learning for Grounded Spatial Reasoning Transactions of the Association For Computational Linguistics. 6: 49-61. DOI: 10.1162/Tacl_A_00004  0.314
2017 Bahl M, Barzilay R, Yedidia AB, Locascio NJ, Yu L, Lehman CD. High-Risk Breast Lesions: A Machine Learning Model to Predict Pathologic Upgrade and Reduce Unnecessary Surgical Excision. Radiology. 170549. PMID 29039725 DOI: 10.1148/Radiol.2017170549  0.346
2017 Coley CW, Barzilay R, Green WH, Jaakkola TS, Jensen KF. Convolutional embedding of attributed molecular graphs for physical property prediction. Journal of Chemical Information and Modeling. PMID 28696688 DOI: 10.1021/Acs.Jcim.6B00601  0.373
2017 Coley CW, Barzilay R, Jaakkola TS, Green WH, Jensen KF. Prediction of Organic Reaction Outcomes Using Machine Learning. Acs Central Science. 3: 434-443. PMID 28573205 DOI: 10.1021/Acscentsci.7B00064  0.314
2017 Zhang Y, Barzilay R, Jaakkola T. Aspect-augmented Adversarial Networks for Domain Adaptation Transactions of the Association For Computational Linguistics. 5: 515-528. DOI: 10.1162/Tacl_A_00077  0.379
2017 Luo J, Narasimhan K, Barzilay R. Unsupervised Learning of Morphological Forests Transactions of the Association For Computational Linguistics. 5: 353-364. DOI: 10.1162/Tacl_A_00066  0.303
2016 Yala A, Barzilay R, Salama L, Griffin M, Sollender G, Bardia A, Lehman C, Buckley JM, Coopey SB, Polubriaginof F, Garber JE, Smith BL, Gadd MA, Specht MC, Gudewicz TM, et al. Using machine learning to parse breast pathology reports. Breast Cancer Research and Treatment. PMID 27826755 DOI: 10.1007/S10549-016-4035-1  0.398
2013 Sauper C, Barzilay R. Automatic aggregation by joint modeling of aspects and values Journal of Artificial Intelligence Research. 46: 89-127. DOI: 10.1613/Jair.3647  0.313
2012 Branavan SRK, Silver D, Barzilay R. Learning to win by reading manuals in a monte-carlo framework Journal of Artificial Intelligence Research. 43: 661-704. DOI: 10.1613/Jair.3484  0.343
2009 Naseem T, Snyder B, Eisenstein J, Barzilay R. Multilingual part-of-speech tagging: two unsupervised approaches Journal of Artificial Intelligence Research. 36: 341-385. DOI: 10.1613/Jair.2843  0.36
2009 Chen H, Branavan SRK, Barzilay R, Karger DR. Content modeling using latent permutations Journal of Artificial Intelligence Research. 36: 129-163. DOI: 10.1613/Jair.2830  0.388
2009 Branavan SRK, Chen H, Eisenstein J, Barzilay R. Learning document-level semantic properties from free-text annotations Journal of Artificial Intelligence Research. 34: 569-603. DOI: 10.1613/Jair.2633  0.4
2008 Eisenstein J, Barzilay R, Davis R. Gesture salience as a hidden variable for coreference resolution and keyframe extraction Journal of Artificial Intelligence Research. 31: 353-398. DOI: 10.1613/Jair.2450  0.416
2008 Barzilay R, Lapata M. Modeling Local Coherence: An Entity-Based Approach Computational Linguistics. 34: 1-34. DOI: 10.1162/Coli.2008.34.1.1  0.385
2006 Lacson RC, Barzilay R, Long WJ. Automatic analysis of medical dialogue in the home hemodialysis domain: structure induction and summarization. Journal of Biomedical Informatics. 39: 541-55. PMID 16488194 DOI: 10.1016/J.Jbi.2005.12.009  0.329
2005 Barzilay R, McKeown KR. Sentence fusion for multidocument news summarization Computational Linguistics. 31: 297-327. DOI: 10.1162/089120105774321091  0.579
2002 Barzilay R, Elhadad N, McKeown KR. Inferring strategies for sentence ordering in multidocument news summarization Journal of Artificial Intelligence Research. 17: 35-55. DOI: 10.1613/Jair.991  0.662
2002 Barzilay R, Elhadad N. Inferring Strategies for Sentence Ordering in Multidocument News Summarization Journal of Artificial Intelligence Research. 17: 35-55. DOI: 10.1613/jair.991  0.564
1999 McKeown KR, Klavans JL, Hatzivassiloglou V, Barzilay R, Eskin E. Towards multidocument summarization by reformulation: progress and prospects Proceedings of the National Conference On Artificial Intelligence. 453-460.  0.501
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