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Daniel E. Runcie, Ph.D. - Publications

Affiliations: 
Biology Duke University, Durham, NC 
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24 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2023 Yang N, Wang Y, Liu X, Jin M, Vallebueno-Estrada M, Calfee E, Chen L, Dilkes BP, Gui S, Fan X, Harper TK, Kennett DJ, Li W, Lu Y, Ding J, ... ... Runcie D, et al. Two teosintes made modern maize. Science (New York, N.Y.). 382: eadg8940. PMID 38033071 DOI: 10.1126/science.adg8940  0.39
2022 Qu J, Runcie D, Cheng H. Mega-scale Bayesian Regression methods for genome-wide prediction and association studies with thousands of traits. Genetics. PMID 36529897 DOI: 10.1093/genetics/iyac183  0.349
2022 Hu H, Crow T, Nojoomi S, Schulz AJ, Estévez-Palmas JM, Hufford MB, Flint-Garcia S, Sawers R, Rellan-Alvarez R, Ross-Ibarra J, Runcie DE. Allele-specific expression reveals multiple paths to highland adaptation in maize. Molecular Biology and Evolution. PMID 36327321 DOI: 10.1093/molbev/msac239  0.436
2022 Hine E, Runcie DE, Allen SL, Wang Y, Chenoweth SF, Blows MW, McGuigan K. Maintenance of quantitative genetic variance in complex, multi-trait phenotypes: The contribution of rare, large effect variants in two Drosophila species. Genetics. PMID 35961029 DOI: 10.1093/genetics/iyac122  0.467
2022 Barnes AC, Rodríguez-Zapata F, Juárez-Núñez KA, Gates DJ, Janzen GM, Kur A, Wang L, Jensen SE, Estévez-Palmas JM, Crow TM, Kavi HS, Pil HD, Stokes RL, Knizner KT, Aguilar-Rangel MR, ... ... Runcie D, et al. An adaptive teosinte introgression modulates phosphatidylcholine levels and is associated with maize flowering time. Proceedings of the National Academy of Sciences of the United States of America. 119: e2100036119. PMID 35771940 DOI: 10.1073/pnas.2100036119  0.324
2022 Hudson AI, Odell SG, Dubreuil P, Tixier MH, Praud S, Runcie DE, Ross-Ibarra J. Analysis of genotype by environment interactions in a maize mapping population. G3 (Bethesda, Md.). PMID 35134181 DOI: 10.1093/g3journal/jkac013  0.385
2020 Crow T, Ta J, Nojoomi S, Aguilar-Rangel MR, Torres Rodríguez JV, Gates D, Rellán-Álvarez R, Sawers R, Runcie D. Gene regulatory effects of a large chromosomal inversion in highland maize. Plos Genetics. 16: e1009213. PMID 33270639 DOI: 10.1371/journal.pgen.1009213  0.43
2020 Ta J, Palmer C, Brock M, Rubin M, Weinig C, Maloof J, Runcie D. Multiple Loci Control Variation in Plasticity to Foliar Shade Throughout Development in . G3 (Bethesda, Md.). PMID 32988993 DOI: 10.1534/g3.120.401259  0.354
2020 Martínez-Berdeja A, Stitzer MC, Taylor MA, Okada M, Ezcurra E, Runcie DE, Schmitt J. Functional variants of control seed chilling responses and variation in seasonal life-history strategies in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31964817 DOI: 10.1073/Pnas.1912451117  0.425
2019 Crawford L, Flaxman SR, Runcie DE, West M. VARIABLE PRIORITIZATION IN NONLINEAR BLACK BOX METHODS: A GENETIC ASSOCIATION CASE STUDY. The Annals of Applied Statistics. 13: 958-989. PMID 32542104 DOI: 10.1214/18-Aoas1222  0.401
2019 Gray SB, Rodriguez-Medina J, Rusoff S, Toal TW, Kajala K, Runcie D, Brady SM. Translational regulation contributes to the elevated CO response in two Solanum species. The Plant Journal : For Cell and Molecular Biology. PMID 31797460 DOI: 10.1111/Tpj.14632  0.489
2019 Runcie D, Cheng H. Pitfalls and Remedies for Cross Validation with Multi-trait Genomic Prediction Methods. G3 (Bethesda, Md.). PMID 31511297 DOI: 10.1534/G3.119.400598  0.324
2019 Taylor MA, Wilczek AM, Roe JL, Welch SM, Runcie DE, Cooper MD, Schmitt J. Large-effect flowering time mutations reveal conditionally adaptive paths through fitness landscapes in . Proceedings of the National Academy of Sciences of the United States of America. PMID 31420516 DOI: 10.1073/Pnas.1902731116  0.365
2019 Runcie DE, Crawford L. Fast and flexible linear mixed models for genome-wide genetics. Plos Genetics. 15: e1007978. PMID 30735486 DOI: 10.1371/Journal.Pgen.1007978  0.469
2018 Gaudinier A, Rodriguez-Medina J, Zhang L, Olson A, Liseron-Monfils C, Bågman AM, Foret J, Abbitt S, Tang M, Li B, Runcie DE, Kliebenstein DJ, Shen B, Frank MJ, Ware D, et al. Transcriptional regulation of nitrogen-associated metabolism and growth. Nature. PMID 30356219 DOI: 10.1038/S41586-018-0656-3  0.394
2018 Hine E, Runcie DE, McGuigan K, Blows MW. Uneven Distribution of Mutational Variance Across the Transcriptome of Revealed by High-Dimensional Analysis of Gene Expression. Genetics. PMID 29884746 DOI: 10.1534/Genetics.118.300757  0.467
2017 Runcie DE, Dorey N, Garfield DA, Stumpp M, Dupont S, Wray GA. Genomic characterization of the evolutionary potential of the sea urchin Strongylocentrotus droebachiensis facing ocean acidification. Genome Biology and Evolution. PMID 28082601 DOI: 10.1093/Gbe/Evw272  0.644
2016 Hamilton JA, El Kayal W, Hart AT, Runcie DE, Arango-Velez A, Cooke JE. The joint influence of photoperiod and temperature during growth cessation and development of dormancy in white spruce (Picea glauca). Tree Physiology. PMID 27449791 DOI: 10.1093/Treephys/Tpw061  0.339
2015 Burghardt LT, Runcie DE, Wilczek AM, Cooper MD, Roe JL, Welch SM, Schmitt J. Fluctuating, warm temperatures decrease the effect of a key floral repressor on flowering time in Arabidopsis thaliana. The New Phytologist. PMID 26681345 DOI: 10.1111/Nph.13799  0.353
2015 Donohue K, Burghardt LT, Runcie D, Bradford KJ, Schmitt J. Applying developmental threshold models to evolutionary ecology. Trends in Ecology & Evolution. 30: 66-77. PMID 25534247 DOI: 10.1016/J.Tree.2014.11.008  0.463
2013 Garfield DA, Runcie DE, Babbitt CC, Haygood R, Nielsen WJ, Wray GA. The impact of gene expression variation on the robustness and evolvability of a developmental gene regulatory network. Plos Biology. 11: e1001696. PMID 24204211 DOI: 10.1371/Journal.Pbio.1001696  0.663
2013 Runcie DE, Mukherjee S. Dissecting high-dimensional phenotypes with bayesian sparse factor analysis of genetic covariance matrices. Genetics. 194: 753-67. PMID 23636737 DOI: 10.1534/Genetics.113.151217  0.529
2013 Runcie DE, Wiedmann RT, Archie EA, Altmann J, Wray GA, Alberts SC, Tung J. Social environment influences the relationship between genotype and gene expression in wild baboons. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120345. PMID 23569293 DOI: 10.1098/Rstb.2012.0345  0.609
2012 Runcie DE, Garfield DA, Babbitt CC, Wygoda JA, Mukherjee S, Wray GA. Genetics of gene expression responses to temperature stress in a sea urchin gene network. Molecular Ecology. 21: 4547-62. PMID 22856327 DOI: 10.1111/J.1365-294X.2012.05717.X  0.669
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