Jenny Tung, Ph.D. - Publications

Affiliations: 
Evolutionary Anthropology Duke University, Durham, NC 

52 high-probability publications. We are testing a new system for linking publications to authors. You can help! If you notice any inaccuracies, please sign in and mark papers as correct or incorrect matches. If you identify any major omissions or other inaccuracies in the publication list, please let us know.

Year Citation  Score
2019 Grieneisen LE, Charpentier MJE, Alberts SC, Blekhman R, Bradburd G, Tung J, Archie EA. Genes, geology and germs: gut microbiota across a primate hybrid zone are explained by site soil properties, not host species. Proceedings. Biological Sciences. 286: 20190431. PMID 31014219 DOI: 10.1098/rspb.2019.0431  1
2019 Debray R, Snyder-Mackler N, Kohn JN, Wilson ME, Barreiro LB, Tung J. Social affiliation predicts mitochondrial DNA copy number in female rhesus macaques. Biology Letters. 15: 20180643. PMID 30958211 DOI: 10.1098/rsbl.2018.0643  0.56
2019 Devoto AE, Santini JM, Olm MR, Anantharaman K, Munk P, Tung J, Archie EA, Turnbaugh PJ, Seed KD, Blekhman R, Aarestrup FM, Thomas BC, Banfield JF. Megaphages infect Prevotella and variants are widespread in gut microbiomes. Nature Microbiology. PMID 30692672 DOI: 10.1038/s41564-018-0338-9  1
2018 Lea AJ, Vockley CM, Johnston RA, Del Carpio CA, Barreiro LB, Reddy TE, Tung J. Genome-wide quantification of the effects of DNA methylation on human gene regulation. Elife. 7. PMID 30575519 DOI: 10.7554/eLife.37513  0.72
2018 Snyder-Mackler N, Sanz J, Kohn JN, Voyles T, Pique-Regi R, Wilson ME, Barreiro LB, Tung J. Social status alters chromatin accessibility and the gene regulatory response to glucocorticoid stimulation in rhesus macaques. Proceedings of the National Academy of Sciences of the United States of America. PMID 30538209 DOI: 10.1073/pnas.1811758115  0.56
2018 Lea AJ, Akinyi MY, Nyakundi R, Mareri P, Nyundo F, Kariuki T, Alberts SC, Archie EA, Tung J. Dominance rank-associated gene expression is widespread, sex-specific, and a precursor to high social status in wild male baboons. Proceedings of the National Academy of Sciences of the United States of America. PMID 30538194 DOI: 10.1073/pnas.1811967115  1
2018 Vilgalys T, Rogers J, Jolly C, Mukherjee S, Tung J. Evolution of DNA methylation in Papio baboons. Molecular Biology and Evolution. PMID 30521003 DOI: 10.1093/molbev/msy227  0.44
2017 Lea AJ, Tung J, Archie EA, Alberts SC. Developmental plasticity research in evolution and human health: Response to commentaries. Evolution, Medicine, and Public Health. 2017: 201-205. PMID 29645009 DOI: 10.1093/emph/eoy007  1
2017 Lea AJ, Tung J, Archie EA, Alberts SC. Developmental plasticity: Bridging research in evolution and human health. Evolution, Medicine, and Public Health. 2017: 162-175. PMID 29424834 DOI: 10.1093/emph/eox019  1
2017 Grieneisen LE, Livermore J, Alberts S, Tung J, Archie EA. Group Living and Male Dispersal Predict the Core Gut Microbiome in Wild Baboons. Integrative and Comparative Biology. 57: 770-785. PMID 29048537 DOI: 10.1093/icb/icx046  1
2017 Lea AJ, Vilgalys TP, Durst PAP, Tung J. Maximizing ecological and evolutionary insight in bisulfite sequencing data sets. Nature Ecology & Evolution. 1: 1074-1083. PMID 29046582 DOI: 10.1038/s41559-017-0229-0  0.72
2017 Tung J, Barreiro LB. The contribution of admixture to primate evolution. Current Opinion in Genetics & Development. 47: 61-68. PMID 28923540 DOI: 10.1016/j.gde.2017.08.010  0.56
2017 Sun S, Hood M, Scott L, Peng Q, Mukherjee S, Tung J, Zhou X. Differential expression analysis for RNAseq using Poisson mixed models. Nucleic Acids Research. PMID 28369632 DOI: 10.1093/nar/gkx204  0.44
2017 Miller EA, Livermore JA, Alberts SC, Tung J, Archie EA. Ovarian cycling and reproductive state shape the vaginal microbiota in wild baboons. Microbiome. 5: 8. PMID 28103920 DOI: 10.1186/s40168-017-0228-z  1
2016 Snyder-Mackler N, Sanz J, Kohn JN, Brinkworth JF, Morrow S, Shaver AO, Grenier JC, Pique-Regi R, Johnson ZP, Wilson ME, Barreiro LB, Tung J. Social status alters immune regulation and response to infection in macaques. Science (New York, N.Y.). 354: 1041-1045. PMID 27885030 DOI: 10.1126/science.aah3580  0.56
2016 Nédélec Y, Sanz J, Baharian G, Szpiech ZA, Pacis A, Dumaine A, Grenier JC, Freiman A, Sams AJ, Hebert S, Pagé Sabourin A, Luca F, Blekhman R, Hernandez RD, Pique-Regi R, ... Tung J, et al. Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens. Cell. 167: 657-669.e21. PMID 27768889 DOI: 10.1016/j.cell.2016.09.025  0.56
2016 Kohn JN, Snyder-Mackler N, Barreiro LB, Johnson ZP, Tung J, Wilson ME. Dominance rank causally affects personality and glucocorticoid regulation in female rhesus macaques. Psychoneuroendocrinology. 74: 179-188. PMID 27639059 DOI: 10.1016/j.psyneuen.2016.09.005  1
2016 Blekhman R, Tang K, Archie EA, Barreiro LB, Johnson ZP, Wilson ME, Kohn J, Yuan ML, Gesquiere L, Grieneisen LE, Tung J. Common methods for fecal sample storage in field studies yield consistent signatures of individual identity in microbiome sequencing data. Scientific Reports. 6: 31519. PMID 27528013 DOI: 10.1038/srep31519  1
2016 Charruau P, Johnston RA, Stahler DR, Lea A, Snyder-Mackler N, Smith DW, vonHoldt BM, Cole SW, Tung J, Wayne RK. Pervasive Effects of Aging on Gene Expression in Wild Wolves. Molecular Biology and Evolution. PMID 27189566 DOI: 10.1093/molbev/msw072  1
2016 Wall JD, Schlebusch SA, Alberts SC, Cox LA, Snyder-Mackler N, Nevonen K, Carbone L, Tung J. Genome-wide ancestry and divergence patterns from low-coverage sequencing data reveal a complex history of admixture in wild baboons. Molecular Ecology. PMID 27145036 DOI: 10.1111/mec.13684  1
2016 Snyder-Mackler N, Majoros WH, Yuan ML, Shaver AO, Gordon JB, Kopp GH, Schlebusch SA, Wall JD, Alberts SC, Mukherjee S, Zhou X, Tung J. Efficient Genome-Wide Sequencing and Low Coverage Pedigree Analysis from Non-invasively Collected Samples. Genetics. PMID 27098910 DOI: 10.1534/genetics.116.187492  1
2016 Tung J, Archie EA, Altmann J, Alberts SC. Cumulative early life adversity predicts longevity in wild baboons. Nature Communications. 7: 11181. PMID 27091302 DOI: 10.1038/ncomms11181  1
2016 Snyder-Mackler N, Kohn JN, Barreiro LB, Johnson ZP, Wilson ME, Tung J. Social status drives social relationships in groups of unrelated female rhesus macaques. Animal Behaviour. 111: 307-317. PMID 26769983 DOI: 10.1016/j.anbehav.2015.10.033  0.56
2015 Lea AJ, Tung J, Zhou X. A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data. Plos Genetics. 11: e1005650. PMID 26599596 DOI: 10.1371/journal.pgen.1005650  0.72
2015 Lea AJ, Altmann J, Alberts SC, Tung J. Resource base influences genome-wide DNA methylation levels in wild baboons (Papio cynocephalus). Molecular Ecology. PMID 26508127 DOI: 10.1111/mec.13436  1
2015 Pacis A, Tailleux L, Morin AM, Lambourne J, Maclsaac JL, Yotova V, Dumaine A, Danckaert A, Luca F, Grenier JC, Hansen KD, Gicquel B, Yu M, Pai A, He C, ... Tung J, et al. Bacterial infection remodels the DNA methylation landscape of human dendritic cells. Genome Research. PMID 26392366 DOI: 10.1101/gr.192005.115  0.56
2015 Franz M, McLean E, Tung J, Altmann J, Alberts SC. Self-organizing dominance hierarchies in a wild primate population. Proceedings. Biological Sciences / the Royal Society. 282. PMID 26336168 DOI: 10.1098/rspb.2015.1512  1
2015 Lea AJ, Altmann J, Alberts SC, Tung J. Developmental constraints in a wild primate. The American Naturalist. 185: 809-21. PMID 25996865 DOI: 10.1086/681016  1
2015 Galbany J, Tung J, Altmann J, Alberts SC. Canine length in wild male baboons: maturation, aging and social dominance rank. Plos One. 10: e0126415. PMID 25950700 DOI: 10.1371/journal.pone.0126415  1
2015 Tung J, Barreiro LB, Burns MB, Grenier JC, Lynch J, Grieneisen LE, Altmann J, Alberts SC, Blekhman R, Archie EA. Social networks predict gut microbiome composition in wild baboons. Elife. 4. PMID 25774601 DOI: 10.7554/eLife.05224  1
2015 Tung J, Zhou X, Alberts SC, Stephens M, Gilad Y. The genetic architecture of gene expression levels in wild baboons. Elife. 4. PMID 25714927 DOI: 10.7554/eLife.04729  1
2015 Archie EA, Tung J. Social behavior and the microbiome Current Opinion in Behavioral Sciences. 6: 28-34. DOI: 10.1016/j.cobeha.2015.07.008  1
2014 Archie EA, Tung J, Clark M, Altmann J, Alberts SC. Social affiliation matters: both same-sex and opposite-sex relationships predict survival in wild female baboons. Proceedings. Biological Sciences / the Royal Society. 281. PMID 25209936 DOI: 10.1098/rspb.2014.1261  1
2014 Gallego Romero I, Pai AA, Tung J, Gilad Y. RNA-seq: impact of RNA degradation on transcript quantification. Bmc Biology. 12: 42. PMID 24885439 DOI: 10.1186/1741-7007-12-42  1
2014 Snyder-Mackler N, Somel M, Tung J. Shared signatures of social stress and aging in peripheral blood mononuclear cell gene expression profiles Aging Cell. 13: 954-957. DOI: 10.1111/acel.12239  1
2013 Akinyi MY, Tung J, Jeneby M, Patel NB, Altmann J, Alberts SC. Role of Grooming in Reducing Tick Load in Wild Baboons (Papio cynocephalus). Animal Behaviour. 85: 559-568. PMID 24659824 DOI: 10.1016/j.anbehav.2012.12.012  1
2013 Tung J, Gilad Y. Social environmental effects on gene regulation. Cellular and Molecular Life Sciences : Cmls. 70: 4323-39. PMID 23685902 DOI: 10.1007/s00018-013-1357-6  1
2013 Runcie DE, Wiedmann RT, Archie EA, Altmann J, Wray GA, Alberts SC, Tung J. Social environment influences the relationship between genotype and gene expression in wild baboons. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences. 368: 20120345. PMID 23569293 DOI: 10.1098/rstb.2012.0345  1
2012 Harper KN, Fyumagwa RD, Hoare R, Wambura PN, Coppenhaver DH, Sapolsky RM, Alberts SC, Tung J, Rogers J, Kilewo M, Batamuzi EK, Leendertz FH, Armelagos GJ, Knauf S. Treponema pallidum infection in the wild baboons of East Africa: distribution and genetic characterization of the strains responsible. Plos One. 7: e50882. PMID 23284649 DOI: 10.1371/journal.pone.0050882  1
2012 Barreiro LB, Tung J. Getting under—and through—the skin: ecological genomics of chytridiomycosis infection in frogs. Molecular Ecology. 21: 3095-7. PMID 22916344 DOI: 10.1111/j.1365-294X.2012.05624.x  1
2012 Tung J, Charpentier MJ, Mukherjee S, Altmann J, Alberts SC. Genetic effects on mating success and partner choice in a social mammal. The American Naturalist. 180: 113-29. PMID 22673655 DOI: 10.1086/665993  1
2012 Tung J, Barreiro LB, Johnson ZP, Hansen KD, Michopoulos V, Toufexis D, Michelini K, Wilson ME, Gilad Y. Social environment is associated with gene regulatory variation in the rhesus macaque immune system. Proceedings of the National Academy of Sciences of the United States of America. 109: 6490-5. PMID 22493251 DOI: 10.1073/pnas.1202734109  1
2012 Babbitt CC, Tung J, Wray GA, Alberts SC. Changes in gene expression associated with reproductive maturation in wild female baboons. Genome Biology and Evolution. 4: 102-9. PMID 22155733 DOI: 10.1093/gbe/evr134  1
2012 Charpentier MJE, Fontaine MC, Cherel E, Renoult JP, Jenkins T, Benoit L, Barthès N, Alberts SC, Tung J. Genetic structure in a dynamic baboon hybrid zone corroborates behavioural observations in a hybrid population Molecular Ecology. 21: 715-731. PMID 21988698 DOI: 10.1111/j.1365-294X.2011.05302.x  1
2011 Tung J, Akinyi MY, Mutura S, Altmann J, Wray GA, Alberts SC. Allele-specific gene expression in a wild nonhuman primate population. Molecular Ecology. 20: 725-39. PMID 21226779 DOI: 10.1111/j.1365-294X.2010.04970.x  1
2010 Tung J, Alberts SC, Wray GA. Evolutionary genetics in wild primates: combining genetic approaches with field studies of natural populations. Trends in Genetics : Tig. 26: 353-62. PMID 20580115 DOI: 10.1016/j.tig.2010.05.005  1
2009 Tung J, Primus A, Bouley AJ, Severson TF, Alberts SC, Wray GA. Evolution of a malaria resistance gene in wild primates. Nature. 460: 388-91. PMID 19553936 DOI: 10.1038/nature08149  0.68
2009 Tung J, Fédrigo O, Haygood R, Mukherjee S, Wray GA. Genomic features that predict allelic imbalance in humans suggest patterns of constraint on gene expression variation. Molecular Biology and Evolution. 26: 2047-59. PMID 19506001 DOI: 10.1093/molbev/msp113  1
2009 Leonhardt SD, Tung J, Camden JB, Leal M, Drea CM. Seeing red: Behavioral evidence of trichromatic color vision in strepsirrhine primates Behavioral Ecology. 20: 1-12. DOI: 10.1093/beheco/arn106  1
2008 Tung J, Charpentier MJ, Garfield DA, Altmann J, Alberts SC. Genetic evidence reveals temporal change in hybridization patterns in a wild baboon population. Molecular Ecology. 17: 1998-2011. PMID 18363664 DOI: 10.1111/j.1365-294X.2008.03723.x  1
2008 Charpentier MJ, Tung J, Altmann J, Alberts SC. Age at maturity in wild baboons: genetic, environmental and demographic influences. Molecular Ecology. 17: 2026-40. PMID 18346122 DOI: 10.1111/j.1365-294X.2008.03724.x  1
2007 Tung J, Rudolph J, Altmann J, Alberts SC. Parallel effects of genetic variation in ACE activity in baboons and humans. American Journal of Physical Anthropology. 134: 1-8. PMID 17503445 DOI: 10.1002/ajpa.20614  1
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